Contig 007254:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022K21Sequence671010896 (7)ref|XP_004232623.1|9e-75PREDICTED: uncharacterized protein LOC101252349 isoform X2 [Solanum lycopersicu731007254 (7)ref|XP_004232623.1|8e-40PREDICTED: uncharacterized protein LOC101252349 isoform X2 [Solanum lycopersicu
JMSF028L23Sequence679010896 (7)ref|XP_010316519.1|4e-84PREDICTED: uncharacterized protein LOC101252349 isoform X1 [Solanum lycopersicu724007254 (7)ref|XP_009617275.1|5e-58PREDICTED: uncharacterized protein LOC104109628 isoform X2 [Nicotiana tomentosi
JMSF038G15Sequence682010896 (7)ref|XP_004232623.1|6e-84PREDICTED: uncharacterized protein LOC101252349 isoform X2 [Solanum lycopersicu889007254 (7)ref|XP_002275523.2|1e-74PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth
JMSF042P04Sequence698010896 (7)ref|XP_004232623.1|4e-88PREDICTED: uncharacterized protein LOC101252349 isoform X2 [Solanum lycopersicu701007254 (7)ref|XP_009617275.1|1e-52PREDICTED: uncharacterized protein LOC104109628 isoform X2 [Nicotiana tomentosi
JMSF047B23Sequence641010896 (7)ref|XP_010316519.1|1e-50PREDICTED: uncharacterized protein LOC101252349 isoform X1 [Solanum lycopersicu769007254 (7)ref|XP_009617275.1|6e-48PREDICTED: uncharacterized protein LOC104109628 isoform X2 [Nicotiana tomentosi
JMSF049K03Sequence624010896 (7)ref|XP_004232623.1|2e-55PREDICTED: uncharacterized protein LOC101252349 isoform X2 [Solanum lycopersicu783007254 (7)ref|XP_002275523.2|3e-83PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth
JMSF052B12Sequence718010896 (7)ref|XP_010316519.1|2e-81PREDICTED: uncharacterized protein LOC101252349 isoform X1 [Solanum lycopersicu843007254 (7)ref|XP_002275523.2|1e-71PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth

Alignment

This contig is upended


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rJMSF038G15+                              CTGCTAGTTCATGATTGTCACAATATCCAGAAGCTACTGC
                      ____________________________________________________________
consensus                                 CTGCTAGTTCATGATTGTCACAATATCCAGAAGCTACTGC
 
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rJMSF038G15+          CATGCAGATTGCAGAAACCTTACCAGGATGTTATTGATGGTTTATTGCTCGATGATATTT
                      ____________________________________________________________
consensus             CATGCAGATTGCAGAAACCTTACCAGGATGTTATTGATGGTTTATTGCTCGATGATATTT
 
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rJMSF038G15+          CTTCACACTAACACGCTGATCTAATTTTCTTCGATAATTATTTCAGAATCCTTGGGATGT
rJMSF049K03+                                                       GAATCCTTGGGATGT
rJMSF052B12+                                                                GGATGT
                      ____________________________________________________________
consensus             CTTCACACTAACACGCTGATCTAATTTTCTTCGATAATTATTTCAGAATCCTTGGGATGT
 
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rJMSF038G15+          CATCCAGTTCTCTGGAAATGCACTAATTCATAGGGACACTTTCTTATCCGTTTTTAACAT
rJMSF049K03+          CATCCAGTTCTCTGGAAATGCACTAATTCATAGGGACACTTTCTTATCCGTTTTTAACAT
rJMSF052B12+          CATCCAGTTCTCTGGAAATGCACTAATTCATAGGGACACTTTCTTATCCGTTTTTAACAT
                      ____________________________________________________________
consensus             CATCCAGTTCTCTGGAAATGCACTAATTCATAGGGACACTTTCTTATCCGTTTTTAACAT
 
