| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008N16 | Sequence | 519 | 007304 (7) | 707 | 024319 | ||||||
| JMFF032K20 | Sequence | 557 | 007304 (7) | ref|XP_007016698.1| | 9e-06 | RNA-binding family protein, putative isoform 1 [Theobroma cacao] ref|XP_00701669 | 717 | 008533 (10) | emb|CDP09683.1| | 3e-04 | unnamed protein product [Coffea canephora] |
| JMFN029K15 | Sequence | 617 | 007304 (7) | ref|XP_007016698.1| | 1e-19 | RNA-binding family protein, putative isoform 1 [Theobroma cacao] ref|XP_00701669 | |||||
| JMFS053H01 | Sequence | 632 | 007304 (7) | ref|XP_004228485.1| | 2e-23 | PREDICTED: UBP1-associated protein 2A [Solanum lycopersicum] ref|XP_004228486.1| | |||||
| JMFS060B05 | Sequence | 626 | 007304 (7) | emb|CAN80681.1| | 3e-47 | hypothetical protein VITISV_037734 [Vitis vinifera] | |||||
| JMFS114G06 | Sequence | 564 | 007304 (7) | emb|CAN80681.1| | 1e-26 | hypothetical protein VITISV_037734 [Vitis vinifera] | |||||
| JMSF024D15 | Sequence | 685 | 007304 (7) | ref|XP_004228485.1| | 7e-24 | PREDICTED: UBP1-associated protein 2A [Solanum lycopersicum] ref|XP_004228486.1| | 791 | 008533 (10) | ref|XP_004228485.1| | 1e-18 | PREDICTED: UBP1-associated protein 2A [Solanum lycopersicum] ref|XP_004228486.1| |
This contig is upended
. : . : . : . : . : . :
JMFS060B05+ ATGCATTCTTTTTTATGATTTTAATTT
____________________________________________________________
consensus ATGCATTCTTTTTTATGATTTTAATTT
. : . : . : . : . : . :
JMFS060B05+ TTAAGAATGGTTGACTGTTGAAGGCATTAAATGGTCCCTATTTGTATTATTGTAGGCTCA
____________________________________________________________
consensus TTAAGAATGGTTGACTGTTGAAGGCATTAAATGGTCCCTATTTGTATTATTGTAGGCTCA
. : . : . : . : . : . :
JMFS060B05+ AAAAACCAAAATAATGCACATGATAACCAGGTAATTTAATTGCAGAAGCAAATTACCAAT
____________________________________________________________
consensus AAAAACCAAAATAATGCACATGATAACCAGGTAATTTAATTGCAGAAGCAAATTACCAAT
. : . : . : . : . : . :
JMFS060B05+ AAAGCACCAAATAGTGATATACCTTCTTGGCTCCACTCCAGTGCTTGAAAAGTATAAAGG
____________________________________________________________
consensus AAAGCACCAAATAGTGATATACCTTCTTGGCTCCACTCCAGTGCTTGAAAAGTATAAAGG
. : . : . : . : . : . :
JMFS060B05+ CGTAACCTTTAGATTTCCCTGAGACCTTATCGGTAACGGCCTTGCAATCCTCAATCTCCC
