Contig 007400:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027O18Sequence527007400 (4)ref|XP_009796996.1|2e-32PREDICTED: TOM1-like protein 2 [Nicotiana sylvestris] ref|XP_009797003.1| PREDIC708001502 (4)ref|XP_009781390.1|5e-26PREDICTED: TOM1-like protein 2 [Nicotiana sylvestris]
JMSF016G18Sequence489007400 (4)ref|XP_009796996.1|8e-38PREDICTED: TOM1-like protein 2 [Nicotiana sylvestris] ref|XP_009797003.1| PREDIC770001502 (4)emb|CDP11965.1|5e-23unnamed protein product [Coffea canephora]
JMSF043D13Sequence732007400 (4)emb|CDP11965.1|9e-98unnamed protein product [Coffea canephora]783001502 (4)emb|CDP11965.1|2e-29unnamed protein product [Coffea canephora]
JMSF051E18Sequence692007400 (4)emb|CDP11965.1|5e-86unnamed protein product [Coffea canephora]741001502 (4)ref|XP_011102017.1|6e-11PREDICTED: LOW QUALITY PROTEIN: ADP-ribosylation factor-binding protein GGA3 [S

Alignment

This contig is upended


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JMSF043D13+                                                            CGGTGGAGTAA
                      ____________________________________________________________
consensus                                                              CGGTGGAGTAA
 
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JMSF043D13+           ATAAAGGAACGCTGTTTTCTTCACGGGGAGGAAATTCCACACCAAAAGCCTTCAGCTCAT
JMSF051E18+                                        GGAAATTCCACACCAAAAGCCTTCAGCTCAT
                      ____________________________________________________________
consensus             ATAAAGGAACGCTGTTTTCTTCACGGGGAGGAAATTCCACACCAAAAGCCTTCAGCTCAT
 
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JMSF043D13+           TATAGGCAGCATGGTATTGTGGAAACCGTCCTCTGGGTCCCCCTAAAGCTTCTTGCCATG
JMSF051E18+           TATAGGCAGCATGGTATTGTGGAAACCGTCNTCTGGGTCCCCCTAAAGCTTCTTGCCATG
                      ____________________________________________________________
consensus             TATAGGCAGCATGGTATTGTGGAAACCGTCCTCTGGGTCCCCCTAAAGCTTCTTGCCATG
 
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JMSF043D13+           TATCTATCAGAATCAAAATCTTTTCCCTCACATTCAAATCAGGCTTTTTCTTTACAATTT
JMSF051E18+           TATCTATCAGAATCAAAATCTTTTCCCTCACATTCAAATCAGGCTTTTTCTTTACAATTT
                      ____________________________________________________________
consensus             TATCTATCAGAATCAAAATCTTTTCCCTCACATTCAAATCAGGCTTTTTCTTTACAATTT
 
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JMSF043D13+           TCACCATGTCATGCAAAATGTCCCGCTCAACAATCTGCTGAAATATATTCTCTCCACAGT
JMSF051E18+           TCACCATGTCATGCAAAATGTCCCGCTCAACAATCTGCTGAAATATATTCTCTCCACAGT
JMSF016G18+                                                                CCACAGT
                      ____________________________________________________________
consensus             TCACCATGTCATGCAAAATGTCCCGCTCAACAATCTGCTGAAATATATTCTCTCCACAGT
 
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JMSF043D13+           TTTTGCTAAGAGTCTCAAGTACAAATAATGCAAGAAGTTGTATTTTAGGGTTTTTATTCC
JMSF051E18+           TTTTGCTAAGAGTCTCAAGTACAAATAATGCAAGAAGTTGTATTTTAGGGTTTTTATTCC
JMSF016G18+           TTTTGCTAAGAGTCTCAAGTACAAATAATGCAAGAAGTTGTATTTTAGGGTTTTTATTCC
JMFF027O18+                        CTCAAGTACAAATAATGCAAGAAGTTGTATTTTAGGGTTTTTATTCC
                      ____________________________________________________________
consensus             TTTTGCTAAGAGTCTCAAGTACAAATAATGCAAGAAGTTGTATTTTAGGGTTTTTATTCC
 
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JMSF043D13+           CAAGACGTTTCTTTAGAATCTTGAGTGCATCCTTCGCTTGCCCAGGGTTGATGTTAATAA
JMSF051E18+           CAAGACGTTTCTTTAGAATCTTGAGTGCATCCTTCGCTTGCCCAGGGTTGATGTTAATAA
JMSF016G18+           CAAGACGTTTCTTTAGAATCTTGAGTGCATCCTTCGCTTGCCCAGGGTTGATGTTAATAA
JMFF027O18+           CAAGACGTTTCTTTAGAATCTTGAGTGCATCCTTCGCTTCCCCAGGGTTGATGTTAATAA
                      ____________________________________________________________
consensus             CAAGACGTTTCTTTAGAATCTTGAGTGCATCCTTCGCTTGCCCAGGGTTGATGTTAATAA
 
