clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF031C19 | Sequence | 507 | 007411 (2) | ref|XP_009625733.1| | 2e-21 | PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Nicotiana tom | 619 | 011097 (2) | ref|XP_004228528.1| | 1e-68 | PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Solanum lycop |
JMSF050L06 | Sequence | 658 | 007411 (2) | ref|XP_009625733.1| | 1e-56 | PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Nicotiana tom | 759 | 020542 | ref|XP_004228528.1| | 6e-100 | PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Solanum lycop |
This contig is upended
. : . : . : . : . : . :
JMSF050L06+ TTCAACA
____________________________________________________________
consensus TTCAACA
. : . : . : . : . : . :
JMSF050L06+ GCCTCAGCATTCTTGTCAAAACCAGCAGCAAGGCCTAAAGGATTTGAGAACCTTCTGCCC
____________________________________________________________
consensus GCCTCAGCATTCTTGTCAAAACCAGCAGCAAGGCCTAAAGGATTTGAGAACCTTCTGCCC
. : . : . : . : . : . :
JMSF050L06+ CAAACTTCAAGGCCTAATATAGTAGGATCTGGTCTCTTCTCCTTTGGAACCCACCCACGA
____________________________________________________________
consensus CAAACTTCAAGGCCTAATATAGTAGGATCTGGTCTCTTCTCCTTTGGAACCCACCCACGA
. : . : . : . : . : . :
JMSF050L06+ GAAGCAGCTGAAACAGCCAATCTGTGGGCTACCTCTAGATCCAGAAGTGCAAAAAACGGA
JMFF031C19+ GATCCAGAAGTGCAAAAAACGGA
____________________________________________________________
consensus GAAGCAGCTGAAACAGCCAATCTGTGGGCTACCTCTAGATCCAGAAGTGCAAAAAACGGA
. : . : . : . : . : . :
JMSF050L06+ TTTACAAGTTTTGTTGCTGAGAATAGCCAGCCACAGAAAGTTTCTTCATCCACTGTACTA
JMFF031C19+ TTTACAAGTTTTGTTGCTGAGAATAGCCAGCCACAGAAAGTTTCTTCATCCACTGTACTA
____________________________________________________________
consensus TTTACAAGTTTTGTTGCTGAGAATAGCCAGCCACAGAAAGTTTCTTCATCCACTGTACTA
. : . : . : . : . : . :
JMSF050L06+ GCATAAGCTCCTCCTGCTATTAGTAAACCAATGGTAGCTCCAGTAAGTAACCTTCCCTTT
JMFF031C19+ GCATAAGCTCCTCCTGCTATTAGTAAACCAATGGTAGCTCCAGTAAGTAACCTTCCCTTT
____________________________________________________________
consensus GCATAAGCTCCTCCTGCTATTAGTAAACCAATGGTAGCTCCAGTAAGTAACCTTCCCTTT
. : . : . : . : . : . :
JMSF050L06+ TTTGATGAATGAGAAGCCCGAGGAGGAAGATTGGGAGCAGAAGAAGTGCAGTAATCATTC
JMFF031C19+ TTTGATGAATGAGAAGCCCGAGGAGGAAGATTGGGAGCAGAAGAAGTGCAGTAATCATTC
____________________________________________________________
consensus TTTGATGAATGAGAAGCCCGAGGAGGAAGATTGGGAGCAGAAGAAGTGCAGTAATCATTC
. : . : . : . : . : . :
JMSF050L06+ CTGGGTAAAAAGCTGTTTGGTTTGAGCTTCCTGCAAATGCTTTCTCTTATTAAACCCGCT
JMFF031C19+ CTGGGTAAAAAGCTGTTTGGTTTGAGCTTCCTGCAAATGCTTTCTCTTATTAAACCCGCT
____________________________________________________________
consensus CTGGGTAAAAAGCTGTTTGGTTTGAGCTTCCTGCAAATGCTTTCTCTTATTAAACCCGCT
. : . : . : . : . : . :
JMSF050L06+ GCAATCCTTGCTCCTCTCATTATTCTTTCTTCTTCTTCCTCTTCTTCTTCCCAGTATCAA
JMFF031C19+ GCAATCCTTGCTCCTCTCATTATTCTTTCTTCTTCTTCCTCTTCTTCTTCCCAGTATCAA
____________________________________________________________
consensus GCAATCCTTGCTCCTCTCATTATTCTTTCTTCTTCTTCCTCTTCTTCTTCCCAGTATCAA
. : . : . : . : . : . :
JMSF050L06+ TGCTTCAAGAAACTCTTGCAGATAAAATAAAGTAAATTCTCCTCAAAGAGTCAAAGCTAT
JMFF031C19+ TGCTTCAAGAAACTCTTGCAGATAAAATAAAGTAAATTCTCCTCAAAGAGTCAAAGCTAT
____________________________________________________________
consensus TGCTTCAAGAAACTCTTGCAGATAAAATAAAGTAAATTCTCCTCAAAGAGTCAAAGCTAT
. : . : . : . : . : . :
JMSF050L06+ GAAAAATTATCACGGACAGTTGCTTTCATAAGAGAAGGATAAATCAATTGGTACTAGAAA
JMFF031C19+ GAAAAATTATCACGGACAGTTGCTTTCATAAGAGAAGGATAAATCAATTGGTACTAGAAA
____________________________________________________________
consensus GAAAAATTATCACGGACAGTTGCTTTCATAAGAGAAGGATAAATCAATTGGTACTAGAAA
. : . : . : . : . : . :
JMSF050L06+ AACGTGGATTGAGAGCGTGAGAGAGAAAGAGGTTTGCCTAAGCTTAAGAC
JMFF031C19+ AACGTGGATTGAGAGCGTGAGAGAGAAAGAGGTTTGCCTAAGCTTAAGACAGTTCAACTG
____________________________________________________________
consensus AACGTGGATTGAGAGCGTGAGAGAGAAAGAGGTTTGCCTAAGCTTAAGACAGTTCAACTG