Contig 007236:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF045A23Sequence621007236 (4)ref|XP_004144004.1|2e-75PREDICTED: translation machinery-associated protein 22-like [Cucumis sativus] r729007236 (4)ref|XP_004144004.1|3e-60PREDICTED: translation machinery-associated protein 22-like [Cucumis sativus] r
JMSF049H01Sequence654007236 (4)ref|XP_004144004.1|3e-105PREDICTED: translation machinery-associated protein 22-like [Cucumis sativus] r756007236 (4)emb|CDP03156.1|1e-49unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF045A23- GGATGAGTTGTATTCACAACGTTTTTCTCTGCGAAGAGTTGTAA
JMSF049H01- GTAA
                      ____________________________________________________________
consensus GGATGAGTTGTATTCACAACGTTTTTCTCTGCGAAGAGTTGTAA
 
. : . : . : . : . : . :
JMSF045A23- GCAGTGAGAGAGGTTCAGTGAAGTGCTGCGATGGCGGAGAAGCCTCAACCGGTTCAGGTC
JMSF049H01- GCAGTGAGAGAGGTTCAGTGAAGTGCTGCGATGGCGGAGAAGCCTCAACCGGTTCAGGTC
                      ____________________________________________________________
consensus GCAGTGAGAGAGGTTCAGTGAAGTGCTGCGATGGCGGAGAAGCCTCAACCGGTTCAGGTC
 
. : . : . : . : . : . :
JMSF045A23- TTGTACTGCGGAGTATGCGGGTTACCCGCCGAGTATTGTGAGTTCGGACCGGACTTCGAG
JMSF049H01- TTGTACTGCGGAGTATGCGGGTTACCCGCCGAGTATTGTGAGTTCGGACCGGACTTCGAG
                      ____________________________________________________________
consensus TTGTACTGCGGAGTATGCGGGTTACCCGCCGAGTATTGTGAGTTCGGACCGGACTTCGAG
 
. : . : . : . : . : . :
JMSF045A23- AAATGC-AACCCTGGTTGATCCAGAACGCGCCCGATCTCTACCCGGATCTCCTTAAAGGA
JMSF049H01- AAATGCAAACCCTGGTTGATCCAGAACGCGCCCGATCTCTACCCGGATCTCCTTAAAGGA
                      ____________________________________________________________
consensus AAATGCAAACCCTGGTTGATCCAGAACGCGCCCGATCTCTACCCGGATCTCCTTAAAGGA
 
. : . : . : . : . : . :
JMSF045A23- GCCGGTGGAAAAGAAGCAGATAAAATATCTCATCAGCTCCAATCAACTTCAATCTCCGAT
JMSF049H01- GCCGGTGGAAAAGAAGCAGATAAAATATCTCATCAGCTCCAATCAACTTCAATCTCCGAT
rJMSF045A23+ TCCAATCAACTTCAATCTCCGAT
                      ____________________________________________________________
consensus GCCGGTGGAAAAGAAGCAGATAAAATATCTCATCAGCTCCAATCAACTTCAATCTCCGAT
 
. : . : . : . : . : . :
JMSF045A23- GCTGGAGCAGGTTCTTCAGCTCCTAAGCAGGAAGAAGTGAAACGGCTTCCAGGTGGAAAG
JMSF049H01- GCTGGAGCAGGTTCTTCAGCTCCTAAGCAGGAAGAAGTGAAACGGCTTCCAGGTGGAAAG
rJMSF045A23+ GCTGGAGCAGGTTCTTCAGCTCCTAAGCAGGAAGAAGTGAAACGGCTTCCAGGTGGAAAG
                      ____________________________________________________________
consensus GCTGGAGCAGGTTCTTCAGCTCCTAAGCAGGAAGAAGTGAAACGGCTTCCAGGTGGAAAG
 
