Contig 007263:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001E10Sequence535007263 (9)
JMCP004E07Sequence607007263 (9)
JMCP004H10Sequence605007263 (9)
JMCP006A06Sequence599007263 (9)
JMCP006B05Sequence606007263 (9)
JMCP007B12Sequence570007263 (9)
JMCP009F02Sequence328007263 (9)
JMCP009H09Sequence608007263 (9)
JMCP013A12Sequence537007263 (9)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMCP013A12+ TTAAAAGGTTCtGAATTagccaag
rJMCP004H10+ AAGGTTCAGAATTTCGGTTC
rJMCP006B05+ AAAGGTTCAGAATTTCGGTTC
rJMCP004E07+ AAAGGTTCAGAATTTCGGTTC
rJMCP009F02+ AGGTTCAGAATTagcGTTC
rJMCP009H09+ AAAGGTTCAGAATTTCGGTTC
                      ____________________________________________________________
consensus TTAAAAGGTTCAGAATTTCGGTTC
 
. : . : . : . : . : . :
rJMCP013A12+ aacATTGTTTAAGgAcgaCATGCAATTCAATATTGTGTAtgTCTTTTGagcATGTGGGTT
rJMCP004H10+ TTGATTGTTTAAGCAGCTCATGCAATTCAATATTGTGTAACTCTTTTGTCGATGTGGGTT
rJMCP006B05+ TTGATTGTTTAAGCAGCTCATGgAATTCAATATTGTGTAACTCTTTTGTCGATGTGGGTT
rJMCP007B12+ AAGCAGCTCATGCAATTCAATATTGTGTAACTCaaaacagGATGTGGGTT
rJMCP004E07+ TTGATTGTTTAAGCAGCTCATGCAATTCAATATTGTGTAACTCTTTTGTCGATGTGGGTT
rJMCP001E10+ GATGTGGGTT
rJMCP009F02+ aacATTGTTTAtGCAcgaCtaGCAATTCAATATTcacTAACTCTTaTGagcATGTGGGTT
rJMCP009H09+ TTGATTGTTTAAGCAGCTCATGgAATTCAATATTGTGTAACTCTTTTGTCGATGTGGGTT
rJMCP006A06+ TTGATTGTTTAAGgtcgTCATcgttaaCAATATTGTGattgagaaTTGagGATGTGGGTT
                      ____________________________________________________________
consensus TTGATTGTTTAAGCAGCTCATGCAATTCAATATTGTGTAACTCTTTTGTCGATGTGGGTT
 
. : . : . : . : . : . :
rJMCP013A12+ GAcgactGCTGGAGATagtAGAaacacaagactGCATTACaGTAATGGATCTGAAGTTCT
rJMCP004H10+ GAGCTGAGCTGGAGATTCAAGATTGTGTTCTGAGCATTACTGTAATGGAagTGAAGTTCT
rJMCP006B05+ GAGCTGAGCTGGAGATTCAAGATTGTGTTCTGAGCATTACTGTAATGGAagTGAAGTTCT
rJMCP007B12+ GAGCTGAGCTGGAGATTCAAGATTGTGTTCTGAGCATTACTGTAATGGATCTGAAGTTCT
rJMCP004E07+ GAGCTGAGCTGGAGATTCAAGATTGTGTTCTGAGCATTACTGTAATGGATCTGAAGTTCT
rJMCP001E10+ GAGCTGAGCTGGAGATTCAAGATTGTGTTCTGAGCATTACTGTAATGGATCTGAAGTTCT
rJMCP009F02+ GAcgaGAGCTGGAGATTCAAGATTGTGTagaGAGCATTACTGTAtacGAagacAtGTTCa
rJMCP009H09+ GAGCTGAGCTGGAGATTCAAGATTGTGTagTGAGCATTACTGTAATGctagacAAGTTCT
rJMCP006A06+ GAcgTGAcCTGGAGATTCAAGATTGTGTagTGtGCATTACTGTAtacctagacAAGTagT
                      ____________________________________________________________
consensus GAGCTGAGCTGGAGATTCAAGATTGTGTTCTGAGCATTACTGTAATGGATCTGAAGTTCT
 
