Contig 007297:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006H03Sequence582007297 (3)ref|XP_011072417.1|7e-62PREDICTED: nuclear pore complex protein NUP35 [Sesamum indicum]778008602 (3)ref|XP_009801223.1|2e-84PREDICTED: nucleoporin NUP53 [Nicotiana sylvestris]
JMFF049F19Sequence558007297 (3)ref|XP_011072417.1|1e-60PREDICTED: nuclear pore complex protein NUP35 [Sesamum indicum]596008602 (3)ref|XP_009801223.1|2e-34PREDICTED: nucleoporin NUP53 [Nicotiana sylvestris]
JMSF038G18Sequence640007297 (3)ref|XP_011072417.1|2e-80PREDICTED: nuclear pore complex protein NUP35 [Sesamum indicum]928008602 (3)ref|XP_009801223.1|3e-72PREDICTED: nucleoporin NUP53 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF038G18+                                                                      C
                      ____________________________________________________________
consensus                                                                        C
 
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JMSF038G18+           CTTGCAACTTCCCTTGGTGGAGGTAGCATTATTAAAGCACCAGGCTGAACCACCCCTTCC
                      ____________________________________________________________
consensus             CTTGCAACTTCCCTTGGTGGAGGTAGCATTATTAAAGCACCAGGCTGAACCACCCCTTCC
 
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JMSF038G18+           ACCGGTGAGCCCTTCCCTTTATCATCAGGCTCGGCACTACCCCCACTCTTGGCAGGTGAC
JMFF049F19+                                            GCACTACCCCCACTCTTGGCAGGTGAC
JMFF006H03+                             TTATCATCAGGCTCGGCACTACCCCCACTCTTGGCAGGTGAC
                      ____________________________________________________________
consensus             ACCGGTGAGCCCTTCCCTTTATCATCAGGCTCGGCACTACCCCCACTCTTGGCAGGTGAC
 
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JMSF038G18+           CACCAACTTGAGCTCGCAACAGGATTATGTTGACTCTGATGCTGGTCCCTATTTCCCATT
JMFF049F19+           CACCAACTTGAGCTCGCAACAGGATTATGTTGACTCTGATGCTGGTCCCTATTTCCCATT
JMFF006H03+           CACCAACTTGAGCTCGCAACAGGATTATGTTGACTCTGATGCTGGTCCCTATTTCCCATT
                      ____________________________________________________________
consensus             CACCAACTTGAGCTCGCAACAGGATTATGTTGACTCTGATGCTGGTCCCTATTTCCCATT
 
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JMSF038G18+           ACAGCATATGCCGTGCTTGCCTCAGACTTGTTACTCTTAGGAGTCCAAAAATCCCTACTA
JMFF049F19+           ACAGCATATGCCGTGCTTGCCTCAGACTTGTTACTCTTAGGAGTCCAAAAATCCCTACTA
JMFF006H03+           ACAGCATATGCCGTGCTTGCCTCAGACTTGTTACTCTTAGGAGTCCAAAAATCCCTACTA
                      ____________________________________________________________
consensus             ACAGCATATGCCGTGCTTGCCTCAGACTTGTTACTCTTAGGAGTCCAAAAATCCCTACTA
 
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JMSF038G18+           GCACCTTGAACTGGTGTCCTAGGATCAGATTTCCCCTCCGAGGACATAGGATAATCTGGA
JMFF049F19+           GCACCTTGAACTGGTGTCCTAGGATCAGATTTCCCCTCCGAGGACATAGGATAATCTGGA
JMFF006H03+           GCACCTTGAACTGGTGTCCTAGGATCAGATTTCCCCTCCGAGGACATAGGATAATCTGGA
                      ____________________________________________________________
consensus             GCACCTTGAACTGGTGTCCTAGGATCAGATTTCCCCTCCGAGGACATAGGATAATCTGGA
 
