Contig 007514:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014H22Sequence532007514 (3)ref|XP_006339121.1|8e-60PREDICTED: RAB6-interacting golgin-like [Solanum tuberosum]762007514 (3)ref|XP_011094404.1|5e-59PREDICTED: structural maintenance of chromosomes protein 1A [Sesamum indicum]
JMFN011N24Sequence608007514 (3)ref|XP_009624494.1|224PREDICTED: uncharacterized protein LOC104115534 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-                                                              TAGCTGAG
                      ____________________________________________________________
consensus                                                                 TAGCTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          AGTTGAGACCTGCTTTTTTGTTACAAACCTGTTTACAGGGGTATGTCCCTCGGGATCTAA
                      ____________________________________________________________
consensus             AGTTGAGACCTGCTTTTTTGTTACAAACCTGTTTACAGGGGTATGTCCCTCGGGATCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          AGTCAGACATCAAAAGCTAAGAGCAAGACAACCAAAAGCGGAATAAGAAAGAAGAAGAAG
                      ____________________________________________________________
consensus             AGTCAGACATCAAAAGCTAAGAGCAAGACAACCAAAAGCGGAATAAGAAAGAAGAAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          AAGAAGAAGAAAACTTACAACCCGACACAAAAAACACCCATATATAATTAAGACTGTCTT
                      ____________________________________________________________
consensus             AAGAAGAAGAAAACTTACAACCCGACACAAAAAACACCCATATATAATTAAGACTGTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          TTTACTTAAATACATCACACGCATGGCCTAATTAGTCACGAGACTTTCGATTAGCGGGGG
                      ____________________________________________________________
consensus             TTTACTTAAATACATCACACGCATGGCCTAATTAGTCACGAGACTTTCGATTAGCGGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          GAGAAGATTTCAGCGTAGCGTTTCTATGCTCTTGCTCAGCTCCTCCAACTTCTTCAGAAG
                      ____________________________________________________________
consensus             GAGAAGATTTCAGCGTAGCGTTTCTATGCTCTTGCTCAGCTCCTCCAACTTCTTCAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          ATTTCAGCGTAGCGTTTCTATGCTCTTGCTCAGCTCCTCCAACTTCTTCATCCTCAACTT
                      ____________________________________________________________
consensus             ATTTCAGCGTAGCGTTTCTATGCTCTTGCTCAGCTCCTCCAACTTCTTCATCCTCAACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          CTCGCTTTCACTCACCAGCTCCGTCAACCTTGTGATTAGCTGTACTTTTTCCTTGTGCTT
JMFF014H22+                             CTCCGTCAACCTTGTGATTAGCTGTACTTTTTCCTTGTGCTT
JMFN011N24+                             CTCCGTCAACCTTGTGATTAGCTGTACTTTTTCCTTGTGCTT
                      ____________________________________________________________
consensus             CTCGCTTTCACTCACCAGCTCCGTCAACCTTGTGATTAGCTGTACTTTTTCCTTGTGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          CTCATTGAAGGCCTCGAGAGCTTCTTTGTACTCTCTCTCCTTCTTCTGGCAAGTCTGTCC
JMFF014H22+           CTCATTGAAGGCCTCGAGAGCTTCTTTGTACTCTCTCTCCTTCTTCTGGCAAGTCTGTCC
JMFN011N24+           CTCATTGAAGGCCTCGAGAGCTTCTTTGTACTCTCTCTCCTTCTTCTGGCAAGTCTGTCC
                      ____________________________________________________________