. : . : . : . : . : . :
rJMCP013A12+ TGATGATTTGacgaaGAaggtgTcacTTCTTtgaAtagaGAGATGGTtgTGTTTGATATT
rJMCP004H10+ TGATGATTTGTGCTTGATCCACTGTGTTCTTACTAAagTGAGATGGTACTGTTTGATATT
rJMCP006B05+ TGATGATTTGTGCTTGATCCACTGTGTTCTTACTAAagTGAGATGGTACTGTTTGATATT
rJMCP007B12+ TGATGATTTGTGCTTGATCCACTGTGTTCTTACTAATCTGAGATGGTACTGTTTGATATT
rJMCP004E07+ TGATGATTTGTGCTTGATCCACTGTGTTCTTACTAATCTGAGATGGTACTGTTTGATATT
rJMCP001E10+ TGATGATTTGTGCTTGATCCACTGTGTTCTTACTAATCTGAGATGGTACTGTTTGATATT
rJMCP009F02+ TGATGATTTGTcgaaGAaCCACTGTGTagaatgattagactGATGGTtgaGaTTGATATa
rJMCP009H09+ TGATGATTTGTGCTTGATCCACTGTGTTCTTACattagaGAGATGGTACTGTTTGATATT
rJMCP006A06+ TGATGATTTGTGCTTGAagCACTGTGTagaTACattagacAGATGGTACTGTTTGATATT
                      ____________________________________________________________
consensus TGATGATTTGTGCTTGATCCACTGTGTTCTTACTAATCTGAGATGGTACTGTTTGATATT
 
. : . : . : . : . : . :
rJMCP013A12+ TGGATTTTTTTTagaAGTAGTaagactTAccAATTGGTGAaacccctattaCgacaATAG
rJMCP004H10+ TGGA-TTTTTTTTCTAGTAGTTagTGATAGGAATTGGTGATTGGGGATAATCCTGTATAG
rJMCP006B05+ TGGA-TTTTCTTTCTAGTAGTTagTGATAGGAATTGGTGATTGGGGATAATCCTGTATAG
rJMCP007B12+ TGGATTTTTTTTTCTAGTAGTTTCTGATAGGAATTGGTGATTGGGGATAATCCTGTATAG
rJMCP004E07+ TGGA-TTTTTTTTCTAGTAGTTTCTGATAGGAATTGGTGATTGGGGATAATCCTGTATAG
rJMCP001E10+ TGGA-TTTTTTTTCTAGTAGTTTCTGATAGGAATTGGTGATTGGGGATAATCCTGTATAG
rJMCP009F02+ acGA-TTTTTaaagatcatGaaagaGATAGGAATTGGTGAaacGGGATAATCgacatTtc
rJMCP009H09+ TGGA-TTTTTTTTCTAGTAGTTagTGATAGGAATTGGTGATTGGGGATAATCCTGTATAG
rJMCP006A06+ TGGA-TTTTTTTTCTAGTAGaaagacATAGGAtTTGGTGATTGGGGATAATCCTGTATAG
                      ____________________________________________________________
consensus TGGA-TTTTTTTTCTAGTAGTTTCTGATAGGAATTGGTGATTGGGGATAATCCTGTATAG
 