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JMSF043D13+           TATCACAAAGCTCAATATTAACTGCCCAGTCAGGACCAATCAACATGTCACTTGTGGCCC
JMSF051E18+           TATCACAAAGCTCAATATTAACTGCCCAGTCAGGACCAATCAACATGTCACTTGTGGCCC
JMSF016G18+           TATCACAAAGCTCAATATTAACTGCCCAGTCAGGACCAATCAACATGTCACTTGTGGCCC
JMFF027O18+           TATCACAAAGCTCAATATTAACTGCCCAGTCAGGACCAATCAACATGTCACTTGTGGCCC
                      ____________________________________________________________
consensus             TATCACAAAGCTCAATATTAACTGCCCAGTCAGGACCAATCAACATGTCACTTGTGGCCC
 
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JMSF043D13+           TCTCAGCACAAGCCGCCGCATCGTTCGCCATATTTGTACAATCTCCCAAGTCCGTTAAAT
JMSF051E18+           TCTCAGCACAAGCCGCCGCATCGTTCGCCATATTTGTACAATCTCCCAAGTCCGTTAAAT
JMSF016G18+           TCTCAGCACAAGCCGCCGCATCGTTCGCCATATTTGTACAATCTCCCAAGTCCGTTAAAT
JMFF027O18+           TCTCAGCACAAGCCGCCGCATCGTTCGCCATATTTGTACAATCTCCCAAGTCCGTTAAAT
                      ____________________________________________________________
consensus             TCTCAGCACAAGCCGCCGCATCGTTCGCCATATTTGTACAATCTCCCAAGTCCGTTAAAT
 
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JMSF043D13+           TAACACTGCTTTGATCTCCTTAGTAAGACACCAAACACAAAAAAAAATCCACTAATTGAA
JMSF051E18+           TAACACTGCTTTGATCTCCTTAGTAAGACACCAAACACAAAAAAAAATCCACTAATTGAA
JMSF016G18+           TAACACTGCTTTGATCTCCTTAGTAAGACACCAAACACAAAAAAAAATCCACTAATTGAA
JMFF027O18+           TAACACTGCTTTGATCTCCTTAGTAAGACACCAAACACAAAAAAAAATCCACTAATTGAA
                      ____________________________________________________________
consensus             TAACACTGCTTTGATCTCCTTAGTAAGACACCAAACACAAAAAAAAATCCACTAATTGAA
 
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JMSF043D13+           GAATGCAACAAAGCAAGAACCGAGTATAAGTAGAGCTTCAAAGTCCAAAATCCACCAAGA
JMSF051E18+           GAATGCAACAAAGCAAGAACCGAGTATAAGTAGAGCTTCAAAGTCCAAAATCCACCAAGA
JMSF016G18+           GAATGCAACAAAGCAAGAACCGAGTATAAGTAGAGCTTCAAAGTCCAAAATCCACCAAGA
JMFF027O18+           GAATGCAACAAAGCAAGAACCGAGTATAAGTAGAGCTTCAAAGTCCAAAATCCACCAAGA
                      ____________________________________________________________
consensus             GAATGCAACAAAGCAAGAACCGAGTATAAGTAGAGCTTCAAAGTCCAAAATCCACCAAGA
 
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JMSF043D13+           AAAAATAGAAAGAACCCCAATCGCTAAAATCCTCAAAATCATGCTCTTCCCTCACAAAAA
JMSF051E18+           AAAAATAGAAAGAACCCCAATCGCTAAAATCCTCAAAATCATGCTCTTCCCTCACAAAAA
JMSF016G18+           AAAAATAGAAAGAACCCCAATCGCTAAAATCCTCAAAATCATGCTCTTCCCTCACAAAAA
JMFF027O18+           AAAAATAGAAAGAACCCCAATCGCTAAAATCCTCAAAATCATGCTCTTCCCTCACAAAAA
                      ____________________________________________________________
consensus             AAAAATAGAAAGAACCCCAATCGCTAAAATCCTCAAAATCATGCTCTTCCCTCACAAAAA
 
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JMSF043D13+           TAAAGAGATGAAAAATCCAGTACAGAGACGATCGAGATTGGAATCATCAGAGAAAAC   
JMSF051E18+           TAAAGAGATGAAAAATCCAGTACAGAGACGATCGAGATTGGAATCATCAGAGAAAAC   
JMSF016G18+           TAAAGAGATGAAAAATCCAGTACAGAGACGATCGAGATTGGAATCATCAGAGAAAAC   
JMFF027O18+           TAAAGAGATGAAAAATCCAGTACAGAGACGATCGAGATTGGAATCATCAGAGAAAACCCC
                      ____________________________________________________________
consensus             TAAAGAGATGAAAAATCCAGTACAGAGACGATCGAGATTGGAATCATCAGAGAAAACCCC
 
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JMFF027O18+           AAAAGGAGAAGGGCAGGATCTTTGACATTTATTACCTGAGCGAGAATGAATAATGGCACT
                      ____________________________________________________________
consensus             AAAAGGAGAAGGGCAGGATCTTTGACATTTATTACCTGAGCGAGAATGAATAATGGCACT