Contig 007528:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN018K10Sequence585007528 (4)ref|XP_008359596.1|1e-18PREDICTED: CDPK-related kinase 1-like [Malus domestica]
JMSF005G12Sequence254004779 (2)192007528 (4)
JMSF052M07Sequence566007528 (4)ref|XP_010508754.1|4e-04PREDICTED: CDPK-related kinase 1-like [Camelina sativa]531007528 (4)ref|XP_010508754.1|3e-04PREDICTED: CDPK-related kinase 1-like [Camelina sativa]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF052M07+ TTTAAGTAAA
                      ____________________________________________________________
consensus TTTAAGTAAA
 
. : . : . : . : . : . :
rJMSF052M07- CGAGTTCGATTCTTGCCAACATTCTCTCCTGTTAG
JMSF052M07+ ACATAATTCTCATATTAAAAAATCACGAGTTCGATTCTTGCCAACATTCTCTCCTGTTAG
                      ____________________________________________________________
consensus ACATAATTCTCATATTAAAAAATCACGAGTTCGATTCTTGCCAACATTCTCTCCTGTTAG
 
. : . : . : . : . : . :
rJMSF052M07- ACAGGATCTTCCTATCTGATTACACAGAAACGAAATTTACCCGATACAATGGTATATATA
rJMSF005G12- TATATN
JMSF052M07+ ACAGGATCTTCCTATCTGATTACACAGAAACGAAATTTACCCGATACAATGGTATATATA
JMFN018K10+ CTGATTACACAGAAACGAANTTTACCCGATACAATGGTATATATA
                      ____________________________________________________________
consensus ACAGGATCTTCCTATCTGATTACACAGAAACGAAATTTACCCGATACAATGGTATATATA
 
. : . : . : . : . : . :
rJMSF052M07- CTCAGAATATATATAGAACACAACAACCAACAAAATAAGTAGTAAGGAATTGAGTGCACA
rJMSF005G12- CTCGGAATATATATAGAACACANCAACCGANAAAATAAGTAGTAAGGANTTGAGTGCACN
JMSF052M07+ CTCAGAATATATATAGAACACAACAACCAACAAAATAAGTAGTAAGGAATTGAGTGCACA
JMFN018K10+ CTCAGAATATATATAGAACACAACAACCAACAAAATAAGTAGTAAGGAATTGAGTGCACA
                      ____________________________________________________________
consensus CTCAGAATATATATAGAACACAACAACCAACAAAATAAGTAGTAAGGAATTGAGTGCACA
 
. : . : . : . : . : . :
rJMSF052M07- AGGAATACACCTGCATGCCACCAAACCTCATTTCAGCATGGTGCTGTTTACTAACCCTAC
rJMSF005G12- AGGAATACACCTGCATGCCACCAAACCTCATTTCANCATGGTGCTGTTTACTAACCCTAC
JMSF052M07+ AGGAATACACCTGCATGCCACCAAACCTCATTTCAGCATGGTGCTGTTTACTAACCCTAC
JMFN018K10+ AGGAATACACCTGCATGCCACCAAACCTCATTTCAGCATGGTGCTGTTTACTAACCCTAC
                      ____________________________________________________________
consensus AGGAATACACCTGCATGCCACCAAACCTCATTTCAGCATGGTGCTGTTTACTAACCCTAC
 
. : . : . : . : . : . :
rJMSF052M07- ATACATTCTTGTCATATAATCTATCTCTTCTGTACATTCCTCTATGCTTCATGGCATCAC
rJMSF005G12- ATACATTCTTGTCATATAATCTATCTCTTCTGNACNTTCCTCTATGCTNCATGGCNTCAC
JMSF052M07+ ATACATTCTTGTCATATAATCTATCTCTTCTGTACATTCCTCTATGCTTCATGGCATCAC
JMFN018K10+ ATACATTCTTGTCATATAATCTATCTCTTCTGTACATTCCTCTATGCTTCATGGCATCAC
                      ____________________________________________________________
consensus ATACATTCTTGTCATATAATCTATCTCTTCTGTACATTCCTCTATGCTTCATGGCATCAC
 
. : . : . : . : . : . :
rJMSF052M07- ATAATCAAAGAAAACAAAAAATAAAATAAAATTTGCATACTGACAAGTGAAGATGTTGGA
JMSF052M07+ ATAATCAAAGAAAACAAAAAATAAAATAAAATTTGCATACTGACAAGTGAAGATGTTGGA
JMFN018K10+ ATAATCAAAGAAAACAAAAAATAAAATAAAATTTGCATACTGACAAGTGAAGATGTTGAA
                      ____________________________________________________________
consensus ATAATCAAAGAAAACAAAAAATAAAATAAAATTTGCATACTGACAAGTGAAGATGTTGGA
 
. : . : . : . : . : . :
rJMSF052M07- GCTTCTTGATCTTCAAGCTGTGCTTCTCAGGAATGCTTTTTATCTCTGAGAAAGAATGGT
JMSF052M07+ GCTTCTTGATCTTCAAGCTGTGCTTCTCAGGAATGCTTTTTATCTCTGAGAAAGAATGGT
JMFN018K10+ GCTTCTTGATCTTCAAGCTGTGCTTCTCAGGAATGCTTTTTATCTCTGAGAAAGAATGGT
                      ____________________________________________________________
consensus GCTTCTTGATCTTCAAGCTGTGCTTCTCAGGAATGCTTTTTATCTCTGAGAAAGAATGGT
 
. : . : . : . : . : . :
rJMSF052M07- CGGTCCAAACACAGAATCAAAGAGAAAGACTCGAGGTAGCCCCCCGGCGAAGTTATAGTC
JMSF052M07+ CGGTCCAAACACAGAATCAAAGAGAAAGACTCGAGGTAGCCCCCCGGCGAAGTTATAGTC
JMFN018K10+ CGGTCCAAACACAGAATCAAAGAGAAAGACTCGAGGTAGCCCCCCGGCGAAGTTATAGTC
                      ____________________________________________________________
consensus CGGTCCAAACACAGAATCAAAGAGAAAGACTCGAGGTAGCCCCCCGGCGAAGTTATAGTC
 
. : . : . : . : . : . :
rJMSF052M07- TTAAGCTTTTTGAAGGGCACGGGCAGAAAGACCATGCAGAAGACGAACGAACCCCAAGAA
JMSF052M07+ TTAAGCTTTTTGAAGGGCACGGGCAGAAAGACCATGCAGAAGACGAACGAACCCCAAGAA
JMFN018K10+ TTAAGCTTTTTGAAGGGCACGGGCAGAAAGACCATGCAGAAGACGAACGAACCCCAAGAA
                      ____________________________________________________________
consensus TTAAGCTTTTTGAAGGGCACGGGCAGAAAGACCATGCAGAAGACGAACGAACCCCAAGAA
 
. : . : . : . : . : . :
rJMSF052M07- ACTGAGCTTTCCATCC
JMSF052M07+ ACTGAGCTTTCCATCC
JMFN018K10+ ACTGAGCTTTCCATCCGAGTGTCTGATCCAGTCCTGCAGAACTACGTGAACTGGAACCGA
                      ____________________________________________________________
consensus ACTGAGCTTTCCATCCGAGTGTCTGATCCAGTCCTGCAGAACTACGTGAACTGGAACCGA
 
. : . : . : . : . : . :
JMFN018K10+ AGGGCTCAGGCCGAGCTCCTGTATATATATATATATATATATATATATATATATATAGAA
                      ____________________________________________________________
consensus AGGGCTCAGGCCGAGCTCCTGTATATATATATATATATATATATATATATATATATAGAA