Contig 007382:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024C10Sequence436007382 (4)ref|XP_009769063.1|2e-61PREDICTED: probable prefoldin subunit 2 [Nicotiana sylvestris] ref|XP_009769064.
JMSF038E13Sequence661007382 (4)ref|XP_007141032.1|3e-80hypothetical protein PHAVU_008G161600g [Phaseolus vulgaris] ref|XP_007141033.1| 640007382 (4)ref|XP_007141032.1|2e-80hypothetical protein PHAVU_008G161600g [Phaseolus vulgaris] ref|XP_007141033.1|
JMSF042L12Sequence394007382 (4)ref|XP_009769063.1|7e-63PREDICTED: probable prefoldin subunit 2 [Nicotiana sylvestris] ref|XP_009769064.666004053 (10)ref|XP_010053920.1|1e-38PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Eucalyptus grandis] gb|KCW

Alignment

This contig is upended


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JMSF038E13+                                                                    CCC
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consensus                                                                      CCC
 
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JMSF038E13+           CATAAAGAAAACAAATAAAAAGCAAGGTTACAGTCTTACAGATACATCTTGCTAAAATCT
rJMSF038E13-                                          GTCTTACAGATACATCTTGCTAAAATCT
                      ____________________________________________________________
consensus             CATAAAGAAAACAAATAAAAAGCAAGGTTACAGTCTTACAGATACATCTTGCTAAAATCT
 
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JMSF038E13+           GATTTTAGCACACAAAACACTCCCAAAAAAATGAAAATAGTTTTTAATAACAGTATTGAT
rJMSF038E13-          GATTTTAGCACACAAAACACTCCCAAAAAAATGAAAATAGTTTTTAATAACAGTATTGAT
                      ____________________________________________________________
consensus             GATTTTAGCACACAAAACACTCCCAAAAAAATGAAAATAGTTTTTAATAACAGTATTGAT
 
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JMSF038E13+           CTATTATTCATTTGCACCAGCAGCAGGACCAACAAGTACTCCCTGTGCAGACCCTTCCTT
rJMSF038E13-          CTATTATTCATTTGCACCAGCAGCAGGACCAACAAGTACTCCCTGTGCAGACCCTTCCTT
                      ____________________________________________________________
consensus             CTATTATTCATTTGCACCAGCAGCAGGACCAACAAGTACTCCCTGTGCAGACCCTTCCTT
 
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JMSF038E13+           TCGCCCACTCTCATCCTGCACTTCATCCTCTGATTTCCGGATCCTTATTTTGTACTTTGC
JMSF042L12+                                                        TATTTTGTACTTTGC
rJMSF038E13-          TCGCCCACTCTCATCCTGCACTTCATCCTCTGATTTCCGGATCCTTATTTTGTACTTTGC
JMFF024C10+                                                        TATTTTGTACTTTGC
                      ____________________________________________________________
consensus             TCGCCCACTCTCATCCTGCACTTCATCCTCTGATTTCCGGATCCTTATTTTGTACTTTGC
 
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JMSF038E13+           CTCGAACTCAGAAATTTCTTTTTTCTTCTTCTCCAAGGCTTCGTTGAGCCGAGCAATCAA
JMSF042L12+           CTCGAACTCAGAAATTTCTTTTTTCTTCTTCTCCAAGGCTTCGTTGAGCCGAGCAATCAA
rJMSF038E13-          CTCGAACTCAGAAATTTCTTTTTTCTTCTTCTCCAAGGCTTCGTTGAGCCGAGCAATCAA
JMFF024C10+           CTCGAACTCAGAAATTTCTTTTTTCTTCTTCTCCAAGGCTTCGTTGAGCCGAGCAATCAA
                      ____________________________________________________________
consensus             CTCGAACTCAGAAATTTCTTTTTTCTTCTTCTCCAAGGCTTCGTTGAGCCGAGCAATCAA
 
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JMSF038E13+           TTCCTCAATCCCCTCCTTATTGCGCTGAACAGCGGGCAACACTTCTTTGATGCTTCTCTC
JMSF042L12+           TTCCTCAATCCCCTCCTTATTGCGCTGAACAGCGGGCAACACTTCTTTGATGCTTCTCTC
rJMSF038E13-          TTCCTCAATCCCCTCCTTATTGCGCTGAACAGCGGGCAACACTTCTTTGATGCTTCTCTC
JMFF024C10+           TTCCTCAATCCCCTCCTTATTGCGCTGAACAGCGGGCAACACTTATTTGATGCTTCTCTC
                      ____________________________________________________________
consensus             TTCCTCAATCCCCTCCTTATTGCGCTGAACAGCGGGCAACACTTCTTTGATGCTTCTCTC
 
