Contig 007219:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013D01Sequence449000665 (5)ref|XP_006353467.1|5e-58PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]744007219 (4)ref|XP_006353467.1|4e-91PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]
JMSF032J20Sequence687000665 (5)ref|XP_004251615.1|1e-98PREDICTED: cyclin-dependent kinase F-1 [Solanum lycopersicum]725007219 (4)ref|XP_006353467.1|8e-90PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]
JMSF043L20Sequence737000665 (5)ref|XP_004251615.1|6e-98PREDICTED: cyclin-dependent kinase F-1 [Solanum lycopersicum]753007219 (4)ref|XP_006353467.1|4e-80PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]
JMSF044G13Sequence761000665 (5)ref|XP_004251615.1|6e-98PREDICTED: cyclin-dependent kinase F-1 [Solanum lycopersicum]701007219 (4)ref|XP_006353467.1|2e-55PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF032J20+                                                                    AC
rJMSF013D01+                                                   GGGATTTAGCTCCGCTGAC
                      ____________________________________________________________
consensus                                                      GGGATTTAGCTCCGCTGAC
 
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rJMSF032J20+          TTCATGTGTTGGAACTCGGTGGTTCAGGGCACCTGAGCTGCTGTATGGGTCTGTAAATTA
rJMSF013D01+          TTCATGTGTTGGAACTCGGTGGTTCAGGGCACCTGAGCTGCTGTATGGGTCTGTAAATTA
rJMSF043L20+                                         CCTGAGCTGCTGTATGGGTCTGTAAATTA
                      ____________________________________________________________
consensus             TTCATGTGTTGGAACTCGGTGGTTCAGGGCACCTGAGCTGCTGTATGGGTCTGTAAATTA
 
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rJMSF032J20+          TGGGCCGGAGATAGATTTATGGTCGTTAGGGTGCATTTTTGCTGAGCTTTTGAGCCTAGA
rJMSF013D01+          TGGGCCGGAGATAGATTTATGGTCGTTAGGGTGCATTTTTGCTGAGCTTTTGAGCCTAGA
rJMSF043L20+          TGGGCCGGAGATAGATTTATGGTCGTTAGGGTGCATTTTTGCTGAGCTTTTGAGCCTAGA
                      ____________________________________________________________
consensus             TGGGCCGGAGATAGATTTATGGTCGTTAGGGTGCATTTTTGCTGAGCTTTTGAGCCTAGA
 
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rJMSF032J20+          ACCACTGTTCCCGGGTAGTTCGGACATTGATCAGCTGGGCAGAATTTTCACCATTTTGGG
rJMSF013D01+          ACCACTGTTCCCGGGTAGTTCGGACATTGATCAGCTGGGCAGAATTTTCACCATTTTGGG
rJMSF043L20+          ACCACTGTTCCCGGGTAGTTCGGACATTGATCAGCTGGGCAGAATTTTCACCATTTTGGG
rJMSF044G13+                             TCGGACATTGATCAGCTGGGCAGAATTTTCACCATTTTGGG
                      ____________________________________________________________
consensus             ACCACTGTTCCCGGGTAGTTCGGACATTGATCAGCTGGGCAGAATTTTCACCATTTTGGG
 
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rJMSF032J20+          TAACTTGTCTGAAGAAGTGTGGCCTGGTTGTGTGCATCTTCCAGATTACAAAACAATTTC
rJMSF013D01+          TAACTTGTCTGAAGAAGTGTGGCCTGGTTGTGTGCATCTTCCAGATTACAAAACAATTTC
rJMSF043L20+          TAACTTGTCTGAAGAAGTGTGGCCTGGTTGTGTGCATCTTCCAGATTACAAAACAATTTC
rJMSF044G13+          TAACTTGTCTGAAGAAGTGTGGCCTGGTTGTGTGCATCTTCCAGATTACAAAACAATTTC
                      ____________________________________________________________
consensus             TAACTTGTCTGAAGAAGTGTGGCCTGGTTGTGTGCATCTTCCAGATTACAAAACAATTTC
 
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rJMSF032J20+          ATTCAATAAAGTGGAGAAACCGACAGGGCTGGAAGGATGCCTACCAAACCGCTCCCCTGA
rJMSF013D01+          ATTCAATAAAGTGGAGAAACCGACAGGGCTGGAAGGATGCCTACCAAACCGCTCCCCTGA
rJMSF043L20+          ATTCAATAAAGTGGAGAAACCGACAGGGCTGGAAGGATGCCTACCAAACCGCTCCCCTGA
rJMSF044G13+          ATTCAATAAAGTGGAGAAACCGACAGGGCTGGAAGGATGCCTACCAAACCGCTCCCCTGA
                      ____________________________________________________________
consensus             ATTCAATAAAGTGGAGAAACCGACAGGGCTGGAAGGATGCCTACCAAACCGCTCCCCTGA
 
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rJMSF032J20+          CGAAATCCTTTTGGTGAAAAAGCTCCTTTGCTATGATCCGGCTGGTAGAGCAACATCAAT
rJMSF013D01+          CGAAATCCTTTTGGTGAAAAAGCTCCTTTGCTATGATCCGGCTGGTAGAGCAACATCAAT
rJMSF043L20+          CGAAATCCTTTTGGTGAAAAAGCTCCTTTGCTATGATCCGGCTGGTAGAGCAACATCAAT
rJMSF044G13+          CGAAATCCTTTTGGTGAAAAAGCTCCTTTGCTATGATCCGGCTGGTAGAGCAACATCAAT
                      ____________________________________________________________
consensus             CGAAATCCTTTTGGTGAAAAAGCTCCTTTGCTATGATCCGGCTGGTAGAGCAACATCAAT
 
