Contig 007519:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013P02Sequence625007519 (2)ref|XP_004252003.1|5e-62PREDICTED: thioredoxin-like 1-1, chloroplastic [Solanum lycopersicum]
JMSF042N09Sequence746015833ref|XP_004252003.1|3e-89PREDICTED: thioredoxin-like 1-1, chloroplastic [Solanum lycopersicum]765007519 (2)ref|XP_010999478.1|3e-55PREDICTED: thioredoxin-like 1-1, chloroplastic isoform X1 [Populus euphratica]

Alignment

This contig is upended


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rJMSF042N09- TATGTTTATTGAGGGCTAATCTCCGATTAAAAAAGG
                      ____________________________________________________________
consensus TATGTTTATTGAGGGCTAATCTCCGATTAAAAAAGG
 
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rJMSF042N09- GAGAGAGCCCGGAGAATAGGATAGGAATGCATATTATACAACTTGTGATGGGAGATCACA
                      ____________________________________________________________
consensus GAGAGAGCCCGGAGAATAGGATAGGAATGCATATTATACAACTTGTGATGGGAGATCACA
 
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rJMSF042N09- GCCTGCTAATTGCTAAACTTCATCCTACAGGGGAGCACTATTAACAAGAAAATTCAATCC
                      ____________________________________________________________
consensus GCCTGCTAATTGCTAAACTTCATCCTACAGGGGAGCACTATTAACAAGAAAATTCAATCC
 
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rJMSF042N09- CTAAAGTCCTAAAATACACCCACTCTCCTCCTATGAAGCCGAATGGGATGGATATGCAGC
                      ____________________________________________________________
consensus CTAAAGTCCTAAAATACACCCACTCTCCTCCTATGAAGCCGAATGGGATGGATATGCAGC
 
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rJMSF042N09- AGTTGAAGCATATTCTGATCAGATCATCTACCAGAGGGAACGAAAGTTCGGTCATCAGTA
                      ____________________________________________________________
consensus AGTTGAAGCATATTCTGATCAGATCATCTACCAGAGGGAACGAAAGTTCGGTCATCAGTA
 
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rJMSF042N09- CCAGAGAGTTGCTTGATCTCCGGTGAGGCGGCTGATGGAATTGGACGCGGAAGTGGGAGT
                      ____________________________________________________________
consensus CCAGAGAGTTGCTTGATCTCCGGTGAGGCGGCTGATGGAATTGGACGCGGAAGTGGGAGT
 
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rJMSF042N09- CGGAATTCTGAGTGTGGATGATGAGATGGCGGTTTCCCTGCTCGTAAGGGCACAGAAACG
                      ____________________________________________________________
consensus CGGAATTCTGAGTGTGGATGATGAGATGGCGGTTTCCCTGCTCGTAAGGGCACAGAAACG
 
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rJMSF042N09- GGTTCTTCTGGTTTTGGTGCGTAGTTGAAGGAGAGATCCCTGTTTTCTGCTAGTGCAAGT
                      ____________________________________________________________
consensus GGTTCTTCTGGTTTTGGTGCGTAGTTGAAGGAGAGATCCCTGTTTTCTGCTAGTGCAAGT
 
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rJMSF042N09- AGCTCTTTCTCCTCCAAGCCCTTTGGAGGCCCCAGACCGCATCTATCTGCCCCGTATTTG
                      ____________________________________________________________
consensus AGCTCTTTCTCCTCCAAGCCCTTTGGAGGCCCCAGACCGCATCTATCTGCCCCGTATTTG
 
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rJMSF042N09- ACGAGCGCATCTTTGAATTTCTTAATCGTTGCGTTAGTGCAACTGAAGCTACAAACACGA
                      ____________________________________________________________
consensus ACGAGCGCATCTTTGAATTTCTTAATCGTTGCGTTAGTGCAACTGAAGCTACAAACACGA
 
