Contig 007203:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037M09Sequence647006628 (2)ref|XP_006364178.1|3e-04PREDICTED: putative late blight resistance protein homolog R1B-16-like [Solanum701007203 (2)
JMSF041H07Sequence827006628 (2)dbj|BAD18094.1|1e-30NBS-LRR protein [Ipomoea batatas]761007203 (2)

Alignment

This contig is upended


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rJMSF041H07+                            AGGTAATATTCTACAATTTAATTTGTGGATTTTTGCAACCTA
                      ____________________________________________________________
consensus                               AGGTAATATTCTACAATTTAATTTGTGGATTTTTGCAACCTA
 
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rJMSF037M09+                                 TTCAATGAAGTATTTTCTTTAAATTAAAG-TTTCTGA
rJMSF041H07+          TATTATATTCTGAGCCTTATGATTTCAATGAAGTATTTTCTTTAAATTAAAGTTTTCTGA
                      ____________________________________________________________
consensus             TATTATATTCTGAGCCTTATGATTTCAATGAAGTATTTTCTTTAAATTAAAGTTTTCTGA
 
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rJMSF037M09+          GCGTTCATGTTTCATGTCTCTTCATGTTTCTTATTTGGTTTCCATTTTGAGGATGAAAGC
rJMSF041H07+          GCGTTCATGTTTCATGTCTCTTCATGTTTCTTATTTGGTTTCCATTTTGAGGATGAAAGC
                      ____________________________________________________________
consensus             GCGTTCATGTTTCATGTCTCTTCATGTTTCTTATTTGGTTTCCATTTTGAGGATGAAAGC
 
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rJMSF037M09+          TGAGAGGAATAGAGCACAATTTATCACACATTTGAGCGTGGACGACATGGGGTCATTACT
rJMSF041H07+          TGAGAGGAATAGAGCACAATTTATCACACATTTGAGCGTGGACGACATGGGGTCATTACT
                      ____________________________________________________________
consensus             TGAGAGGAATAGAGCACAATTTATCACACATTTGAGCGTGGACGACATGGGGTCATTACT
 
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rJMSF037M09+          CGGATTCAGCAAAAAAAGACATGAAACCAAACTTTATAATTTGTATGGAGCTACATTCTT
rJMSF041H07+          CGGATTCAGCAAAAAAAGACATGAAACCAAACTTTATAATTTGTATGGAGCTACATTCTT
                      ____________________________________________________________
consensus             CGGATTCAGCAAAAAAAGACATGAAACCAAACTTTATAATTTGTATGGAGCTACATTCTT
 
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rJMSF037M09+          ATGCATGTAATTTGTGGATAATTTCCAATGCTGTATGTATCCAACTTTTGTTGATGTAGT
rJMSF041H07+          ATGCATGTAATTTGTGGATAATTTCCAATGCTGTATGTATCCAACTTTTGTTGATGTAGT
                      ____________________________________________________________
consensus             ATGCATGTAATTTGTGGATAATTTCCAATGCTGTATGTATCCAACTTTTGTTGATGTAGT
 
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rJMSF037M09+          TTGTATTGTTTCTTGGACGAGCAGAGCTACCTACGGCTCCGATCCATCATCCTCTTGCCA
rJMSF041H07+          TTGTATTGTTTCTTGGACGAGCAGAGCTACCTACGGCTCCGATCCATCATCCTCTTGCCA
                      ____________________________________________________________
consensus             TTGTATTGTTTCTTGGACGAGCAGAGCTACCTACGGCTCCGATCCATCATCCTCTTGCCA
 
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rJMSF037M09+          GACGGTACCTTTGTTGATGCTGCTAATGGAGTAATGGACCGTTACCGCATTGCACAAGCC
rJMSF041H07+          GACGGTACCTTTGTTGATGCTGCTAATGGAGTAATGGACCGTTACCGCATTGCACAAGCC
                      ____________________________________________________________
consensus             GACGGTACCTTTGTTGATGCTGCTAATGGAGTAATGGACCGTTACCGCATTGCACAAGCC
 
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rJMSF037M09+          CTTTAATGGCGGAATCTATGGCATGTAAGGAAGCTCTAACGTTGCTGAAAATTCAGGAAG
rJMSF041H07+          CTTTAATGGCGGAATCTATGGCATGTAAGGAAGCTCTAACGTTGCTGAAAATTCAGGAAG
                      ____________________________________________________________
consensus             CTTTAATGGCGGAATCTATGGCATGTAAGGAAGCTCTAACGTTGCTGAAAATTCAGGAAG
 
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rJMSF037M09+          TGACTACAGTTTGTCTTCTCTCAGATTGTTCTACTCTTTGTCACAGATTGGCCAATTCTT
rJMSF041H07+          TGACTACAGTTTGTCTTCTCTCAGATTGTTCTACTCTTTGTCACAGATTGGCCAATTCTT
                      ____________________________________________________________
consensus             TGACTACAGTTTGTCTTCTCTCAGATTGTTCTACTCTTTGTCACAGATTGGCCAATTCTT
 
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rJMSF037M09+          CGACGAATTACAAGTCTTACAAGTCTTACGTTGGCATTACCATTACAGATTGTAGGGCCC
rJMSF041H07+          CGACGAATTACAAGTCTTACAAGTCTTACGTTGGCATTACCATTACAGATTGTAGGGCCC
                      ____________________________________________________________
consensus             CGACGAATTACAAGTCTTACAAGTCTTACGTTGGCATTACCATTACAGATTGTAGGGCCC
 
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rJMSF037M09+          GTATGATGAGATCTTTTAATGCTTGTTCTATTCAGTTTATTCCATGTTCTTTTAATTCTC
rJMSF041H07+          GTATGATGAGATCTTTTAATGCTTGTTCTATTCAGTTTATTCCATGTTCTTTTAATTCTC
                      ____________________________________________________________
consensus             GTATGATGAGATCTTTTAATGCTTGTTCTATTCAGTTTATTCCATGTTCTTTTAATTCTC
 
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rJMSF037M09+          TAGCACATTATTTAGTTACCAGTAGCCTATCCTCAGGTAAACCAGTTTGTA         
rJMSF041H07+          TAGCACATTATTTAGTTA-CAGTAGCCTATCCTCAGGTAAAACAGTTTGTANCTGAGACT
                      ____________________________________________________________
consensus             TAGCACATTATTTAGTTACCAGTAGCCTATCCTCAGGTAAACCAGTTTGTANCTGAGACT