Contig 007405:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004D21Sequence527007405 (9)ref|XP_011083821.1|2e-26PREDICTED: polyadenylate-binding protein RBP47-like [Sesamum indicum]720009866 (8)ref|XP_006354957.1|1e-81PREDICTED: polyadenylate-binding protein RBP47C-like [Solanum tuberosum]
JMFF023M09Sequence158007405 (9)
JMFF027E18Sequence492007405 (9)ref|XP_009764865.1|7e-16PREDICTED: polyadenylate-binding protein RBP47C-like [Nicotiana sylvestris]686009866 (8)ref|XP_006354957.1|2e-76PREDICTED: polyadenylate-binding protein RBP47C-like [Solanum tuberosum]
JMFF029P10Sequence442007405 (9)644009866 (8)ref|XP_006354957.1|3e-68PREDICTED: polyadenylate-binding protein RBP47C-like [Solanum tuberosum]
JMFF051I11Sequence616007405 (9)emb|CDP01376.1|3e-45unnamed protein product [Coffea canephora]616009866 (8)ref|XP_006354957.1|2e-53PREDICTED: polyadenylate-binding protein RBP47C-like [Solanum tuberosum]
JMFN025J06Sequence376007405 (9)
JMSF007H18Sequence431007405 (9)402009866 (8)ref|XP_006354957.1|5e-27PREDICTED: polyadenylate-binding protein RBP47C-like [Solanum tuberosum]
JMSF020N06Sequence653007405 (9)ref|XP_011083821.1|3e-52PREDICTED: polyadenylate-binding protein RBP47-like [Sesamum indicum]353009866 (8)ref|XP_009764865.1|2e-12PREDICTED: polyadenylate-binding protein RBP47C-like [Nicotiana sylvestris]
JMSF038J22Sequence735007405 (9)ref|XP_011083821.1|7e-63PREDICTED: polyadenylate-binding protein RBP47-like [Sesamum indicum]

Alignment

This contig is upended


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JMSF038J22+                              TCAAGTAGTAAGGTATCAGTAACATCAGCAGCTAGGTCTCN
                      ____________________________________________________________
consensus                                TCAAGTAGTAAGGTATCAGTAACATCAGCAGCTAGGTCTCN
 
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JMSF038J22+           TACGAATATAGAAAGATCAGAACCATTATTTAAACGCTTCTCCCCCATGCTAAATGTTGC
JMSF020N06+                                                            CTAAATGTTGC
                      ____________________________________________________________
consensus             TACGAATATAGAAAGATCAGAACCATTATTTAAACGCTTCTCCCCCATGCTAAATGTTGC
 
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JMSF038J22+           CCAATTCAGACGAAAGAGTTGATCTGTATTAGGCATTAAAATGCAGGTGTATGACTGAAG
JMFF051I11+                                  CTGTATTAGGCATTAAAATGCAGGTGTATGACTGAAG
JMSF020N06+           CCAATTCAGACGAAAGAGTTGATCTGTATTAGGCATTAAAATGCAGGTGTATGACTGAAG
                      ____________________________________________________________
consensus             CCAATTCAGACGAAAGAGTTGATCTGTATTAGGCATTAAAATGCAGGTGTATGACTGAAG
 
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JMSF038J22+           AGCTTTCTCTGCAGCAGCATGAGAATAGAATTCTACAAAACCATATCCCTCTGAGAAACC
JMFF004D21+                                                              TGAGAAACC
JMFF051I11+           AGCTTTCTCTGCAGCAGCATGAGAATAGAATTCTACAAAACCATATCCCTCTGAGAAACC
JMSF020N06+           AGCNTTCTCTGCAGCAGCATGAGAATAGAATTCTACAAAACCATATCCCTCTGAGAAACC
                      ____________________________________________________________
consensus             AGCTTTCTCTGCAGCAGCATGAGAATAGAATTCTACAAAACCATATCCCTCTGAGAAACC
 