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rJMSF038G15+          ATCTGGCCTTCCAGAAGATTATTACCACAATAGTAAGCTATCAAA--CGAGGGAGATAGT
rJMSF049K03+          ATCTGGCCTTCCAGAAGATTATTACCACAATAGTAAGCTATCAAA--CGAGGGAGATAGT
rJMSF047B23+                CCTTCCAGAAGATTATTACCACAATAGTAAGCTATCCAANCGAGGGGAGATAGT
rJMSF028L23+              GGCCTTCCAGAAGATTATTACCACAATAGTAAGCTATCAAA--CGAGGGAGATAGT
rJMSF042P04+                                      AATAGTAAGCTATCAAA--CGAGGGAGATAGT
rJMSF052B12+          ATCTGGCCTTCCAGAAGATTATTACCACAATAGTAAGCTATCAAA--CGAGGGAGATAGT
                      ____________________________________________________________
consensus             ATCTGGCCTTCCAGAAGATTATTACCACAATAGTAAGCTATCAAA--CGAGGGAGATAGT
 
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rJMSF038G15+          TTTGTTGATGGAGCAGTTATAGCAGCAGCGAGAACATTGCCTACTTGGTCAGATAGAGAC
rJMSF049K03+          TTTGTTGATGGAGCAGTTATAGCAGCAGCGAGAACATTGCCTACTTGGTCAGATAGAGAC
rJMSF047B23+          TTTGTTGATGGAGCAGTTATAGCAGCAGCGAGAACATTGCCTACTTGGTCAGATAGAGAC
rJMSF028L23+          TTTGTTGATGGAGCAGTTATAGCAGCAGCGAGAACATTGCCTACTTGGTCAGATAGAGAC
rJMSF042P04+          TTTGTTGATGGAGCAGTTATAGCAGCAGCGAGAACATTGCCTACTTGGTCAGATAGAGAC
rJMSF022K21+                        AGTTATAGCAGCAGCGAGAACATTGCNTACTTGGTCAGATAGAGAC
rJMSF052B12+          TTTGTTGATGGAGCAGTTATAGCAGCAGCGAGAACATTGCCTACTTGGTCAGATAGAGAC
                      ____________________________________________________________
consensus             TTTGTTGATGGAGCAGTTATAGCAGCAGCGAGAACATTGCCTACTTGGTCAGATAGAGAC
 
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rJMSF038G15+          ATGCCCCCAATTCCTAGTCTCGAGAGGAAAGCTGTGAAGGAATTGCAAGAAGAATGCCTG
rJMSF049K03+          ATGCCCCCAATTCCTAGTCTCGAGAGGAAAGCTGTGAAGGAATTGCAAGAAGAATGCCTG
rJMSF047B23+          ATGCCCCCAATTCCTAGTCTCGAGAGGAAAGCTGTGAAGGAATTGCAAGAAGAATGCCTG
rJMSF028L23+          ATGCCCCCAATTCCTAGTCTCGAGAGGAAAGCTGTGAAGGAATTGCAAGAAGAATGCCTG
rJMSF042P04+          ATGCCCCCAATTCCTAGTCTCGAGAGGAAAGCTGTGAAGGAATTGCAAGAAGAATGCCTG
rJMSF022K21+          ATGCCCCCAATTCCTAGTCTCGAGAGGAAAGCTGTGAAGGAATTGCAAGAAGAATGCCTG
rJMSF052B12+          ATGCCCCCAATTCCTAGTCTCGAGAGGAAAGCTGTGAAGGAATTGCAAGAAGAATGCCTG
                      ____________________________________________________________
consensus             ATGCCCCCAATTCCTAGTCTCGAGAGGAAAGCTGTGAAGGAATTGCAAGAAGAATGCCTG
 