JMSF024D15+ TGCAATCCTCAATCTCCC
____________________________________________________________
consensus CGTAACCTTTAGATTTCCCTGAGACCTTATCGGTAACGGCCTTGCAATCCTCAATCTCCC
. : . : . : . : . : . :
JMFS060B05+ CATATTTCCCAAAGACATTGGTTAGGGTTTCAGTTGTTGTATCCCAACCAAGACCGTGCA
JMFN029K15+ TTCCCAAAGACATTGGTTAGGGTTTCAGTTG-TGTATCCCAACCAAGACCGTGCA
JMFS053H01+ TTCCCAAAGACATTGGTTAGGGTTTCAGTTGTTGTATCCCAACCAAGACCGTGCA
JMFS114G06+ TTCCCAAAGACATTGGTTAGGGTTTCAGTTGTTGTATCCCAACCAAGACCGTGCA
JMSF024D15+ CATA-TTCCCAAAGACATTGGTTAGGGTTTCAGTTGTTGTATCCCAACCAAGACCGTGCA
____________________________________________________________
consensus CATATTTCCCAAAGACATTGGTTAGGGTTTCAGTTGTTGTATCCCAACCAAGACCGTGCA
. : . : . : . : . : . :
JMFS060B05+ CGAAAATTTTCCGGTGTGCTGGATCTTTATCGGCCCATTTCCTAATATTTTCCATGAAAT
JMFN029K15+ CGAAAATTTTCCGGTGTGCTGGATCTTTATCGGCCCATTTCCTAATATTTTCCATGAAAT
JMFS053H01+ CGAAAATTTTCCGGTGTGCTGGATCTTTATCGGCCCATTTCCTAATATTTTCCATGAAAT
JMFS114G06+ CGAAAATTTTCCGGTGTGCTGGATCTTTATCGGCCCATTTCCTAATATTTTCCATGAAAT
JMSF024D15+ CGAAAATTTTCCGGTGTGCTGGATCTTNATCGGCCCATTTCCTAATATTTTCCATGAAAT
JMFF032K20+ AATATTTTCCATGAAAT
____________________________________________________________
consensus CGAAAATTTTCCGGTGTGCTGGATCTTTATCGGCCCATTTCCTAATATTTTCCATGAAAT
. : . : . : . : . : . :
JMFS060B05+ CTGGGTGTTTGGTCACGGCCTCTTGAATTATGACTTTAAGCTGGTCCTTCGAGAATGGTT
JMFN029K15+ CTGGGTGTTTGGTCACGGCCTCTTGAATTATGACTTTAAGCTGGTCCTTCGAGAATGGTT
JMFS053H01+ CTGGGTGTTTGGTCACGGCCTCTTGAATTATGACTTTAAGCTGGTCCTTCGAGAATGGTT
JMFS114G06+ CTGGGTGTTTGGTCACGGCCTCTTGAATTATGACTTTAAGCTGGTCCTTCGAGAATGGTT
JMSF024D15+ CTGGGTGTTTGGTCACGGCCTCTTGAATTATGACTTTAAGCTGGTCCTTCGAGAATGGTT
JMFF032K20+ CTGGGTGTTTGGTCACGGCCTCTTGAATTATGACTTTAAGCTGGTCCTTCGAGAATGGTT
JMFF008N16+ CTTGAATTATGACTTTAAGCTGGTCCTTCGAGAATGGTT
____________________________________________________________
consensus CTGGGTGTTTGGTCACGGCCTCTTGAATTATGACTTTAAGCTGGTCCTTCGAGAATGGTT
. : . : . : . : . : . :
JMFS060B05+ CCAGAACCTTCTCGAGTGGCTCATCGTCGAATTCCTCAATCCCCTCAGCCTTCTTCCCCT
JMFN029K15+ CCAGAACCTTCTCGAGTGGCTCATCGTCGAATTCCTCAATCCCCTCAGCCTTCTTCCCCT
JMFS053H01+ CCAGAACCTTCTCGAGTGGCTCATCGTCGAATTCCTCAATCCCCTCAGCCTTCTTCCCCT
JMFS114G06+ CCAGAACCTTCTCGAGTGGCTCATCGTCGAATTCCTCAATCCCCTCAGCCTTCTTCCCCT