. : . : . : . : . : . :
JMSF045A23- ATAAAAAAGAAAGAGAAGCAGGAAATTGTGATTGAAAAGATGACTCGCAACAAGCGAAAA
JMSF049H01- ATAAAAAAGAAAGAGAAGCAGGAAATTGTGATTGAAAAGATGACTCGCAACAAGCGAAAA
rJMSF045A23+ ATAAAAAAGAAAGAGAAGCAGGAAATTGTGATTGAAAAGATGACTCGCAACAAGCGAAAA
rJMSF049H01+ ATTGTGATTGAAAAGATGACTCGCAACAAGCGAAAA
                      ____________________________________________________________
consensus ATAAAAAAGAAAGAGAAGCAGGAAATTGTGATTGAAAAGATGACTCGCAACAAGCGAAAA
 
. : . : . : . : . : . :
JMSF045A23- TGCATCACCACCATAAAGGGGCTGGAATTATTTGGCATCAAACTAAGTGATGCTTCAAAG
JMSF049H01- TGCATCACCACCATAAAGGGGCTGGAATTATTTGGCATCAAACTAAGTGATGCTTCAAAG
rJMSF045A23+ TGCATCACCACCATAAAGGGGCTGGAATTATTTGGCATCAAACTAAGTGATGCTTCAAAG
rJMSF049H01+ TGCATCACCACCATAAAGGGGCTGGAATTATTNGGCATCAAACTAAGTGATGCTTCAAAG
                      ____________________________________________________________
consensus TGCATCACCACCATAAAGGGGCTGGAATTATTTGGCATCAAACTAAGTGATGCTTCAAAG
 
. : . : . : . : . : . :
JMSF045A23- AAGCTTGGTAAAAAGTTTGCAACTGGAGCCTCTGTTGTTAAGGGCCCAACTGAAAAGGAA
JMSF049H01- AAGCTTGGTAAAAAGTTTGCAACTGGAGCCTCTGTTGTTAAGGGCCCAACTGAAAAGGAA
rJMSF045A23+ AAGCTTGGTAAAAAGTTTGCAACTGGAGCCTCTGTTGTTAAGGGCCCAACTGAAAAGGAA
rJMSF049H01+ AAGCTTGGTAAAAAGTTTGCAACTGGAGCCTCTGTTGTTAAGGGCCCAACTGAAAAGGAA
                      ____________________________________________________________
consensus AAGCTTGGTAAAAAGTTTGCAACTGGAGCCTCTGTTGTTAAGGGCCCAACTGAAAAGGAA
 
. : . : . : . : . : . :
JMSF045A23- CAGATTGATGTTCAAGGAGATATAGCCTATGACATTGTGGATTTTCTTACAGAGACCTGG
JMSF049H01- CAGATTGATGTTCAAGGAGATATAGCCTATGACATTGTGGATTTTCTTACAGAGACCTGG
rJMSF045A23+ CAGATTGATGTTCAAGGAGATATAGCCTATGACATTGTGGATTTTCTTACAGAGACCTGG
rJMSF049H01+ CAGATTGATGTTCAAGGAGATATAGCCTATGACATTGTGGATTTTCTTACAGAGACCTGG
                      ____________________________________________________________
consensus CAGATTGATGTTCAAGGAGATATAGCCTATGACATTGTGGATTTTCTTACAGAGACCTGG
 
. : . : . : . : . : . :
JMSF045A23- CCAGATGTCCCCGAGTCTGCAATTTTCTTTGTTGAAGA
JMSF049H01- CCAGATGTCCCCGAGTCTGCAATTTTCTTTGTTGAAGATGGGAAAAAGGTCCCGGCTGTA
rJMSF045A23+ CCAGATGTCCCCGAGTCTGCAATTTTCTTTGTTGAAGATGGGAAAAAGGTCCCGGCTGTA
rJMSF049H01+ CCAGATGTCCCCGAGTCTGCAATTTTCTTTGTTGAAGATGGGAAAAAGGTCCCGGCTGTA
                      ____________________________________________________________
consensus CCAGATGTCCCCGAGTCTGCAATTTTCTTTGTTGAAGATGGGAAAAAGGTCCCGGCTGTA
 