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JMSF038J22+           AGTCTGTTTGTTTCTGATCACCTTAATGGATGCAACCTCCCCAGTGGAGGCGAAACAGCT
JMFF004D21+           AGTCTGTTTGTTTCTGATCACCTTAATGGATGCAACCTCCCCAGTGGAGGCGAAACAGCT
JMFF027E18+                                                 CCCCAGTGGAGGCGAAACAGCT
JMFF051I11+           AGTCTGTTTGTTTCTGATCACCTTAATGGATGCAACCTCCCCAGTGGAGGCGAAACAGCT
JMSF020N06+           AGTCTGTTTGTTTCTGATCACCTTAATGGATGCAACCTCCCCAGTGGAGGCGAAACAGCT
                      ____________________________________________________________
consensus             AGTCTGTTTGTTTCTGATCACCTTAATGGATGCAACCTCCCCAGTGGAGGCGAAACAGCT
 
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JMSF038J22+           ACGCAAATAATCCTCATCCATCCAATTGTGAAGGTCACCGATCCAGATTGTTCTGTTCTC
JMFF004D21+           ACGCAAATAATCCTCATCCATCCAATTGTGAAGGTCACCGATCCAGATTGTTCTGTTCTC
JMFF027E18+           ACGCAAATAATCCTCATCCATCCAATTGTGAAGGTCACCGATCCAGATTGTTCTGTTCTC
JMFF051I11+           ACGCAAATAATCCTCATCCATCCAATTGTGAAGGTCACCGATCCAGATTGTTCTGTTCTC
JMFN025J06+                                                CCGATCCAGATTGTTCTGTTCTC
JMSF007H18+                                       TGAAGGTCACCGATCCAGATTGTTCTGTTCTC
JMSF020N06+           ACGCAAATAATCCTCATCCATCCAATTGTGAAGGTCACCGATCCAGATTGTTCTGTTCTC
JMFF029P10+                                                CCGATCCAGATTGTTCTGTTCTC
                      ____________________________________________________________
consensus             ACGCAAATAATCCTCATCCATCCAATTGTGAAGGTCACCGATCCAGATTGTTCTGTTCTC
 
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JMSF038J22+           GCCATTAGATCCTCCATGCTGCTGTTGCTGCTGCGGCTGCGCATGCGGCGGAGGGTGGTG
JMFF004D21+           GCCATTAGATCCTCCATGCTGCTGTTGCTGCTGCGGCTGCGCATGCGGCGGAGGGTGGTG
JMFF027E18+           GCCATTAGATCCTCCATGCTGCTGTTGCTGCTGCGGCTGCGCATGCGGCGGAGGGTGGTG
JMFF051I11+           GCCATTAGATCCTCCATGCTGCTGTTGCTGCTGCGGCTGCGCATGCGGCGGAGGGTGGTG
JMFN025J06+           GCCATTAGATCCTCCATGCTGCTGTTGCTGCTGCGGCTGCGCATGCGGCGGAGGGTGGTG
JMSF007H18+           GCCATTAGATCCTCCATGCTGCTGTTGCTGCTGCGGCTGCGCATGCGGCGGAGGGTGGTG
JMSF020N06+           GCCATTAGATCCTCCATGCTGCTGTTGCTGCTGCGGCTGCGCATGCGGCGGAGGGTGGTG
JMFF029P10+           GCCATTAGATCCTCCATGCTGCTGTTGCTGCTGCGGCTGCGCATGCGGCGGAGGGTGGTG
                      ____________________________________________________________
consensus             GCCATTAGATCCTCCATGCTGCTGTTGCTGCTGCGGCTGCGCATGCGGCGGAGGGTGGTG
 