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rJMSF032J20+          GGAACTGCTGCACGACAAGTATCTTAACGAAGATCCGCTGCCTGTCCCGGTATCTGAGCT
rJMSF013D01+          GGAACTGCTGCACGACAAGTATCTTAACGAAGATCCGCTGCCTGTCCCGGTATCTGAGCT
rJMSF043L20+          GGAACTGCTGCACGACAAGTATCTTAACGAAGATCCGCTGCCTGTCCCGGTATCTGAGCT
rJMSF044G13+          GGAACTGCTGCACGACAAGTATCTTAACGAAGATCCGCTGCCTGTCCCGGTATCTGAGTT
                      ____________________________________________________________
consensus             GGAACTGCTGCACGACAAGTATCTTAACGAAGATCCGCTGCCTGTCCCGGTATCTGAGCT
 
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rJMSF032J20+          GAGAGTTCCTCCCAAGAATAACGAACTTGACGAGGATTCCCCTGGTGAGTGGGGGGATTA
rJMSF013D01+          GAGAGTTCCTCCCAAGAATAACGAACTTGACGAGGATTCCCCTGGTGAGTGGGGGGATTA
rJMSF043L20+          GAGAGTTCCTCCCAAGAATAACGAACTTGACGAGGATTCCCCTGGTGAGTGGGGGGATTA
rJMSF044G13+          GAGAGTTCCTCCCAAGAATAACGAACTTGACGAGGATTCCCCTGGTGAGTGGGGGGATTA
                      ____________________________________________________________
consensus             GAGAGTTCCTCCCAAGAATAACGAACTTGACGAGGATTCCCCTGGTGAGTGGGGGGATTA
 
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rJMSF032J20+          CAGAGACTCAGATTCTGATATGGACGATTTTGGGGGAGTTAATTTTTCAAGAACTGAAAA
rJMSF013D01+          CAGAGACTCAGATTCTGATATGGACGATTTTGGGGGAGTTAATTTTTCAAGAACTGAAAA
rJMSF043L20+          CAGAGACTCAGATTCTGATATGGACGATTTTGGGGGAGTTAATTTTTCAAGAACTGAAAA
rJMSF044G13+          CAGAGACTCAGATTCTGATATGGACGATTTTGGGGGAGTTAATTTTTCAAGAACTGAAAA
                      ____________________________________________________________
consensus             CAGAGACTCAGATTCTGATATGGACGATTTTGGGGGAGTTAATTTTTCAAGAACTGAAAA
 
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rJMSF032J20+          TGGTTTCTCAGTTCGGTTTTCCTGAGCCTGATGGTCAAGCTTGTTTCAATACACTTTATT
rJMSF013D01+          TGGTTTCTCAGTTCGGTTTTCCTGAGCCTGATGGTCAAGCTTGTTTCAATACACTTTATT
rJMSF043L20+          TGGTTTCTCAGTTCGGTTTTCCTGAGCCTGATGGTCAAGCTTGTTTCAATACACTTTATT
rJMSF044G13+          TGGTTTCTCAGTTCGGTTTTCCTGAGCCTGATGGTCAAGCTTGTTTCAATACACTTTATT
                      ____________________________________________________________
consensus             TGGTTTCTCAGTTCGGTTTTCCTGAGCCTGATGGTCAAGCTTGTTTCAATACACTTTATT
 
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rJMSF032J20+          GTTAAGTTATATAGACATGTGAAGAACTAAAAAAGCATTGTGCCCTCCACTCCACTTTGG
rJMSF013D01+          GTTAAGTTATATAGACATGTGAAGAACTAAAAAAGCATTGTGCCCTCCACTCCACTTTGG
rJMSF043L20+          GTTAAGTTATATAGACATGTGAAGAACTAAAAAAGCATTGTGCCCTCCACTCCACTTTGG
rJMSF044G13+          GTTAAGTTATATAGACATGTGAAGAACTAAAAAAGCATTGTGCCCTCCACTCCACTTTGG
                      ____________________________________________________________
consensus             GTTAAGTTATATAGACATGTGAAGAACTAAAAAAGCATTGTGCCCTCCACTCCACTTTGG
 
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rJMSF032J20+          TCTTTGGCTATATATTTGAAACTGTTATTCCATTCATGTAGGTGTCAGAAGGAAC     
rJMSF013D01+          TCTTTGGCTATATATTTGAAACTGTTATTCCATTCATGTAGGTGTCAGAAGGAAC     
rJMSF043L20+          TCTTTGGCTATATATTTGAAACTGTTATTCCATTCATGTAGGTGTCAGAAGGAACATATA
rJMSF044G13+          TCTTTGGCTATATATTTGAAACTGTTATTCCATTCATGTAGGTGTCAGAAGGAACATATA
                      ____________________________________________________________
consensus             TCTTTGGCTATATATTTGAAACTGTTATTCCATTCATGTAGGTGTCAGAAGGAACATATA
 
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rJMSF043L20+          CCCCCATTTTGGTCATTAATCTACACAACATTAGAAGCAAAGCGTCTTCCTGCCTGCCTG
rJMSF044G13+          CCCCCATTTTGGTCATTAATCTACACAACATTAGAAGCAAAGCGTCTTCCTGCCTGCCTG
                      ____________________________________________________________
consensus             CCCCCATTTTGGTCATTAATCTACACAACATTAGAAGCAAAGCGTCTTCCTGCCTGCCTG
 
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rJMSF043L20+          GCTA                                                        
rJMSF044G13+          GCTATATATTATTGTGCTTTGATTTATTTTATAAGTAAAACCATCCTGATTACTCCAAAT
                      ____________________________________________________________
consensus             GCTATATATTATTGTGCTTTGATTTATTTTATAAGTAAAACCATCCTGATTACTCCAAAT