. : . : . : . : . : . :
JMSF049H01- TAAAATTTTGAAGATGCTGTACCCTTGTTAATGGAAGCAAGCCATTTCA
rJMSF045A23+ TAAAATTTTGAAGATGCTGTACCCTTGTTAATGGAAGCAAGCCATTTCATGCAAAAAACC
rJMSF049H01+ TAAAATTTTGAAGATGCTGTACCCTTGTTAATGGAAGCAAGCCATTTCATGCAAAAAACC
                      ____________________________________________________________
consensus TAAAATTTTGAAGATGCTGTACCCTTGTTAATGGAAGCAAGCCATTTCATGCAAAAAACC
 
. : . : . : . : . : . :
rJMSF045A23+ TTCCATTGTACTACTGCGGACGTATGCAAGATGGTCTATATTAAAACGTAGCGACCCCAT
rJMSF049H01+ TTCCATTGTACTACTGCGGACGTATGCAAGATGGTCTATATTAAAACGTAGCGACCCCAT
                      ____________________________________________________________
consensus TTCCATTGTACTACTGCGGACGTATGCAAGATGGTCTATATTAAAACGTAGCGACCCCAT
 
. : . : . : . : . : . :
rJMSF045A23+ CAAGTATAAGTTGATCCCCGCATTTTCCCAATGAAAGATTTTGACTTGATGGTCCTGTTT
rJMSF049H01+ CAAGTATAAGTTGATCCCCGCATTTTCCCAATGAAAGATTTTGACTTGATGGTCCTGTTT
                      ____________________________________________________________
consensus CAAGTATAAGTTGATCCCCGCATTTTCCCAATGAAAGATTTTGACTTGATGGTCCTGTTT
 
. : . : . : . : . : . :
rJMSF045A23+ AAAGGTATAGAGAAAACATCTGAACAATGTAACTCCCTTTCCTATTGAAGTTTCCCCATC
rJMSF049H01+ AAAGGTATAGAGAAAACATCTGAACAATGTAACTCCCTTTCCTATTGAAGTTTCCCCATC
                      ____________________________________________________________
consensus AAAGGTATAGAGAAAACATCTGAACAATGTAACTCCCTTTCCTATTGAAGTTTCCCCATC
 
. : . : . : . : . : . :
rJMSF045A23+ TTTTAAACTTTCCCTAGTTTTAATCAAGGAGGCAATTAGCATATTTCCGCCCCCTGTATG
rJMSF049H01+ TTTTAAACTTTCCCTAGTTTTAATCAAGGAGGCAATTAGCATATTTCCGCCCCCTGTATG
                      ____________________________________________________________
consensus TTTTAAACTTTCCCTAGTTTTAATCAAGGAGGCAATTAGCATATTTCCGCCCCCTGTATG
 
. : . : . : . : . : . :
rJMSF045A23+ GTTGAAGTAACTCTGCTTGCACTAAAA
rJMSF049H01+ GTTGAAGTAACTCTGCTTGCACTAAAACTTGGATTGACAGACAATTCCAACATTTACCCT
                      ____________________________________________________________
consensus GTTGAAGTAACTCTGCTTGCACTAAAACTTGGATTGACAGACAATTCCAACATTTACCCT
 
. : . : . : . : . : . :
rJMSF049H01+ CAATGCTTATGCTATTTTCCCTTCATAAACACTCTCATATGCCATTATGATGATAAAGAC
                      ____________________________________________________________
consensus CAATGCTTATGCTATTTTCCCTTCATAAACACTCTCATATGCCATTATGATGATAAAGAC
 
. : . : . : . : . : . :
rJMSF049H01+ TGAGAGACATGTATACTGTATTGTATTTTTGTGGCATTACTCTGTAAATTGATGAAATGT
                      ____________________________________________________________
consensus TGAGAGACATGTATACTGTATTGTATTTTTGTGGCATTACTCTGTAAATTGATGAAATGT