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JMSF038E13+           AACAAGAACACCTCCAATCAACCTGTAGCACCGCCTTGAAGGATCAAGTGGCTGTATAGC
JMSF042L12+           AACAAGAACACCTCCAATCAACCTGTAGCACCGCCTTGAAGGATCAAGTGGCTGTATAGC
rJMSF038E13-          AACAAGAACACCTCCAATCAACCTGTAGCACCGCCTTGAAGGATCAAGTGGCTGTATAGC
JMFF024C10+           AACAAGAACACCTCCAATCAACCTGTAGCACCGCCTTGAAGGATCAAGTGGCTGTATAGC
                      ____________________________________________________________
consensus             AACAAGAACACCTCCAATCAACCTGTAGCACCGCCTTGAAGGATCAAGTGGCTGTATAGC
 
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JMSF038E13+           ATTCATCACGAGACTGTGTTCACTAACTTCCATCTCCAGTTCGGTGATTTTGGAATAAAT
JMSF042L12+           ATTCATCACGAGACTGTGTTCACTAACTTCCATCTCCAGTTCGGTGATTTTGGAATAAAT
rJMSF038E13-          ATTCATCACGAGACTGTGTTCACTAACTTCCATCTCCAGTTCGGTGATTTTGGAATAAAT
JMFF024C10+           ATTCATCACGAGACTGTGTTCACTAACTTCCATCTCCAGTTCGGTGATTTTGGAATAAAT
                      ____________________________________________________________
consensus             ATTCATCACGAGACTGTGTTCACTAACTTCCATCTCCAGTTCGGTGATTTTGGAATAAAT
 
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JMSF038E13+           TTGGTTCATCTCAGATCTTAAATTACCATATATGCTCGCAACCGCTTGCTCATTAATTGG
JMSF042L12+           TTGGTTCATCTCAGATCTTAAATTACCATATATGCTCGCAACCGCTTGCTCATTAATTGG
rJMSF038E13-          TTGGTTCATCTCAGATCTTAAATTACCATATATGCTCGCAACCGCTTGCTCATTAATTGG
JMFF024C10+           TTGGTTCATCTCAGATCTTAAATTACCATATATGCTCGCAACCGCTTGCTCATTAATTGG
                      ____________________________________________________________
consensus             TTGGTTCATCTCAGATCTTAAATTACCATATATGCTCGCAACCGCTTGCTCATTAATTGG
 
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JMSF038E13+           TTCCTTCACATTTTCAGCTTTTGCAGCCATGTATGTATTACAGCGTCCAACCTCGCGGCG
JMSF042L12+           TTCCTTCACATTTTCAGCTTTTGCAGCCATGTATGTATTACAGCGTCCAACCTCGCGGCG
rJMSF038E13-          TTCCTTCACATTTTCAGCTTTTGCAGCCATGTATGTATTACAGCGTCCAACCTCGCGGCG
JMFF024C10+           TTCCTTCACATTTTCAGCTTTTGCAGCCATGTATGTATTACAGCGTCCAACCTCGCGGCG
                      ____________________________________________________________
consensus             TTCCTTCACATTTTCAGCTTTTGCAGCCATGTATGTATTACAGCGTCCAACCTCGCGGCG
 
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JMSF038E13+           TCGTCGGGATGCGATTCTGTCAAGAGGAGTTGAAGAATGAAGACGATGCGTATGAAC   
JMSF042L12+           TCGTCGGGATGCGATTCT                                          
rJMSF038E13-          TCGTCGGGATGCGATTCTGTCAAGAGGAGTTGAAGAATGAAGACGATGCGTATGAAC   
JMFF024C10+           TCGTCGGGATGCGATTCTGTCAAGAGGAGTTGAAGAATGAAGACGATGCGTATGAACGAT
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consensus             TCGTCGGGATGCGATTCTGTCAAGAGGAGTTGAAGAATGAAGACGATGCGTATGAACGAT