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rJMSF042N09- CCTTCAGCTCCTCTATAGAAACGGAAAAATGGAAGAACATGTACATTAAGGCTATAACAC
JMFN013P02+ GAACATGTACATTAAGGCTATAACAC
                      ____________________________________________________________
consensus CCTTCAGCTCCTCTATAGAAACGGAAAAATGGAAGAACATGTACATTAAGGCTATAACAC
 
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rJMSF042N09- ATGGACTTGTGCTCCTCATAGTTAACCTGCAGAAACTGTATGTCTGGGTTCATCTCCGCC
JMFN013P02+ ATGGACTTGTGCTCCTCATAGTTAACCTGCAGAAACTGTATGTCTGGGTTCATCTCCGCC
                      ____________________________________________________________
consensus ATGGACTTGTGCTCCTCATAGTTAACCTGCAGAAACTGTATGTCTGGGTTCATCTCCGCC
 
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rJMSF042N09- AACTGGCACATCTTAGGATGGAGGGGCTTTGCAGCCACCACAACCAGGGGAAAAGAAATC
JMFN013P02+ AACTGGCACATCTTAGGATGGA-GGGCTTTGCAGCCACCACAACCAGGGGAAAAGAAATC
                      ____________________________________________________________
consensus AACTGGCACATCTTAGGATGGAGGGGCTTTGCAGCCACCACAACCAGGGGAAAAGAAATC
 
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rJMSF042N09- CACCACCAC
JMFN013P02+ CACCACCACCAAATTATCAGTGGCATTTGAAAGAGATTCTACGAGGTCTTGAGCACTCAC
                      ____________________________________________________________
consensus CACCACCACCAAATTATCAGTGGCATTTGAAAGAGATTCTACGAGGTCTTGAGCACTCAC
 
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JMFN013P02+ AACCTCTTTCATGTTGGGTTGAAGCCCTTTCTCCCACCATCTTTGAGCTTTCGCAATTCC
                      ____________________________________________________________
consensus AACCTCTTTCATGTTGGGTTGAAGCCCTTTCTCCCACCATCTTTGAGCTTTCGCAATTCC
 
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JMFN013P02+ AATGCTCATCTGTGTTCGGCCATTTCCTGGGAAAAGCAGGGTTCCGGTGGCTACTCTGCG
                      ____________________________________________________________
consensus AATGCTCATCTGTGTTCGGCCATTTCCTGGGAAAAGCAGGGTTCCGGTGGCTACTCTGCG
 
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JMFN013P02+ ACCATAAAAATCGGTGCTCGGTGAATTCGGAGCCCCGCACGAGAGTTTCAGAGACTGAGC
                      ____________________________________________________________
consensus ACCATAAAAATCGGTGCTCGGTGAATTCGGAGCCCCGCACGAGAGTTTCAGAGACTGAGC
 
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JMFN013P02+ ATCCGAACACGCGCGGGAGCAAACAAGAGATCCATTTGGGAAAGTACAAACTCGGTGTTG
                      ____________________________________________________________
consensus ATCCGAACACGCGCGGGAGCAAACAAGAGATCCATTTGGGAAAGTACAAACTCGGTGTTG
 
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JMFN013P02+ ACTATAACGACGAGCCGCCGATTTATGATCGGTACTCGACGGCGAAAACACGACGCCGGC
                      ____________________________________________________________
consensus ACTATAACGACGAGCCGCCGATTTATGATCGGTACTCGACGGCGAAAACACGACGCCGGC
 
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JMFN013P02+ CGCCTTGCTAACTACTCCCGCCATGGATGAATCGTTCGGTGATTTCCAAAATCCCGATTT
                      ____________________________________________________________
consensus CGCCTTGCTAACTACTCCCGCCATGGATGAATCGTTCGGTGATTTCCAAAATCCCGATTT
 
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JMFN013P02+ CGAGAAAGTTGAGAATTGAAAAAAAAATTGTTTTCCGATAAAGAAAGAAAGCTATAACCC
                      ____________________________________________________________
consensus CGAGAAAGTTGAGAATTGAAAAAAAAATTGTTTTCCGATAAAGAAAGAAAGCTATAACCC