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JMSF038J22+           GAGGAAGTGGGGGTGGTAAGGCATGTAGTGAGGCGGGTAATGCGTCGCCGGCATCATCTG
JMFF004D21+           GAGGAAGTGGGGGTGGTAAGGCATGTAGTGAGGCGGGTAATGCGTCGCCGGCATCATCTG
JMFF027E18+           GAGGAAGTGGGGGTGGTAAGGCATGTAGTGAGGCGGGTAATGCGTCGCCGGCATCATCTG
JMFF051I11+           GAGGAAGTGGGGGTGGTAAGGCATGTAGTGAGGCGGGTAATGCGTCGCCGGCATCATCTG
JMFN025J06+           GAGGAAGTGGGGGTGGTAAGGCATGTAGTGAGGCGGGTAATGCGTCGCCGGCATCATGTG
JMSF007H18+           GAGGAAGTGGGGGTGGTAAGGCATGTAGTGAGGCGGGTAATGCGTCGCCGGCATCATCTG
JMSF020N06+           GAGGAAGTGGGGGTGGTAAGGCATGTAGTGAGGCGGGTAATGCGTCGCCGGCATCATCTG
JMFF029P10+           GAGGAAGTGGGGGTGGTAAGGCATGTAGTGAGGCGGGTAATGCGTCGCCGGCATCATCTG
                      ____________________________________________________________
consensus             GAGGAAGTGGGGGTGGTAAGGCATGTAGTGAGGCGGGTAATGCGTCGCCGGCATCATCTG
 
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JMSF038J22+           ATGCTGCATTACCGTTGCCGCCGCCGGGTATTGCATAGGCACCCACGGTGGCTGTTGCTG
JMFF004D21+           ATGCTGCATTACCGTTGCCGCCGCCGGGTATTGCATAGGCACCCACGGTGGCTGTTGCTG
JMFF027E18+           ATGCTGCATTACCGTTGCCGCCGCCGGGTATTGCATAGGCACCCACGGTGGCTGTTGCTG
JMFF051I11+           ATGCTGCATTACCGTTGCCGCCGCCGGGTATTGCATAGGCACCCACGGTGGCTGTTGCTG
JMFN025J06+           ATGCTGCATTACCGTTGCCGCCGCCGGGTATTGCATAGGCACCCACGGTGGCTGTTGCTG
JMSF007H18+           ATGCTGCATTACCGTTGCCGCCGCCGGGTATTGCATAGGCACCCACGGTGGCTGTTGCTG
JMSF020N06+           ATGCTGCATTACCGTNGCCGCCGCCGGGTATTGCATAGGCACCCACGGTGGCTGTTGCTG
JMFF029P10+           ATGCTGCATTACCGTTGCCGCCGCCGGGTATTGCATAGGCACCCACGGTGGCTGTTGCTG
                      ____________________________________________________________
consensus             ATGCTGCATTACCGTTGCCGCCGCCGGGTATTGCATAGGCACCCACGGTGGCTGTTGCTG
 
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JMSF038J22+           CTGCGCCGCCGCCGCCACCGGAACAACCTTCGCCCCAGCCCCCGTCGTCACCGCCTGCTT
JMFF004D21+           CTGCGCCGCCGCCGCCACCGGAACAACCTTCGCCCCAGCCCCCGTCGTCACCGCCTGCTT
JMFF027E18+           CTGCGCCGCCGCCGCCACCGGAACAACCTTCGCCCCAGCCCCCGTCGTCACCGCCTGCTT
JMFF051I11+           CTGCGCCGCCGCCGCCACCGGAACAACCTTCGCCCCAGCCCCCGTCGTCACCGCCTGCTT
JMFN025J06+           CTGCGCCGCCGCCGCCACCGGAACAACCTTCGCCCCAGCCCCCGTCGTCACCGCCTGCTT
JMSF007H18+           CTGCGCCGCCGCCGCCACCGGAACAACCTTCGCCCCAGCCCCCGTCGTCACCGCCTGCTT
JMSF020N06+           CTGCGCCGCCGCCGCCACCGGAACAACCTTCGCCCCAGCCCCCGTCGTCACCGCCTGCTT
JMFF029P10+           CTGCGCCGCCGCCGCCACCGGAACAACCTTCGCCCCAGCCCCCGTCGTCACCGCCTGCTT
                      ____________________________________________________________
consensus             CTGCGCCGCCGCCGCCACCGGAACAACCTTCGCCCCAGCCCCCGTCGTCACCGCCTGCTT
 