. : . : . : . : . : . :
rJMCP013A12+ GAATAGTTGTGctaTGGAATATAccaATTCAAATAATTTTATCTATGATTGGTACAGTGT
rJMCP004H10+ GAATAGTTGTGGATTGGAATATAGGTATTCAAATAATTTTATCTATGATTGGTACAGTGT
rJMCP006B05+ GAATAGTTGTGGATTGGAATATAGGTATTCAAATAATTTTATCTATGATTGGTACAGTGT
rJMCP007B12+ GAATAGTTGTGGATTGGAATATAGGTATTCAAATAATTTTATCTATGATTGGTACAGTGT
rJMCP004E07+ GAATAGTTGTGGATTGGAATATAGGTATTCAAATAATTTTATCTATGATTGGTACAGTGT
rJMCP001E10+ GAATAGTTGTGGATTGGAATATAGGTATTCAAATAATTTTATCTATGATTGGTACAGTGT
rJMCP009F02+ cttTAGTTGTGGATTGGAATATAGGTATTCAAATAATTTTAagaAactaTGGTACAGTGT
rJMCP009H09+ GAATAGTTGTGGATTGGAATATAGGTATTCAAATAATTTTATCTATGATTGGTACAGTGT
rJMCP006A06+ GAATAGTTGTGGATTGGAtaATAGGTATTCAAATAAaaTTATCTATGATTGGTAgtcTGT
                      ____________________________________________________________
consensus GAATAGTTGTGGATTGGAATATAGGTATTCAAATAATTTTATCTATGATTGGTACAGTGT
 
. : . : . : . : . : . :
rJMCP013A12+ gtTAGGAGAAAGTGCTGaAgCTTTTTTAaTccgTTTTACaTGttaTTGTTGTatAGATAT
rJMCP004H10+ CATAGGAGAAAGTGCTGTACCTTTTTTATTGGCTTTTACTTGAATTTGTTGTTAAGATAT
rJMCP006B05+ CATAGGAGAAAGTGCTGTACCTTTTTTATTGGCTTTTACTTGAATTTGTTGTTAAGATAT
rJMCP007B12+ CATAGGAGAAAGTGCTGTACCTTTTTTATTGGCTTTTACTTGAATTTGTTGTTAAGATAT
rJMCP004E07+ CATAGGAGAAAGTGCTGTACCTTTTTTATTGGCTTTTACTTGAATTTGTTGTTAAGATAT
rJMCP001E10+ CATAGGAGAAAGTGCTGTACCTTTTTTATTGGCTTTTACTTGAATTTGTTGTTAAGATAT
rJMCP009F02+ CATAGGAGAA
rJMCP009H09+ CATAGGAGAAtcTGCTGTACCTTTTTTATTGGCTTTTACTTGAATTTGTTGTTAAGATAT
rJMCP006A06+ CATAGGAGtttcTGCTGTACCTTTTTTATTGGCTTTTACTTcAATTTGTTGTTAAGATAT
                      ____________________________________________________________
consensus CATAGGAGAAAGTGCTGTACCTTTTTTATTGGCTTTTACTTGAATTTGTTGTTAAGATAT
 
. : . : . : . : . : . :
rJMCP013A12+ ATGATTGAAgaagCATAGGTAAacaTTTGTAATTATTGTGGCATGTATGCATTTCTTaga
rJMCP004H10+ ATGATTGAACTTCCATAGGTAATGTTTTGTAATTATTGTGGCtaGTATGCATTTCTTTCT
rJMCP006B05+ ATGATTGAACTTCCATAGGTAATGTTTTGTAATTATTGTGGCtaGTATGCATTTCTTTCT
rJMCP007B12+ ATGATTGAACTTCCATAGGTAATGTTTTGTAATTATTGTGGCATGTATGCATTTCTTTCT
rJMCP004E07+ ATGATTGAACTTCCATAGGTAATGTTTTGTAATTATTGTGGCATGTATGCATTTCTTTCT
rJMCP001E10+ ATGATTGAACTTCCATAGGTAATGTTTTGTAATTATTGTGGCATGTATGCATTTCTTTCT
rJMCP009H09+ ATGATTGAACTTCCATAGGTAACGTTTTGTAATTATTGTGGgtaGTATGCATTTCTTTCT
rJMCP006A06+ ATGATTGAtgTTCCATAGGattTGTTTTGTAtTTATTGTGcgtacaATGgtaTTCTTTCT
                      ____________________________________________________________
consensus ATGATTGAACTTCCATAGGTAATGTTTTGTAATTATTGTGGCATGTATGCATTTCTTTCT
 