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rJMSF038G15+          CAGATGCTTGCAGAATTCCCGACAACTTCTAAGGAAGACCAGAAAATCCTAGATTCTTTG
rJMSF049K03+          CAGATGCTTGCAGAATTCCCGACAACTTCTAAGGAAGACCAGAAAATCCTAGATTCTTTG
rJMSF047B23+          CAGATGCTTGCAGAATTCCCGACAACTTCTAAGGAAGACCAGAAAATCCTAGATTCTTTG
rJMSF028L23+          CAGATGCTTGCAGAATTCCCGACAACTTCTAAGGAAGACCAGAAAATCCTAGATTCTTTG
rJMSF042P04+          CAGATGCTTGCAGAATTCCCGACAACTTCTAAGGAAGACCAGAAAATCCTAGATTCTTTG
rJMSF022K21+          CAGATGCTTGCAGAATTCCCGACAACTTCTAAGGAAGNCCAGAAAATCCTNGATTCTTTG
rJMSF052B12+          CAGATGCTTGCAGAATTCCCGACAACTTCTAAGGAAGACCAGAAAATCCTAGATTCTTTG
                      ____________________________________________________________
consensus             CAGATGCTTGCAGAATTCCCGACAACTTCTAAGGAAGACCAGAAAATCCTAGATTCTTTG
 
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rJMSF038G15+          TCTGAACCCAGGAGGACTCTTGAAACAGCAATAAAGTACAGATTGCACAAGAAGTTATTC
rJMSF049K03+          TCTGAACCCAGGAGGACTCTTGAAACAGCAATAAAGTACAGATTGCACAAGAAGTTATTC
rJMSF047B23+          TCTGAACCCAGGAGGACTCTTGAAACAGCAATAAAGTACAGATTGCACAAGAAGTTATTC
rJMSF028L23+          TCTGAACCCAGGAGGACTCTTGAAACAGCAATAAAGTACAGATTGCACAAGAAGTTATTC
rJMSF042P04+          TCTGAACCCAGGAGGACTCTTGAAACAGCAATAAAGTACAGATTGCACAAGAAGTTATTC
rJMSF022K21+          TCTGAACCCAGGAGGACTCTTGAAACAGCAATAAAGTACAGATTGCACAAGAAGTTANTC
rJMSF052B12+          TCTGAACCCAGGAGGACTCTTGAAACAGCAATAAAGTACAGATTGCACAAGAAGTTATTC
                      ____________________________________________________________
consensus             TCTGAACCCAGGAGGACTCTTGAAACAGCAATAAAGTACAGATTGCACAAGAAGTTATTC
 
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rJMSF038G15+          ATAGAGAAGGTGATGCAAACGCTAGAGATTTATCAAGACCGCATTCTGTTCTAGCAACGG
rJMSF049K03+          ATAGAGAAGGTGATGCAAACGCTAGAGATTTATCAAGACCGCATTCTGTTCTAGCAACGG
rJMSF047B23+          ATAGAGAAGGTGATGCAAACGCTAGAGATTTATCAAGACCGCATTCTGTTCTAGCAACGG
rJMSF028L23+          ATAGAGAAGGTGATGCAAACGCTAGAGATTTATCAAGACCGCATTCTGTTCTAGCAACGG
rJMSF042P04+          ATAGAGAAGGTGATGCAAACGCTAGAGATTTATCAAGACCGCATTCTGTTCTAGCAACGG
rJMSF022K21+          ATAGAGAAGGTGATGCAAACGCTAGAGATTTATCAAGACCGCATTCTGTTCTAGCAACGG
rJMSF052B12+          ATAGAGAAGGTGATGCAAACGCTAGAGATTTATCAAGACCGCATTCTGTTCTAGCAACGG
                      ____________________________________________________________
consensus             ATAGAGAAGGTGATGCAAACGCTAGAGATTTATCAAGACCGCATTCTGTTCTAGCAACGG
 
