clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF004E14 | Sequence | 334 | 007284 (4) | gb|AHL44983.1| | 9e-28 | 4-coumarate:coenzyme A ligase 4 [Fraxinus mandshurica] | 805 | 001294 (4) | ref|XP_009603383.1| | 6e-134 | PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana tomentosiformis] |
JMFF035B02 | Sequence | 540 | 007284 (4) | ref|XP_009786809.1| | 2e-64 | PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana sylvestris] | 728 | 001294 (4) | ref|XP_009603383.1| | 2e-108 | PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana tomentosiformis] |
JMSF001K20 | Sequence | 294 | 007284 (4) | ref|XP_007016850.1| | 4e-26 | AMP-dependent synthetase and ligase family protein isoform 2, partial [Theobrom | 711 | 001294 (4) | ref|XP_009603383.1| | 3e-111 | PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana tomentosiformis] |
JMSF009E02 | Sequence | 425 | 007284 (4) | ref|XP_009603383.1| | 2e-47 | PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana tomentosiformis] | 752 | 001294 (4) | ref|XP_009603383.1| | 2e-112 | PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMFF035B02+ CTTTGACTTTGTCGAGCAAT
____________________________________________________________
consensus CTTTGACTTTGTCGAGCAAT
. : . : . : . : . : . :
JMFF035B02+ TGGGGAACGGTGACGATGAGCTTTGGGCTACAATCCTTGATTTGTTTGGAAAGCTCTGGA
____________________________________________________________
consensus TGGGGAACGGTGACGATGAGCTTTGGGCTACAATCCTTGATTTGTTTGGAAAGCTCTGGA
. : . : . : . : . : . :
JMFF035B02+ ACTGTATACATTGGATTCACGGTCGTGGCAATGGCCCCGGCGGCGATGGCGCCCAAGAAG
JMSF009E02+ CGGCGGCGATGGCGCCCAAGAAG
____________________________________________________________
consensus ACTGTATACATTGGATTCACGGTCGTGGCAATGGCCCCGGCGGCGATGGCGCCCAAGAAG
. : . : . : . : . : . :
JMFF035B02+ CAGAGTGGGAAGTCGATGGAGTTGGGAGAGAAGATAAGAACGACATCGTTTTTCCTAACA
JMSF009E02+ CAGAGTGGGAAGTCGATGGAGTTGGGAGAGAAGATAAGAACGACATCGTTTTTCCTAACA
____________________________________________________________
consensus CAGAGTGGGAAGTCGATGGAGTTGGGAGAGAAGATAAGAACGACATCGTTTTTCCTAACA
. : . : . : . : . : . :
JMFF035B02+ CCCAGTTGATGCTTCAAGCCATGAGCGACTCTTGAGACCTGGGATTTCAACTGGGAGAAA
JMSF009E02+ CCCAGTTGATGCTTCAAGCCATGAGCGACTCTTGAGACCTGGGATTTCAACTGGGAGAAA
JMSF001K20+ AACTGGGAGAAA
JMFF004E14+ GACTCTTGAGACCTGGGATTTCAACTGGGAGAAA
____________________________________________________________
consensus CCCAGTTGATGCTTCAAGCCATGAGCGACTCTTGAGACCTGGGATTTCAACTGGGAGAAA
. : . : . : . : . : . :
JMFF035B02+ GTCAATGTCCGGCCGGTGTCGGCGTCATGGATGGCCGGTTGGTCCGGGTACTGAGAAATG
JMSF009E02+ GTCAATGTCCGGCCGGTGTCGGCGTCATGGATGGCCGGTTGGTCCGGGTACTGAGAAATG
JMSF001K20+ GTCAATGTCCGGCCGGTGTCGGCGTCATGGATGGCCGGTTGGTCCGGGTACTGAGAAATG
JMFF004E14+ GTCAATGTCCGGCCGGTGTCGGCGTCATGGATGGCCGGTTGGTCCGGGTACTGAGAAATG
____________________________________________________________
consensus GTCAATGTCCGGCCGGTGTCGGCGTCATGGATGGCCGGTTGGTCCGGGTACTGAGAAATG
. : . : . : . : . : . :
JMFF035B02+ TTCCGGAAGAGGAAGGAGACCATTGAGAGGTTGGGGTCCCGCGGGAGGACAATCGGCGGC
JMSF009E02+ TTCCGGAAGAGGAAGGAGACCATTGAGAGGTTGGGGTCCCGCGGGAGGACAATCGGCGGC
JMSF001K20+ TTCCGGAAGAGGAAGGAGACCATTGAGAGGTTGGGGTCCCGCGGGAGGACAATCGGCGGC
JMFF004E14+ TTCCGGAAGAGGAAGGAGACCATTGAGAGGTTGGGGTCCCGCGGGAGGACAATCGGCGGC
____________________________________________________________
consensus TTCCGGAAGAGGAAGGAGACCATTGAGAGGTTGGGGTCCCGCGGGAGGACAATCGGCGGC
. : . : . : . : . : . :
JMFF035B02+ CGGAGAGATCTGTAGATTCCATCGCGGCCGTACCCAGACTTTTCCATAGCTAAGATTCGG
JMSF009E02+ CGGAGAGATCTGTAGATTCCATCGCGGCCGTACCCAGACTTTTCCATAGCTAAGATTCGG
JMSF001K20+ CGGAGAGATCTGTAGATTCCATCGCGGCCGTACCCAGACTTTTCCATAGCTAAGATTCGG
JMFF004E14+ CGGAGAGATCTGTAGATTCCATCGCGGCCGTACCCAGACTTTTCCATAGCTAAGATTCGG
____________________________________________________________
consensus CGGAGAGATCTGTAGATTCCATCGCGGCCGTACCCAGACTTTTCCATAGCTAAGATTCGG
. : . : . : . : . : . :
JMFF035B02+ AGAAAATGGAAATTTGTGAAATTCGCCGGAGAGAGCAAGTACTTATCGGATTGCTGACGC
JMSF009E02+ AGAAAATGGAAATTTGTGAAATTCGCCGGAGAGAGCAAGTACTTATCGGATTGCTGACGC
JMSF001K20+ AGAAAATGGAAATTTGTGAAATTCGCCGGAGAGAGCAAGTACTTATCGGATTGCTGACGC
JMFF004E14+ AGAAAATGGAAATTTGTGAAATTCGCCGGAGAGAGCAAGTACTTATCGGATTGCTGACGC
____________________________________________________________
consensus AGAAAATGGAAATTTGTGAAATTCGCCGGAGAGAGCAAGTACTTATCGGATTGCTGACGC
. : . : . : . : . : . :
JMFF035B02+ AGAATGACGAGAGCGTTTCCGAGAGTGTGGGCAAAACAC
JMSF009E02+ AGAATGACGAGAGCGTTTCCGAGAGTGTGGGCAAAACAC
JMSF001K20+ AGAATGACGAGAGCGTTTCCGAGAGTGTGGGCAAAACAC
JMFF004E14+ AGAATGACGAGAGCGTTTCCGAGAGTGTGGGCAAAACACGCAAATACATAAACAGCACTC
____________________________________________________________
consensus AGAATGACGAGAGCGTTTCCGAGAGTGTGGGCAAAACACGCAAATACATAAACAGCACTC