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JMSF038J22+           TTGCTCCGCATCCTGATGCTTCTCCGCCTCGTGCTCGGGCTCTCGCGGCGACGGTGGTTG
JMFF004D21+           TTGCTCCGCATCCTGATGCTTCTCCGCCTCGTGCTCGGGCTCTCGCGGCGACGGTGGTTG
JMFF027E18+           TTGCTCCGCATCCTGATGCTTCTCCGCCTCGTGCTCGGGCTCTCGCGGCGACGGTGGTTG
JMFF051I11+           TTGCTCCGCATCCTGATGCTTCTCCGCCTCGTGCTCGGGCTCTCGCGGCGACGGTGGTTG
JMFN025J06+           TTGCTCCGCATCCTGATGCTTCTCCGCCTCGTGCTCGGGCTCTCGCGGCGACGGTGGTTG
JMFF023M09+                        TGATGCTTCTCCGCNTCGTGCTCGGGCTCTCGCGGCGACGGTGGTTG
JMSF007H18+           TTGCTCCGCATCCTGATGCTTCTCCGCCTCGTGCTCGGGCTCTCGCGGCGACGGTGGTTG
JMSF020N06+           TTGCTCCGCATCCTGATGCTTNTCCGCCTCGTGCTCGGGCTCTCGCGGCGACGGTGGTTG
JMFF029P10+           TTGCTCCGCATCCTGATGCTTCTCCGCCTCGTGCTCGGGCTCTCGCGGCGACGGTGGTTG
                      ____________________________________________________________
consensus             TTGCTCCGCATCCTGATGCTTCTCCGCCTCGTGCTCGGGCTCTCGCGGCGACGGTGGTTG
 
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JMSF038J22+           TTTATTCTCTTGCGATTCAGGACCTTTATCCGTTTGCATCTTCAAACTCGCTCTGTTTCT
JMFF004D21+           TTTATTCTCTTGCGATTCAGGACCTTTATCCGTTTGCATCTTCAAACTCGCTCTGTTTCT
JMFF027E18+           TTTATTCTCTTGCGATTCAGGACCTTTATCCGTTTGCATCTTCAAACTCGCTCTGTTTCT
JMFF051I11+           TTTATTCTCTTGCGATTCAGGACCTTTATCCGTTTGCATCTTCAAACTCGCTCTGTTTCT
JMFN025J06+           TTTATTCTCTTGCGATTCAGGACCTTTATCCGTTTGCATCTTCAAACTCGCT        
JMFF023M09+           TTTATTNTNTTGCGATTCAGGACCTTTATCCGTTTGCATNTTCAAACTCGCTCTGTTTCT
JMSF007H18+           TTTATTCTCTTGCGATTCAGGACCTTTATCCGTTTGCATCTTCAAACTCGCTCTGTTTCT
JMSF020N06+           TTTATTCTCTTGCGATTCAGGACCTTTATCCGTTTGCATCTTCAAACTCGCTCTGTTTCT
JMFF029P10+           TTTATTCTCTTGCGATTCAGGACCTTTATCCG-TTGCATCTTCAAACTCGCTCTGTTTCT
                      ____________________________________________________________
consensus             TTTATTCTCTTGCGATTCAGGACCTTTATCCGTTTGCATCTTCAAACTCGCTCTGTTTCT
 
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JMSF038J22+           GTTTCTCTCTCTCTCTCTCTCCCTGTAACCAAC                           
JMFF004D21+           GTTTCTCTCTCTCTCTCTCTCCCTGTAACCAACAAACT                      
JMFF027E18+           GTTTCTCTCTCTCTCTCTCTCCCTATAACC                              
JMFF051I11+           GTTTCTCTCTCTCTCTCTCTCCCTGTAACCAACAAACT                      
JMFF023M09+           GTTTCTCTCTCTCTCTCTCTCCCTGTAACCAACAAACT                      
JMSF007H18+           GTTTCTCTCTCTCTCTCTCTCCCTGTAACCAACAAACT                      
JMSF020N06+           GTTTCTCTCTCTCTCTCTCTCCCTGTAACCAACAAACT                      
JMFF029P10+           GTTTCTCTCTCTCTCTCTCTCCCTGTAACCAACAAACTACTGAAACCCTAGAGGAAATAT
                      ____________________________________________________________
consensus             GTTTCTCTCTCTCTCTCTCTCCCTGTAACCAACAAACTACTGAAACCCTAGAGGAAATAT