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rJMSF038G15+          TTAACAGCACAACATGAAGCTCTTCTTCAGACCTGTTCGGGGCAAAAACCAGGCGGTACG
rJMSF049K03+          TTAACAGCACAACATGAAGCTCTTCTTCAGACCTGTTCGGGGCAAAAACCAGGCGGTACG
rJMSF047B23+          TTAACAGCACAACATGAAGCTCTTCTTCAGACCTGTTCGGGGCAAAAACCAGGCGGTACG
rJMSF028L23+          TTAACAGCACAACATGAAGCTCTTCTTCAGACCTGTTCGGGGCAAAAACCAGGCGGTACG
rJMSF042P04+          TTAACAGCACAACATGAAGCTCTTCTTCAGACCTGTTCGGGGCAAAAACCAGGCGGTACG
rJMSF022K21+          TTAACAGCACAACATGAAGCTCTTCTTCAGACCTGTTCGGGGCAAAAACCAGGCGGTACG
rJMSF052B12+          TTAACAGCACAACATGAAGCTCTTCTTCAGACCTGTTCGGGGCAAAAACCAGGCGGTACG
                      ____________________________________________________________
consensus             TTAACAGCACAACATGAAGCTCTTCTTCAGACCTGTTCGGGGCAAAAACCAGGCGGTACG
 
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rJMSF038G15+          GTGTTTAAGGAAATGTCTTCTCTTGCCATTTGCTTGCACGATCCTCCGCGTCCATTTTGT
rJMSF049K03+          GTGTTTAAGGAAATGTCTTCTCTTGCCATTTGCTTGCACGATCCTCCGCGTCCATTTTGT
rJMSF047B23+          GTGTTTAAGGAAATGTCTTCTCTTGCCATTTGCTTGCACGATCCTCCGCGTCCATTTTGT
rJMSF028L23+          GTGTTTAAGGAAATGTCTTCTCTTGCCATTTGCTTGCACGATCCTCCGCGTCCATTTTGT
rJMSF042P04+          GTGTTTAAGGAAATGTCTTCTCTTGCCATTTGCTTGCACGATCCTCCGCGTCCATTTTGT
rJMSF022K21+          GTGTTTAAGGAAATGTCTTCTCTTGCCATTTGCTTGCACGATCCTCCGCGTCCATTTNGT
rJMSF052B12+          GTGTTTAAGGAAATGTCTTCTCTTGCCATTTGCTTGCACGATCCTCCGCGTCCATTTTGT
                      ____________________________________________________________
consensus             GTGTTTAAGGAAATGTCTTCTCTTGCCATTTGCTTGCACGATCCTCCGCGTCCATTTTGT
 
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rJMSF038G15+          AAAGATTCATCAGTCCTAAGAATCTGGGTGTGCAGGAGGAATCCTGAAGGTGTATTTCTT
rJMSF049K03+          AAAGATTCATCAGTCCTAAGAATCTGGGTGTGCAGGAGGAATCCTGAAGGTGTATTTCTT
rJMSF047B23+          AAAGATTCATCAGTCCTAAGAATCTGGGTGTGCAGGAGGAATCCTGAAGGTGTATTTCTT
rJMSF028L23+          AAAGATTCATCAGTCCTAAGAATCTGGGTGTGCAGGAGGAATCCTGAAGGTGTATTTCTT
rJMSF042P04+          AAAGATTCATCAGTCCTAAGAATCTGGGTGTGCAGGAGGAATCCTGAAGGTGTATTTCTT
rJMSF022K21+          AAAGATTCATCAGTCCTAAGAATCTGGGTGTGCAGGAGGAATCCTGAAGGTGTATTTCTT
rJMSF052B12+          AAAGATTCATCAGTCCTAAGAATCTGGGTGTGCAGGAGGAATCCTGAAGGTGTATTTCTT
                      ____________________________________________________________
consensus             AAAGATTCATCAGTCCTAAGAATCTGGGTGTGCAGGAGGAATCCTGAAGGTGTATTTCTT
 
