Contig 007258:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP003F11Sequence600007258 (2)ref|XP_008782697.1|2e-21PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840
JMCP020B08Sequence435007258 (2)ref|XP_007017105.1|1e-15Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao] g

Alignment

This contig is upended


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JMCP003F11+           AATAAGTAGCCATGTAACTCGAGCAAGCAACTTATTGATGTCATgtaGATATGTTTTTGT
                      ____________________________________________________________
consensus             AATAAGTAGCCATGTAACTCGAGCAAGCAACTTATTGATGTCATCATGATATGTTTTTGT
 
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JMCP003F11+           aacGAGAACTGAGAGTTCACATATGCTACGAAGTCACAAAAATATGGCGTTCTTGCAGGG
                      ____________________________________________________________
consensus             TTGGAGAACTGAGAGTTCACATATGCTACGAAGTCACAAAAATATGGCGTTCTTGCAGGG
 
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JMCP020B08+                                                        GAGCGATGTTTACAc
JMCP003F11+           ATATCTCGACCCGGAGTATTTCCTAACCCACAAACTCACGGACAAGAGCGATGTTTACAG
                      ____________________________________________________________
consensus             ATATCTCGACCCGGAGTATTTCCTAACCCACAAACTCACGGACAAGAGCGATGTTTACAG
 
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JMCP020B08+           ggaacGTGTAGataagCTCGAGTTGaaGACTGGtATGCGCggatTTTCTCACGGCAAAAA
JMCP003F11+           CCTTGGTGTAGTATTCCTCGAGTTGTTGACTGGAATGCACCCTATTTCTCACGGCAAAAA
                      ____________________________________________________________
consensus             CCTTGGTGTAGTATTCCTCGAGTTGTTGACTGGAATGCGCCCTATTTCTCACGGCAAAAA
 
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JMCP020B08+           TATTGTTAGGGAGGTAAGCTCTTTCCCACTTCATTGTACTGTTGAGTGTTGAACATAACA
JMCP003F11+           TATTGTTAGGGAGGTAAGCTCTTTCCCACTTCATTGTACTGTTGAGTGTTGAACATAACA
                      ____________________________________________________________
consensus             TATTGTTAGGGAGGTAAGCTCTTTCCCACTTCATTGTACTGTTGAGTGTTGAACATAACA
 
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JMCP020B08+           TAATATGACAAGTTGAGATAGTACACATCCTCCACAATCCTATCTCGAGCCTGGGTGTGG
JMCP003F11+           TAATATGACAAGTTGAGATAGTACACATCCTCCACAATCCTATCTCGAGCCTGGGTGTGG
                      ____________________________________________________________
consensus             TAATATGACAAGTTGAGATAGTACACATCCTCCACAATCCTATCTCGAGCCTGGGTGTGG
 
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JMCP020B08+           GGCCCTTGGAGCGAGGGATTTCGCCTTTTGTGGGCAAGATAGTACACATCTTTTAATTTA
JMCP003F11+           GGCCCTTGGAGCGAGGGATTTCGCCTTTTGTGGGCAAGATAGTACACATCTTTTAATTTA
                      ____________________________________________________________
consensus             GGCCCTTGGAGCGAGGGATTTCGCCTTTTGTGGGCAAGATAGTACACATCTTTTAATTTA
 
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JMCP020B08+           GTTGAGAAATAGGCCATAAATTCACACAAGACTTGTGGTTTGCATTGCATCAGGTAAACG
JMCP003F11+           GTTGAGAAATAGGCCATAAATTCACACAAGACTTcTGGTTTGCATTGCATCAGGTAAACG
                      ____________________________________________________________
consensus             GTTGAGAAATAGGCCATAAATTCACACAAGACTTGTGGTTTGCATTGCATCAGGTAAACG
 
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JMCP020B08+           TTGCATGTTCTTCGGGCATGATATTCTCTGTGATTGATGAGCGGATGGGATCATATCCTT
JMCP003F11+           TTGCATATTCTTCGGGCATGATATTCTCTGTGATTGATGAGCGGATGGGATCATATCCTT
                      ____________________________________________________________
consensus             TTGCATGTTCTTCGGGCATGATATTCTCTGTGATTGATGAGCGGATGGGATCATATCCTT
 
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JMCP020B08+           CTGAATGCGTGGAGAAGTTCATAACACTGGCTCTCAAATGCTGCCAAGACGACACAGATT
JMCP003F11+           CTGAATGCGTAGAGAAGTTCATAACACTGGCTCTCAAATGCTGCCAAGACGACACAGATT
                      ____________________________________________________________
consensus             CTGAATGCGTGGAGAAGTTCATAACACTGGCTCTCAAATGCTGCCAAGACGACACAGATT