consensus             CTCATTGAAGGCCTCGAGAGCTTCTTTGTACTCTCTCTCCTTCTTCTGGCAAGTCTGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          CAATGGTTTTAACTCCTTGTTAACCGTATCAATCTTCTTGCGAACGAGAGAAACTTCCTT
JMFF014H22+           CAATGGTTTTAACTCCTTGTTAACCGTATCAATCTTCTTGCGAACGAGAGAAACTTCCTT
JMFN011N24+           CAATGGTTTTAACTCCTTGTTAACCGTATCAATCTTCTTGCGAACGAGAGAAACTTCCTT
                      ____________________________________________________________
consensus             CAATGGTTTTAACTCCTTGTTAACCGTATCAATCTTCTTGCGAACGAGAGAAACTTCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          CTTCATTGGATCTGCTAGCGCTTCTAGTTCCTCGAGAATGGTAGCCAAACGCCTGGTTTC
JMFF014H22+           CTTCATTGGATCTGCTAGCGCTTCTAGTTCCTCGAGAATGGTAGCCAAACGCCTGGTTTC
JMFN011N24+           CTTCATTGGATCTGCTAGCGCTTCTAGTTCCTCGCGAATGGTAGCCAAACGCCTGGTTTC
                      ____________________________________________________________
consensus             CTTCATTGGATCTGCTAGCGCTTCTAGTTCCTCGAGAATGGTAGCCAAACGCCTGGTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          TTCTTCAATACGGCCAAGCTGAGCCTGGACTTTCTCCCTGACCTCGAGCTTCTTCTTCTC
JMFF014H22+           TTCTTCAATACGGCCAAGCTGAGCCTGGACTTTCTCCCTGACCTCGAGCTTCTTCTTCTC
JMFN011N24+           TTCTTCAATACGGCCAAGCTGAGCCTGGACTTTCTCCCTGACCTCGAGCTTCTTCTTCTC
                      ____________________________________________________________
consensus             TTCTTCAATACGGCCAAGCTGAGCCTGGACTTTCTCCCTGACCTCGAGCTTCTTCTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          AATCTCCTCTTCTTTAGCCTTGAAGGTGGAGAGAGCAGACCTAGACATCTCCTCGTCTTC
JMFF014H22+           AATCTCCTCTTCTTTAGCCTTGAAGGTGGAGAGAGCAGACCTAGACATCTCCTCGTCTTC
JMFN011N24+           AATCTCCTCTTCTTTAGCCTTGAAGGTGGAGAGAGCAGACCTAGACATCTCCTCGTCTTC
                      ____________________________________________________________
consensus             AATCTCCTCTTCTTTAGCCTTGAAGGTGGAGAGAGCAGACCTAGACATCTCCTCGTCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014H22-          CTTAGTCATGGTGCCATTGAAGCTCAAGCTCCCA                          
JMFF014H22+           CTTAGTCATGGTGCCATTGAAGCTCAAGCTCCCAGAAATTTGGCCAGACTGCATCAGTGT
JMFN011N24+           CTTAGTCATGGTGCCATTGAAGCTCAAGCTCCCAGAAATTTGGCCAGACTGCATCAGTGT
                      ____________________________________________________________
consensus             CTTAGTCATGGTGCCATTGAAGCTCAAGCTCCCAGAAATTTGGCCAGACTGCATCAGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014H22+           CTGAAGCTGAGTCTGTGACTCTCCTCCTTGTCTCTGGTTCTGCATCGTCTCTCCTCCTCC
JMFN011N24+           CTGAAGCTGAGTCTGTGACTCTCCTCCTTGTCTCTGGTTCTGCATCGTCTCTCCTCCTCC
                      ____________________________________________________________
consensus             CTGAAGCTGAGTCTGTGACTCTCCTCCTTGTCTCTGGTTCTGCATCGTCTCTCCTCCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014H22+           TCCTGCTTCTTCTTCTTGTTCTACCACTTCCGCCGTAGCTGCTAC               
JMFN011N24+           TCCTGCTTCTTCTTCTTGTTCTACCACTTCCGCCGTAGCTGCTACTTCTTCTTCTTCTTC
                      ____________________________________________________________
consensus             TCCTGCTTCTTCTTCTTGTTCTACCACTTCCGCCGTAGCTGCTACTTCTTCTTCTTCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN011N24+           TTCTTGTTTGCACTGAAAACACCGAAGAAAAAGCGAAACCCTTCTTTTCCCCTCAATTTT
                      ____________________________________________________________
consensus             TTCTTGTTTGCACTGAAAACACCGAAGAAAAAGCGAAACCCTTCTTTTCCCCTCAATTTT