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rJMSF038G15+          GGCCTTTGCTAATGAACTTAACAGAGGGAAGTGAAGGTAAATGAAGAAATAATGAAGGCC
rJMSF049K03+          GGCCTTTGCTAATGAACTTAACAGAGGGAAGTGAAGGCAAATGAAGAAATAATGAAGGCC
rJMSF047B23+          GGCCTTTGCTAATGAACTTAACAGAGGGAAGTGAAGGTAAATGAAGAAATAATGAAGGCC
rJMSF028L23+          GGCCTTTGCTAATGAACTTAACAGAGGGAAGTGAAGGTAAATGAAGAAATAATGAAGGCC
rJMSF042P04+          GGCCTTTGCTAATGAACTTAACAGAGGGAAGTGAAGGTAAATGAAGAAATAATGAAGGCC
rJMSF022K21+          GGCCTTTGCTAATGAACTTAACAGAGGGAAGTGAAGGTAANTGAAGAAATAATGAAGGCC
rJMSF052B12+          GGCCTTTGCTAATGAACTTAACAGAGGGAAGTGAAGGTAAATGAAGAAATAATGAAGGCC
                      ____________________________________________________________
consensus             GGCCTTTGCTAATGAACTTAACAGAGGGAAGTGAAGGTAAATGAAGAAATAATGAAGGCC
 
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rJMSF038G15+          TTCAAGTTTTGAATTGTTTCTTCAGTCACTTTGTTTCCATGGTGTATACAACAAAACCTC
rJMSF049K03+          TTCAAGTTTTGAATTGTTTCTTCAGTCACTTTGTTT-CATGGTGTATACAACAAAACCTC
rJMSF047B23+          TTCAAGTTTTGAATTGTTTCTTCAGTCACTTTGTTT-CATGGTGTATACAACAAAACCTC
rJMSF028L23+          TTCAAGTTTTGAATTGTTTCTTCAGTCACTTTGTTT-CATGGTGTATACAACAAAACCTC
rJMSF042P04+          TTCAAGTTTTGAATTGTTTCTTCAGTCACTTTGTTT-CATGGTGTATACAACAAAACCTC
rJMSF022K21+          TTCAAGTTTTGAATNGTTTCTTCAGTCACTTTGTTT-CATGGNGTATACAACAAAACCTC
rJMSF052B12+          TTCAAGTTTTGAATTGTTTCTTCAGTCACTTTGTTT-CATGGTGTATACAACAAAACCTC
                      ____________________________________________________________
consensus             TTCAAGTTTTGAATTGTTTCTTCAGTCACTTTGTTT-CATGGTGTATACAACAAAACCTC
 
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rJMSF038G15+          TGAATGGAAAT                                                 
rJMSF049K03+          TGAATGGAAATATGAATGAG                                        
rJMSF047B23+          TGAATGGAAATATGAATGAGTGGACTAACTTAGGCACTATGTGATAGGTTCTCTTCTCTA
rJMSF028L23+          TGAATGGAAATATGAATGAGTGGACTAACTTAGGCACTATGTGATAGGTTCTCTTCTCTA
rJMSF042P04+          TGAATGGAAATATGAATGAGTGGACTAACTTAGGCACTATGTGATAGGTTCTCTTCTCTA
rJMSF022K21+          TGAATGGAAATATGAATGAGTGGACTAACTTAGGCACTATGTGATAGGTTCTCTTCTCTA
rJMSF052B12+          TGAATGGAAATATGAATGAGTGGACTAACTTAGGCACTATGTGATAGGTTCTCTTCTCTA
                      ____________________________________________________________
consensus             TGAATGGAAATATGAATGAGTGGACTAACTTAGGCACTATGTGATAGGTTCTCTTCTCTA
 
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rJMSF047B23+          TTTTGTTCCCTTTTTTTATCCAAGTGAGCTTTACTGTTTTTTTGTACATTTT        
rJMSF028L23+          TTTTGT                                                      
rJMSF042P04+          TTTTGTTCCCTT                                                
rJMSF022K21+          TTTTGTTCCCTTTTTTTATCCAAGTGAGCTNTACTGNTTTTTTGTACATTTT        
rJMSF052B12+          TTTTGTTCCCTTTTTTTATCCAAGTGAGCTTTACTGTTTTTTTGTACATTTTTCAATTAA
                      ____________________________________________________________
consensus             TTTTGTTCCCTTTTTTTATCCAAGTGAGCTTTACTGTTTTTTTGTACATTTTTCAATTAA