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JMSF038G18+           ATCCCAGATTCCGGAGAAAAGTCAGACCGGTCTTCAAGTGTGAACATAGGGGGTGGCGGG
JMFF049F19+           ATCCCAGATTCCGGAGAAAAGTCAGACCGGTCTTCAAGTGTGAACATAGGGGGTGGCGGG
JMFF006H03+           ATCCCAGATTCCGGAGAAAAGTCAGACCGGTCTTCAAGTGTGAACATAGGGGGTGGCGGG
                      ____________________________________________________________
consensus             ATCCCAGATTCCGGAGAAAAGTCAGACCGGTCTTCAAGTGTGAACATAGGGGGTGGCGGG
 
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JMSF038G18+           AGATCAGAATTCGAAAAATTCTCTCGCCATAGAGCCGAAACAGCTGCTGCTTGACCTGGA
JMFF049F19+           AGATCAGAATTCGAAAAATTCTCTCGCCATAGAGCCGAAACAGCTGCTGCTTGACCTGGA
JMFF006H03+           AGATCAGAATTCGAAAAATTCTCTCGCCATAGAGCCGAAACAGCTGCTGCTTGACCTGGA
                      ____________________________________________________________
consensus             AGATCAGAATTCGAAAAATTCTCTCGCCATAGAGCCGAAACAGCTGCTGCTTGACCTGGA
 
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JMSF038G18+           GTCGTAAATTTACCAGACGATTTTCGAGAAGAAACAGGCGTCGCTAAATCCTGGAAGAAC
JMFF049F19+           GTCGTAAATTTACCAGACGATTTTCGAGAAGAAACAGGCGTCGCTAAATCCTGGAAGAAC
JMFF006H03+           GTCGTAAATTTACCAGACGATTTTCGAGAAGAAACAGGCGTCGCTAAATCCTGGAAGAAC
                      ____________________________________________________________
consensus             GTCGTAAATTTACCAGACGATTTTCGAGAAGAAACAGGCGTCGCTAAATCCTGGAAGAAC
 
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JMSF038G18+           AATGACTGCCTTGTAGATTTCGGCGTTCTCTGCACCGTTGAATTCATTTCCCTATACACT
JMFF049F19+           AATGACTGCCTTGTAGATTTCGGCGTTCTCTGCACCGTTGAATTCATTTCCCTATACACT
JMFF006H03+           AATGACTGCCTTGTAGATTTCGGCGTTCTCTGCACCGTTGAATTCATTTCCCTATACACT
                      ____________________________________________________________
consensus             AATGACTGCCTTGTAGATTTCGGCGTTCTCTGCACCGTTGAATTCATTTCCCTATACACT
 
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JMSF038G18+           ACCTGAATATGGCGAAGGAGTTGAAGGAAAGCTTGAAAGCGGGGAGTTCAGTAGGCAATT
JMFF049F19+           ACCTGAATATGGCGAAGGAGTTGAAGGAAAGCTTGAAAGCGGGGAGCTCAGTAGGCAATT
JMFF006H03+           ACCTGAATATGGCGAAGGAGTTGAAGGAAAGCTTGAAAGCGGGGAGCTCAGTAGGCAATT
                      ____________________________________________________________
consensus             ACCTGAATATGGCGAAGGAGTTGAAGGAAAGCTTGAAAGCGGGGAGCTCAGTAGGCAATT
 
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JMSF038G18+           ATATGCGTTTGCCTCGTCTAAGTTGCTGACACGCGACT                      
JMFF049F19+           ATATGCGTTTGCCTCGTCTAAGTTGCTGACACGCGACTGACGCGACGATGG         
JMFF006H03+           ATATGCGTTTGCCTCGTCTAAGTTGCTGACACGCGACTGACGCGACGATGGAAAAACCCT
                      ____________________________________________________________
consensus             ATATGCGTTTGCCTCGTCTAAGTTGCTGACACGCGACTGACGCGACGATGGAAAAACCCT