| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP008F02 | Sequence | 524 | 007268 (5) | gb|KCW61801.1| | 4e-20 | hypothetical protein EUGRSUZ_H044981, partial [Eucalyptus grandis] | |||||
| JMCP009H05 | Sequence | 533 | 007268 (5) | gb|KCW61801.1| | 5e-20 | hypothetical protein EUGRSUZ_H044981, partial [Eucalyptus grandis] | |||||
| JMCP017B11 | Sequence | 498 | 007268 (5) | ref|XP_011023610.1| | 96.7 | PREDICTED: probable linoleate 9S-lipoxygenase 5 [Populus euphratica] | |||||
| JMCP017H03 | Sequence | 526 | 007268 (5) | gb|KCW61801.1| | 4e-20 | hypothetical protein EUGRSUZ_H044981, partial [Eucalyptus grandis] | |||||
| JMCP019D11 | Sequence | 356 | 007268 (5) | ref|XP_006344623.1| | 3e-14 | PREDICTED: probable linoleate 9S-lipoxygenase 5-like [Solanum tuberosum] | |||||
This contig is upended
. : . : . : . : . : . :
JMCP008F02+ GTTGCCGTAAAaCcTAATGaagtaCcGtaaGGATGTTGATTTTC
rJMCP017H03+ GTTGCCGTAAATCGTAATGTTCATCGGATTGGATGTTGATTTTC
JMCP017B11+ GATTGGATGTTGATTTTC
JMCP009H05+ GTTTTTGGAGTTGCCGTAAATCGTAATGTTCATCGGATTGGATGTTGATTTTC
____________________________________________________________
consensus GTTTTTGGAGTTGCCGTAAATCGTAATGTTCATCGGATTGGATGTTGATTTTC
. : . : . : . : . : . :
JMCP008F02+ TTCATATTAGGTCAAATTTTGAATGGTATGCCTTTGTGATTAGCCTTAAAATTTTCCATT
rJMCP017H03+ TTCATATTAGGTCAAATTTTGAATGGTATGCCTTTGTGATTAGCCTTAAAATTTTCCATT
JMCP017B11+ TTCATATTAGGTCAAATTTTGAATGGTATGCCTTTGTGATTAGCCTTAAAATTTTCCATT
JMCP009H05+ TTCATATTAGGTCAAATTTTGAATGGTATGCCTTTGTGATTAGCCTTAAAATTTTCCATT
____________________________________________________________
consensus TTCATATTAGGTCAAATTTTGAATGGTATGCCTTTGTGATTAGCCTTAAAATTTTCCATT
. : . : . : . : . : . :
JMCP008F02+ TATTTTAATAAATAGAAACTACCGAGCATTTATAGAACCTTCAAAATTAATTGATATCTG
rJMCP017H03+ TATTTTAATAAATAGAAACTACCGAGCATTTATAGAACCTTCAAAATTAATTGATATCTG
JMCP017B11+ TATTTTAATAAATAGAAACTACCGAGCATTTATAGAACCTTCAAAATTAATTGATATCTG
JMCP009H05+ TATTTTAATAAATAGAAACTACCGAGCATTTATAGAACCTTCAAAATTAATTGATATCTG
____________________________________________________________
consensus TATTTTAATAAATAGAAACTACCGAGCATTTATAGAACCTTCAAAATTAATTGATATCTG
. : . : . : . : . : . :
JMCP008F02+ AGGAGCATGCATATGTGATTCGTTGTTCGAATTGTTCAATTTGGATGCCAACATATATCT
rJMCP017H03+ AGGAGCATGCATATGTGATTCGTTGTTCGAATTGTTCAATTTGGATGCCAATATATATCT
JMCP017B11+ AGGAGCATGCATATGTGATTCGTTGTTCGAATTGTTCAATTTGGATGCCAATATATATCT
JMCP009H05+ AGGAGCATGCATATGTGATTCGTTGTTCGAATTGTTCAATTTGGATGCCAATATATATCT
rJMCP019D11+ AGCATGCATATGTGtaaCcaacaagGttaacaagAAaaacctacggttTtTATATCT
____________________________________________________________
consensus AGGAGCATGCATATGTGATTCGTTGTTCGAATTGTTCAATTTGGATGCCAATATATATCT
