Contig 007241:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015C05Sequence235007241 (2)
JMSF049P12Sequence644008084 (3)ref|XP_009602405.1|1e-19PREDICTED: uncharacterized protein At1g04910-like [Nicotiana tomentosiformis]728007241 (2)gb|AFK46646.1|2e-07unknown [Lotus japonicus]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049P12-                                                              ATAGCAGG
                      ____________________________________________________________
consensus                                                                 ATAGCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP015C05+                                                AGCACAGTATACATTTGACCTT
rJMSF049P12-          TCGCCTAGTTTGTCTACTAGAAATGGCATGTTGTATATAGCACAGTATACATTTGACCTT
                      ____________________________________________________________
consensus             TCGCCTAGTTTGTCTACTAGAAATGGCATGTTGTATATAGCACAGTATACATTTGACCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP015C05+          GTAAAATTTAACCTACCTTCAAATCAAGTCAGTCATTTAGGATAAGAAAACCAAAAATAA
rJMSF049P12-          GTAAAATTTAACCTACCTTCAAATCAAGTCAGTCATTTAGGATAAGAAAACCAAAAATAA
                      ____________________________________________________________
consensus             GTAAAATTTAACCTACCTTCAAATCAAGTCAGTCATTTAGGATAAGAAAACCAAAAATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP015C05+          AAATAAAAATAAAACAAAACAAAACGAGATTCTACTTGGTATTATACATGATATGCCATA
rJMSF049P12-          AAATAAAAATAAAACAAAACAAAACGAGATTCTACTTGGTATTATACATGATATGCCATA
                      ____________________________________________________________
consensus             AAATAAAAATAAAACAAAACAAAACGAGATTCTACTTGGTATTATACATGATATGCCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP015C05+          TACACCACCCCACTATTCTCCGACCCCCTTTAACTAAATATACCTTCCTCCCAGGCTTGT
rJMSF049P12-          TACACCACCCCACTATTCTCCGACCCCCTTTAACTAAATATACCTTCCTCCCAGGCTTGT
                      ____________________________________________________________
consensus             TACACCACCCCACTATTCTCCGACCCCCTTTAACTAAATATACCTTCCTCCCAGGCTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP015C05+          CAATCTCATTGCTAATACAAGACTTTGTCTTC                            
rJMSF049P12-          CAATCTCATTGCTAATACAAGACTTTGTCTTCATTTCCGTTTAATCAAAATTTCTCTATT
                      ____________________________________________________________
consensus             CAATCTCATTGCTAATACAAGACTTTGTCTTCATTTCCGTTTAATCAAAATTTCTCTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049P12-          CTGCCATCGACTGAGTTGAGATGATGACCAAACTGCAGCTCATTGTGTGAAGAAGGTACC
                      ____________________________________________________________
consensus             CTGCCATCGACTGAGTTGAGATGATGACCAAACTGCAGCTCATTGTGTGAAGAAGGTACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049P12-          GCGATATCACATTCCCTCGAAGAAATTTGTTATTTACAATGCTCAGCCTCTAAAAAATTG
                      ____________________________________________________________
consensus             GCGATATCACATTCCCTCGAAGAAATTTGTTATTTACAATGCTCAGCCTCTAAAAAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049P12-          GTTTTTTGCTCCTTTTATCAATCAGAAAGCATCTCTTCCAACTCGGGCTCCTCAGATATT
                      ____________________________________________________________
consensus             GTTTTTTGCTCCTTTTATCAATCAGAAAGCATCTCTTCCAACTCGGGCTCCTCAGATATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049P12-          GATGTGTCATAATCTGAACTTGTTGCATTGAATAAAGCTTCAGAGAATTCTTCACCTTCT
                      ____________________________________________________________
consensus             GATGTGTCATAATCTGAACTTGTTGCATTGAATAAAGCTTCAGAGAATTCTTCACCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049P12-          AAGCCATCTTCTTCATCCTCAGGTTCAGATATTTCTGGTTCATTGTCTGCATTATGATCT
                      ____________________________________________________________
consensus             AAGCCATCTTCTTCATCCTCAGGTTCAGATATTTCTGGTTCATTGTCTGCATTATGATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049P12-          TCAGTTTCTTTCTGTGATGCAATATCTCCGTTACCAATTTTCTGAGGATCTGAATTCGCC
                      ____________________________________________________________
consensus             TCAGTTTCTTTCTGTGATGCAATATCTCCGTTACCAATTTTCTGAGGATCTGAATTCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049P12-          TCTGCTTTGGCACCAGAATCCTCACATATGCAGGTTGAAGGGTTTCATGAAACTCACCCC
                      ____________________________________________________________
consensus             TCTGCTTTGGCACCAGAATCCTCACATATGCAGGTTGAAGGGTTTCATGAAACTCACCCC