Contig 007218:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020E14Sequence683010671 (2)gb|AGW97256.1|5e-157ATP synthase CF1 alpha subunit (chloroplast) [Ipomoea hederifolia]152007218 (2)
JMSF044F08Sequence800010671 (2)gb|AGW97256.1|0.0ATP synthase CF1 alpha subunit (chloroplast) [Ipomoea hederifolia]533007218 (2)gb|AGW97681.1|2e-04ATP synthase CF1 alpha subunit (chloroplast) [Ipomoea pedicellaris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF044F08+ TAATAAACCTCGGNTNGAAGAAATCANATTTTCTANTNAGATATTTACCGNGG
                      ____________________________________________________________
consensus TAATAAACCTCGGNTNGAAGAAATCANATTTTCTANTNAGATATTTACCGNGG
 
. : . : . : . : . : . :
rJMSF044F08+ AAGCNGNAGCCCTTTTGAAAGAAGCTTTTCGGGGCCNAATGGNTCGTTTTNTNCTTCAGC
                      ____________________________________________________________
consensus AAGCNGNAGCCCTTTTGAAAGAAGCTTTTCGGGGCCNAATGGNTCGTTTTNTNCTTCAGC
 
. : . : . : . : . : . :
rJMSF044F08+ NACNAGNATAAAGAAATTTNGNTCAAATTTCNCTTTAANATCCNATCNAGCGNTTCGGAT
                      ____________________________________________________________
consensus NACNAGNATAAAGAAATTTNGNTCAAATTTCNCTTTAANATCCNATCNAGCGNTTCGGAT
 
. : . : . : . : . : . :
rJMSF044F08+ TTCNATATTCAAAAGGTCNTTTGNGGTATCGAAATAAAAAAAAGNTAGAAAGAATTGNGT
                      ____________________________________________________________
consensus TTCNATATTCAAAAGGTCNTTTGNGGTATCGAAATAAAAAAAAGNTAGAAAGAATTGNGT
 
. : . : . : . : . : . :
rJMSF044F08+ CCNATAGGATTTGAACCTNTNCCNAAGGNTTAGAAGNCCTNTACCCTATCCCTTAGGCNA
                      ____________________________________________________________
consensus CCNATAGGATTTGAACCTNTNCCNAAGGNTTAGAAGNCCTNTACCCTATCCCTTAGGCNA
 
. : . : . : . : . : . :
rJMSF044F08+ TGGNCGCNTTTCNTTNNGNTTTTTTGGNATTTTTGCTTTCCCCCNTTTTGTTTGAAACNA
                      ____________________________________________________________
consensus TGGNCGCNTTTCNTTNNGNTTTTTTGGNATTTTTGCTTTCCCCCNTTTTGTTTGAAACNA
 
. : . : . : . : . : . :
rJMSF020E14+ TTTT
rJMSF044F08+ AAAAAGAATCGGATTGGGNTTGTGGGATTAGNTTACGGGATCTATATGNGNGATNTTTTT
                      ____________________________________________________________
consensus AAAAAGAATCGGATTGGGNTTGTGGGATTAGNTTACGGGATCTATATGNGNGATNTTTTT
 
. : . : . : . : . : . :
rJMSF020E14+ TTTTTTNAATTCTATATTTACCAATTTATATACTGACCAATATTCCAANTCGAAAGATCT
rJMSF044F08+ TTTTTTTAATTCTATATNTACCAATTTATATATTGACCAATATTCTAATTCGAAAGATCT
                      ____________________________________________________________
consensus TTTTTTTAATTCTATATTTACCAATTTATATATTGACCAATATTCTAATTCGAAAGATCT
 
. : . : . : . : . : . :
rJMSF020E14+ CAAAATCGATATTTCGAATTCTAAATTCGAATCAAATGAAATT
rJMSF044F08+ CAAAATCGATATTTCGAATTCNAAATTCGAATCAAATGAAATTATNTCAATTCCAAATTT
                      ____________________________________________________________
consensus CAAAATCGATATTTCGAATTCTAAATTCGAATCAAATGAAATTATNTCAATTCCAAATTT