JMSF024D15+ CCAGAACCTTCTCGAGTGGCTCATCGTCGAATTCCTCAATCCCCTCAGCCTTCTTCCCCT
JMFF032K20+ CCAGAACCTTCTCGAGTGGCTCATCGTCGAATTCCTCAATCCCCTCAGCCTTCTTCCCCT
JMFF008N16+ CCAGAACCTTCTCGAGTGGCTCATCGTCGAATTCCTCAATCCCCTCAGCCTTCTTCCCCT
____________________________________________________________
consensus CCAGAACCTTCTCGAGTGGCTCATCGTCGAATTCCTCAATCCCCTCAGCCTTCTTCCCCT
. : . : . : . : . : . :
JMFS060B05+ CGCCGTTAGCTTTTCCAGTTGAAACGGCATCGTTTGACGGGTTTTCTTTCACAAGCTCCG
JMFN029K15+ CGCCGTTAGCTTTTCCAGTTGAAACGGCATCGTTTGACGGGTTTTCTTTCACAAGCTCCG
JMFS053H01+ CGCCGTTAGCTTTTCCAGTTGAAACGGCATCGTTTGACGGGTTTTCTTTCACAAGCTCCG
JMFS114G06+ CGCCGTTAGCTTTTCCAGTTGAAACGGCATCGTTTGACGGGTTTTCTTTCACAAGCTCCG
JMSF024D15+ CGCCGTTAGCTTTTCCAGTTGAAACGGCATCGTTTGACGGGTTTTCTTTCACAAGCTCCG
JMFF032K20+ CGCCGTTAGCTTTTCCAGTTGAAACGGCATCGTTTGACGGGTTTTCTTTCACAAGCTCCG
JMFF008N16+ CGCCGTTAGCTTTTCCAGTTGAAACGGCATCGTTTGACGGGTTTTCTTTCACAAGCTCCG
____________________________________________________________
consensus CGCCGTTAGCTTTTCCAGTTGAAACGGCATCGTTTGACGGGTTTTCTTTCACAAGCTCCG
. : . : . : . : . : . :
JMFS060B05+ CATCGCTTTTCGAAACATCTGCTTCCATACTTTCCGGCTTCTCCTCTTCTTCGCCCTCT
JMFN029K15+ CATCGCTTTTCGAAACATCTGCTTCCATACTTTCCGGCTTCTCCTCTTCTTCGCCCTCTT
JMFS053H01+ CATCGCTTTTCGAAACATCTGCTTCCATACTTTCCGGCTTCTCCTCTTCTTCGCCCTCTT
JMFS114G06+ CATCGCTTTTCGAAACATCTGCTTCCATACTTTCCGGCTTCTCCTCTTCTTCGCCCTCTT
JMSF024D15+ CATCGCTTTTCGAAACATCTGCTTCCATACTTTCCGGCTTCTCCTCTTCTTCGCCCTCTT
JMFF032K20+ CATCGCTTTTCGAAACATCTGCTTCCATACTTTCCGGCTTCTCCTCTTCTTCGCCCTCTT
JMFF008N16+ CATCGCTTTTCGAAACATCTGCTTCCATACTTTCCGGCTTCTCCTCTTCTTCGCCCTCTT
____________________________________________________________
consensus CATCGCTTTTCGAAACATCTGCTTCCATACTTTCCGGCTTCTCCTCTTCTTCGCCCTCTT
. : . : . : . : . : . :
JMFN029K15+ CCTCTTCCTCTTCCTCTTCCTCTCCCTCTTCTTCGGGATCCGCTTCTTCGACTTCCTCTT
JMFS053H01+ CCTCTTCCTCTTCCTCTTCCTCTCCCTCTTCTTCGGGATCCGCTTCTTCGACTTCCTCTT
JMFS114G06+ CCTCTTCCTCTTCCTCTTCCTCTCCCTCTTCTTCGGGATCCGCTTCTTCGACTTCCTCTT
JMSF024D15+ CCTCTTCCTCTTCCTCTTCCTCTCCCTCTTGTTCGGGATCCGCTTCTTCGACTTCCTCTT
JMFF032K20+ CCTCTTCCTCTTCCTCTTCCTCTCCCTCTTCTTCGGGATCCGCTTCTTCGACTTCCTCTT
JMFF008N16+ CCTCTTCCTCTTCCTCTTCCTCTCCCTCTTCTTCGGGATCCGCTTCTTCGACTTCCTCTT
____________________________________________________________
consensus CCTCTTCCTCTTCCTCTTCCTCTCCCTCTTCTTCGGGATCCGCTTCTTCGACTTCCTCTT
