Contig 007361:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033E07+                                                                 TCAAAT
                      ____________________________________________________________
consensus                                                                   TCAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033E07+           TTCTGTACAAATAGTCTCTCATTATAACTTGGTTGCCCTGAGACACGGATAAGATGCAGT
                      ____________________________________________________________
consensus             TTCTGTACAAATAGTCTCTCATTATAACTTGGTTGCCCTGAGACACGGATAAGATGCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033E07+           TTGACAGCCCAGAACACATTGCAGTGGGAAGAAAGGAAGGAAAGAGCATAATTTATGATG
JMFN030M16+                                                                 ATGATG
                      ____________________________________________________________
consensus             TTGACAGCCCAGAACACATTGCAGTGGGAAGAAAGGAAGGAAAGAGCATAATTTATGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033E07+           AGCCAGCCATTCATAATGTTTCCATCTAAGAGGCTAAAACCCTCTCGATGGCATTGACGT
JMFN030M16+           AGCCAGCCATTCATAATGTTTCCATCTAAGAGGCTAAAACCCTCTCGATGGCATTGACGT
                      ____________________________________________________________
consensus             AGCCAGCCATTCATAATGTTTCCATCTAAGAGGCTAAAACCCTCTCGATGGCATTGACGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033E07+           AGAACTCCTTGGGCATGGTACCCTATGACAGAACCGCGTTTCTCCCCATTCTTGAACAGC
JMFN030M16+           AGAACTCCTTGGGCATGGTACCCTATGACAGAACCGCGTTTCTCCCCATTCTTGAACAGC
                      ____________________________________________________________
consensus             AGAACTCCTTGGGCATGGTACCCTATGACAGAACCGCGTTTCTCCCCATTCTTGAACAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033E07+           ATCACCACTGGCACAGCCTTGATATCATAGTCCTCAGCAATTTGCACGTCTGAATCCGCA
JMFN030M16+           ATCACCACTGGCACAGCCTTGATATCATAGTCCTCAGCAATTTGCACGTCTGAATCCGCA
                      ____________________________________________________________
consensus             ATCACCACTGGCACAGCCTTGATATCATAGTCCTCAGCAATTTGCACGTCTGAATCCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033E07+           TTGAGTACAAAGCATTTTAATCTTCCTGAATAATCAGTTGCAATTTCATCCATCACCCTA
JMFN030M16+           TTGAGTACAAAGCATTTTAATCTTCCTGAATAATCAGTTGCAATTTCATCCATCACCCTA
                      ____________________________________________________________
consensus             TTGAGTACAAAGCATTTTAATCTTCCTGAATAATCAGTTGCAATTTCATCCATCACCCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033E07+           TGGACCATCCGGCAGGGGCCGCACCAACTTGCATAAAATTCAACAAGAACAGGGACATCG
JMFN030M16+           TGGACCATCCGGCAGGGGCCGCACCAACTTGCATAAAATTCAACAAGAACAGGGACATCG
JMFF020N11+             GACCNTCCGGCAGGGGCCGCNCCAACTTGCATAAAATTCAACAAGAACAGGGACATCG
                      ____________________________________________________________
consensus             TGGACCATCCGGCAGGGGCCGCACCAACTTGCATAAAATTCAACAAGAACAGGGACATCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033E07+           CTGTTCAAAATCATTTTGTCCCATGACTTGCCAGTCACGACTGCAGCTTTGGCGTCACGA
JMFN030M16+           CTGTTCAAAATCATTTTGTCCCATGACTTGCCAGTCACGACTGCAGCTTTGGCGTCACGA
JMFF020N11+           CTGTTCAAAATCATTTTGTCCCATGACTTGCCAGTCACGACTGCAGCTTTGGCGTCNCGA
                      ____________________________________________________________
consensus             CTGTTCAAAATCATTTTGTCCCATGACTTGCCAGTCACGACTGCAGCTTTGGCGTCACGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033E07+           TGGCAGACCACGCGTAAATGGAAGGGGGACTTAGATTGTCGAGGCCTAACGTTCCGGTTG
JMFN030M16+           TGGCAGACCACGCGTAAATGGAAGGGGGACTTAGATTGTCGAGGCCTAACGTTCCGGTTG
JMFF020N11+           TGGCAGACCNCGCGTAAATGGAAGGGGGACTTAGATTGTCGAGGCCTAACGTTCCGGTTG
                      ____________________________________________________________
consensus             TGGCAGACCACGCGTAAATGGAAGGGGGACTTAGATTGTCGAGGCCTAACGTTCCGGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033E07+           AGCAGAAAGGAGCTGCCGATGCTTGCTCCGTTCAACTGCGGTGGAGAATTGGACGGTAAC
JMFN030M16+           AGCAGAAAGGAGCTGCCGATGCTTGCTCCGTTCAACTGCGGTGGAGAATTGGACGGTAAC
JMFF020N11+           AGCAGAAAGGAGCTGCCGATGCTTGCTCCGTTCAACTGCGGTGGAGAATTGGACGGTAAC
                      ____________________________________________________________
consensus             AGCAGAAAGGAGCTGCCGATGCTTGCTCCGTTCAACTGCGGTGGAGAATTGGACGGTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033E07+           GAACAGAGCGATCGTCGGC                                         
JMFN030M16+           GAACAGAGCGATCGTCGGCGGAGAGACGGAGGGAGCTGTATAAAGGGAGGAGTGATGAAG
JMFF020N11+           GAACAGAGCGATNGTCGGCGGAGAGACGGAGGGAGCTGTATAAAGGGAGGAGTGATGAAG
                      ____________________________________________________________
consensus             GAACAGAGCGATCGTCGGCGGAGAGACGGAGGGAGCTGTATAAAGGGAGGAGTGATGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030M16+           TATAGAGAAGTAGCCATTTACGCCCTCAAAATCTCAAAAAAAAAAAATGCAGAGATCATC
JMFF020N11+           TATAGAGAAGTAGCCATTTACGCCCTCAAAATNTC-AAAAAAAAAAATGCAGAGATCATC
                      ____________________________________________________________
consensus             TATAGAGAAGTAGCCATTTACGCCCTCAAAATCTCAAAAAAAAAAAATGCAGAGATCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030M16+           CGTATATATCTTTCGCCGCAAA                                      
JMFF020N11+           CGTATATATCTTTCGCCGCAAATATCTTTCAAATGAAAATCGACGTTTTCTTTGAGCAGC
                      ____________________________________________________________
consensus             CGTATATATCTTTCGCCGCAAATATCTTTCAAATGAAAATCGACGTTTTCTTTGAGCAGC