. : . : . : . : . : . :
rJMCP013A12+ AacgagaTagtctcggggaaaAGGATTCTGaATTGGTTCATGTTAgCggaAAAagTAGCT
rJMCP004H10+ ATGCTCTTTCAGAGGGCCTTTAGGATTCTGTATTGGTTCATGTTACCCCTAAATCTAGCT
rJMCP006B05+ ATGCTCTTTCAGAGGGCCTTTAGGATTCTGTATTGGTTCATGTTACCCCTAAATCTAGCT
rJMCP007B12+ ATGCTCTTTCAGAGGGCCTTTAGGATTCTGTATTGGTTCATGTTACCCCTAAATCTAGCT
rJMCP004E07+ ATGCTCTTTCAGAGGGCCTTTAGGATTCTGTATTGGTTCATGTTACCCCTAAATCTAGCT
rJMCP001E10+ ATGCTCTTTCAGAGGGCCTTTAGGATTCTGTATTGGTTCATGTTACCCCTAAATCTAGCT
rJMCP009H09+ ATGCTCTTTCAGAGGGCCTTTAGGATTCTGTATTGGTTCATGTTACCCCTAAATCTAGCT
rJMCP006A06+ ATGgaCTTTCAGAGGGCCTTTAGGATTCTGTATTGGTTCATGTTACCCCaAAATCTAGCT
                      ____________________________________________________________
consensus ATGCTCTTTCAGAGGGCCTTTAGGATTCTGTATTGGTTCATGTTACCCCTAAATCTAGCT
 
. : . : . : . : . : . :
rJMCP013A12+ TATTCATTACTGATGGTGGTTGGGAGTAAGGTT
rJMCP004H10+ TATTCATTACTGATGGTGGTTGGGAGTAAGGTTTGTTGATTGGACATAATTTTTGAATCg
rJMCP006B05+ TATTCATTACTGATGGTGGTTGGGAGTAAGGTTTGTTGATTGGACATAATTTTTGAATCg
rJMCP007B12+ TATTCATTACTGATGGTGGTTGGGAGTAAGGTTTGTTGATTGGACATAATTTTTGAATCC
rJMCP004E07+ TATTCATTACTGATGGTGGTTGGGAGTAAGGTTTGTTGATTGGACATAATTTTTGAATCg
rJMCP001E10+ TATTCATTACTGATGGTGGTTGGGAGTAAGGTTTGTTGATTGGACATAATTTTTGAATCC
rJMCP009H09+ TATTCATTACTGATGGTGGTTGGGAGTAAGGTTTGTTGATTGGACATAATTTTTGAAagg
rJMCP006A06+ TATTCATTACTGATGGTGGTTGGGAGTAAGGTTTGTTGATTGGAgtaAATTTTTGAAagg
                      ____________________________________________________________
consensus TATTCATTACTGATGGTGGTTGGGAGTAAGGTTTGTTGATTGGACATAATTTTTGAATCC
 
. : . : . : . : . : . :
rJMCP004H10+ -ttTTGATTGCCCACAAAAGGCGAAATTCCCTAGCTCCGGCCCCGGC
rJMCP006B05+ -ttTTGATTGCCCACAAAAGGCGAAATTCCCTAGCTCCGGCCCCGGC
rJMCP007B12+ -AATTGATTGCCCACAAAAGGCGAAATTCCCTAGCTCCGGC
rJMCP004E07+ -AATTGATTGCCCACAAAAGGCGAAATTCCCTAGCTCCGGCCCCGGC
rJMCP001E10+ -AATTGATTGCCCACAAAAGGCGAAATTCCCTAGCTCCGGCCCCGGC
rJMCP009H09+ -ttaaGATTGCCgtgttAAGGCGAAATTCCCTAGCTCCGGCCCCGGC
rJMCP006A06+ cttaTGATTGCCgtgttttGGCctttTTCCCatGgagCGGCCCCGGCCCCGGCCCCGGCC
                      ____________________________________________________________
consensus -AATTGATTGCCCACAAAAGGCGAAATTCCCTAGCTCCGGCCCCGGCCCCGGCCCCGGCC