. : . : . : . : . : . :
JMFN029K15+ CCTCTTCCTCTTCCACTTCTTCTTCTACTTCTTCTACCTCTTGTTCTGGTTCTTCATTGG
JMFS053H01+ CCTCTTCCTCTTCCACTTCTTCTTCTACTTCTTCTACCTCTTGTTCTGGTTCTTCATTGG
JMFS114G06+ CCTCTTCCTCTTCCACTTCTTCTTCTACTTCTTCTACCTCTTGTTCTGGTTCTTCATTGG
JMSF024D15+ CCTCTTCCTCTTCCACTTCTTCTTCTACTTCTTCTACCTCTTGTTCTGGTTCTTCATTGG
JMFF032K20+ CCTCTTCCTCTTCCACTTCTTCTTCTACTTCTTCTACCTCTTGTTCTGGTTCTTCATTGG
JMFF008N16+ CCTCTTCCTCTTCCACTTCTTCTTCTACTTCTTCTACCTCTTGTTCTGGTTCTTCATTGG
____________________________________________________________
consensus CCTCTTCCTCTTCCACTTCTTCTTCTACTTCTTCTACCTCTTGTTCTGGTTCTTCATTGG
. : . : . : . : . : . :
JMFN029K15+ GTGCTTCCAGTTGGGGCTCAGGGTCGGGTTGGGGCTGCTCCGGCTCTTGAATTGGGGTTG
JMFS053H01+ GTGCTTCCAGTTGGGGCTCAGGGTCGGGTTGGGGCTGCTCCGGCTCTTGAATTGGGGTTG
JMFS114G06+ GTGCTTCCAGTTGGGGCTCAGGGTCGGGTTGGGGCTGCTCCGGCTCTTGAATTGGGGTTG
JMSF024D15+ GTGCTTCCAGTTGGGGCTCAGGGTCGGGTTGGGGCTGCTCCGGCTCTTGAATTGGGGTTG
JMFF032K20+ GTGCTTCCAGTTGGGGCTCAGGGTCGGGTTGGGGCTGCTCCGGCTCTTGAATTGGGGTTG
JMFF008N16+ GTGCTTCCAGTTGGGGCTCAGGGTCGGGTTGGGGCTGCTCCGGCTCTTGAATTGGGGTTG
____________________________________________________________
consensus GTGCTTCCAGTTGGGGCTCAGGGTCGGGTTGGGGCTGCTCCGGCTCTTGAATTGGGGTTG
. : . : . : . : . : . :
JMFN029K15+ GTTCTGGTTCGATTTCGGGCTGGTATGAAGCTCGGCTCTTCCGCTTCTTGGCCATGGCGG
JMFS053H01+ GTTCTGGTTCGATTTCGGGCTGGTATGAAGCTCGGCTCTTCCGCTTCTTGGCCATGGCGG
JMFS114G06+ GTTCTGGTTCGATTTCG
JMSF024D15+ GTTCTGGTTCGATTTCGGGCTGGTATGAAGCTCGGCTCTTCCGCTTCTTGGCCATGGCGG
JMFF032K20+ GTTCTGGTTCGATTTCGGGCTGGTATGAAGCTCGGCTCTTCCGCTTCTTGGCCATGGCGG
JMFF008N16+ GTTCTGGTTCGATTTCGGGCTGGTATGAAGCTCGGCTCTTCCGCTTCTTGGCCATGGCGG
____________________________________________________________
consensus GTTCTGGTTCGATTTCGGGCTGGTATGAAGCTCGGCTCTTCCGCTTCTTGGCCATGGCGG
. : . : . : . : . : . :
JMFN029K15+ CGCAGAAAAGGGTAGGGTTTTCC
JMFS053H01+ CGCAGAAAAGGGTAGGGTTTTCCGATTAGGGTTTCGG
JMSF024D15+ CGCAGAAAAGGGTAGGGTTTTCCGATTAGGGTTTCGGAGAACGAAAAGACT
JMFF032K20+ CGCAGAAAAGGGTAGGGTTTTCCGATTAGGGTTTCGGAGAACGAAAAGACTAGAAAAGAG
JMFF008N16+ CGCAGAAAAGGGTAGGGTTTTCCGATTAGGGTTTCGGAGAACGAAAAGACTAGAAAAGAG
____________________________________________________________
consensus CGCAGAAAAGGGTAGGGTTTTCCGATTAGGGTTTCGGAGAACGAAAAGACTAGAAAAGAG