. : . : . : . : . : . :
JMCP008F02+ GTACTTTTTTCTAGTTTTCTCTTTGAATATCATATACTCCGTATTCAAATTTGTGTTGAA
rJMCP017H03+ GTACTTTTTTTTAGTTTTCTCTTTGAATATCATATACTCCGTATTCAAATTTGTGTTGAA
JMCP017B11+ GTACTTTTTTCTAGTTTTCTCTTTGAATATCATATACTCCGTATTCAAATTTGTGTTGAA
JMCP009H05+ GTACTTTTTTCTAGTTTTCTCTTTGATTATCATATACTCCGTATTCAAATTTGTGTTGAA
rJMCP019D11+ GTACTTTTTTCaAcTTTTCTCTTTGAATATCAatatgaggcataagAAATTTcacaacAA
____________________________________________________________
consensus GTACTTTTTTCTAGTTTTCTCTTTGAATATCATATACTCCGTATTCAAATTTGTGTTGAA
. : . : . : . : . : . :
JMCP008F02+ GTGTGTGTTTAATGATTTCATTCAGTTTGATTAGGGTTGATCTTATTTGACTTCCTGTAT
rJMCP017H03+ GTGTGTGTTTAATGATTTCATTCAGTTTGATTAGGGTTGATCTTATTTGACTTCCTGTAT
JMCP017B11+ GTGTGTGTTTAATGATTTCATTCAGTTTGATTAGGGTTGATCTTATTTGACTTCCTGTAT
JMCP009H05+ GTGTGTGTTTAATGATTTCATTCAGTTTGATTAGGGTTGATCTTATTTGACTTCCTGTAT
rJMCP019D11+ GTGTGTGTTTAATGATTTCATTCAGTTTGATTAGGGTTGATCTTATTTGACTTCCTGTAT
____________________________________________________________
consensus GTGTGTGTTTAATGATTTCATTCAGTTTGATTAGGGTTGATCTTATTTGACTTCCTGTAT
. : . : . : . : . : . :
JMCP008F02+ TAATTATTTAATTCTTGTAGGCATATCTTCCAAGCCAAACACCTGCCCCGTTGAAGAAAT
rJMCP017H03+ TAATTATTTAATTCTCGTAGGCATATCTTCCAAGCCAAACACCTGCCCCGTTGAAGAAAT
JMCP017B11+ TAATTATTTAATTCTTGTAGGCATATCTTCCAAGCCAAACACCTGCCCCGTTGAAGAAAT
JMCP009H05+ TAATTATTTAATTCTTGTAGGCATATCTTCCAAGCCAAACACCTGCCCCGTTGAAGAAAT
rJMCP019D11+ TAATTATTTAATTCTTGTAGGCAatagaaggAAGCCAAACACCTGCCCCGTTGAAGAAAT
____________________________________________________________
consensus TAATTATTTAATTCTTGTAGGCATATCTTCCAAGCCAAACACCTGCCCCGTTGAAGAAAT
. : . : . : . : . : . :
JMCP008F02+ ATCGAGATGAAGAATTAGTGCACTTGAGAGGAACAGGAACTGGCGAGCTTAAGGAATGGG
rJMCP017H03+ ATCGAGATGAAGAATTAGTGCACTTGAGAGGAACAGGAACTGGCGAGCTTAAGGAATGGG
JMCP017B11+ ATCGAGATAAAGAATTAGTGCACTTGAGAGGAACAGGAACTGGCGAGCTTAAGGAATGGG
JMCP009H05+ ATCGAGATGAAGAATTAGTGCACTTGAGAGGAACAGGAACTGGCGAGCTTAAGGAATGGG
rJMCP019D11+ ATCGAGATGAAGAATTAGTGCACTTGAGAGGAACAGGAACT-GCGAGCTTAAGGAATGGG
____________________________________________________________
consensus ATCGAGATGAAGAATTAGTGCACTTGAGAGGAACAGGAACTGGCGAGCTTAAGGAATGGG
. : . : . : . : . : . :
JMCP008F02+ ACAGGGTGTATGACTATGCCTACTACAATGACTTGGGTGATCCAGACAAAGGTGCAGAAT
rJMCP017H03+ ACAGGGTGTATGACTATGCCTACTACAATGACTTGGGTGATCCAGACAAAGGTGCAGAAT
JMCP017B11+ ACAGGGTGTATGACTATGCCTACTACAATGACTTGGGTGATCCAGACAAAGGTGCAGAAT
JMCP009H05+ ACAGGGTGTATGACTATGCCTACTAgAATGACTTGGGTGATCCAGACAAAGGTGCAGAAT
rJMCP019D11+ ACAGGGTGTATGACTATGCCTACTACAATGACTTGGGTGATCCAGACAAAGGTGCAGAAT
____________________________________________________________
consensus ACAGGGTGTATGACTATGCCTACTACAATGACTTGGGTGATCCAGACAAAGGTGCAGAAT