Contig 007197:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040I18Sequence822007197 (2)
JMSF048C09Sequence682013517 (5)ref|XP_009617749.1|3e-71PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X3 [Nicotiana tomentosiformis]697007197 (2)

Alignment

This contig is upended


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rJMSF040I18+                            GTTTGAGGATATTGACAGTCCATGNACAATGGAAAGAANCTG
                      ____________________________________________________________
consensus                               GTTTGAGGATATTGACAGTCCATGNACAATGGAAAGAANCTG
 
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rJMSF040I18+          CCTTANTAACATGCTTTTGGNGTCTTGGTAGTTTCTTTTCTNGGTAAGCTCTGAACTACA
                      ____________________________________________________________
consensus             CCTTANTAACATGCTTTTGGNGTCTTGGTAGTTTCTTTTCTNGGTAAGCTCTGAACTACA
 
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rJMSF048C09+                             TTTCATAAAGCATGACTGTTTGTAAAAATCTGATAACCATG
rJMSF040I18+          GAAATTTTTTTTCTNTTCATTTCATAAAGCATGNCTGTTTGTAAAAATCTGATAACCATG
                      ____________________________________________________________
consensus             GAAATTTTTTTTCTNTTCATTTCATAAAGCATGACTGTTTGTAAAAATCTGATAACCATG
 
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rJMSF048C09+          TATGAATTAATCCTTAAATAGGATTTTTATCGGTATTTGATAGTCTTCCAGTCCTCCCCA
rJMSF040I18+          TATGAANTAATCCTTAAATAGGATTTTGATCGGTATTTGATAGTCTTCCAGTCCTCCCCA
                      ____________________________________________________________
consensus             TATGAATTAATCCTTAAATAGGATTTTTATCGGTATTTGATAGTCTTCCAGTCCTCCCCA
 
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rJMSF048C09+          TTAACATAAGAAATATAGTTGGTATATAGAGTTGTAGAGAGATTACACTCAAATCTCAAT
rJMSF040I18+          TTAACATAAGAAATATAGTTGGTATATAGAGTTGTAGAGAGATTACACTCAAATCTCAAT
                      ____________________________________________________________
consensus             TTAACATAAGAAATATAGTTGGTATATAGAGTTGTAGAGAGATTACACTCAAATCTCAAT
 
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rJMSF048C09+          ACATAGCTGCTCATGGTACCTTTAGTTATGTCATACTCTTTGAAGTCTGTGATTGTATCA
rJMSF040I18+          ACATAGCTGCTCATGGTACCTTTAGNTATGTCATACTCTTTGAAGTCTGNGATTGTATCA
                      ____________________________________________________________
consensus             ACATAGCTGCTCATGGTACCTTTAGTTATGTCATACTCTTTGAAGTCTGTGATTGTATCA
 
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rJMSF048C09+          GAGATTAGGTCATTCATATGACATAACAAGCACAATAAATGCCTGGATAACTAGCTACTT
rJMSF040I18+          GAGATTAGGTCATTCATANGACATAACAAGCACAATAAATGCCTGGATAACTAGCTACTN
                      ____________________________________________________________
consensus             GAGATTAGGTCATTCATATGACATAACAAGCACAATAAATGCCTGGATAACTAGCTACTT
 
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rJMSF048C09+          GCTTCTAACTTCTTCCTTACTTATTTTCTTGCAGGTACCGTAATTCTTTTCTCTACTCCT
rJMSF040I18+          GNTTCTAACTTCTTCCTTACTTATTTTCTTGCAGGTACCGTAATTCTTTTCTCTACTCTT
                      ____________________________________________________________
consensus             GCTTCTAACTTCTTCCTTACTTATTTTCTTGCAGGTACCGTAATTCTTTTCTCTACTCTT
 
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rJMSF048C09+          TCCAGCTAGACGATTTTTCTTCCCATTGTCTTGGTGGTGAACTGTAGTACATCAGAACAG
rJMSF040I18+          TCCAGCTAGACGATTTTTCTTCCCATTGTCTTGGTGGTGAACTGTAGTACATCNGAACAG
                      ____________________________________________________________
consensus             TCCAGCTAGACGATTTTTCTTCCCATTGTCTTGGTGGTGAACTGTAGTACATCAGAACAG
 
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rJMSF048C09+          CTTAGCTTAAAATACAAATAGGATGCACCTCGTCCGTCGGTAATATTACCACCTTTTGAC
rJMSF040I18+          CTTAGCTTAAAATACAAATAGGATGCACCTCGTCCGTCGGTAATATTACCACCTTTNGAC
                      ____________________________________________________________
consensus             CTTAGCTTAAAATACAAATAGGATGCACCTCGTCCGTCGGTAATATTACCACCTTTTGAC
 
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rJMSF048C09+          ATAGCAGGGGATCCCTCTTAGTTTGTTCAGAAGTCCCCTTTTGCCTCTAGGCATATTACG
rJMSF040I18+          ATAGCAGGGGATCCCTCTTAGTTTGTTCAGAAGTCCCCTTTTGCCTCTAGGCATATTACG
                      ____________________________________________________________
consensus             ATAGCAGGGGATCCCTCTTAGTTTGTTCAGAAGTCCCCTTTTGCCTCTAGGCATATTACG
 
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rJMSF048C09+          AGGGAGGCAACATCATGTATATTTTGTCATACAGTTTCAGATACCGATATATAAATATAA
rJMSF040I18+          AGGGAGGCAACATCATGTATATTTTGTCATACAGTTTCAGATACCGATATATAAATATAA
                      ____________________________________________________________
consensus             AGGGAGGCAACATCATGTATATTTTGTCATACAGTTTCAGATACCGATATATAAATATAA
 
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rJMSF048C09+          ATGTTTTAGTGGAGTTTATTTCTCGAGCTAGTAGTCACTCACCTTGTGTA          
rJMSF040I18+          ATGTTTTAGTGGAGTTTATTTCTCGAGCTNGTAGTCACTCACCNTGTGTATCAAATTTCN
                      ____________________________________________________________
consensus             ATGTTTTAGTGGAGTTTATTTCTCGAGCTAGTAGTCACTCACCTTGTGTATCAAATTTCN
 
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rJMSF040I18+          CGTCGNGTAAAGAACAACAGTNTAAAGATGGGANTGTGGNCCAGGTNTGAGAAAAAAAAA
                      ____________________________________________________________
consensus             CGTCGNGTAAAGAACAACAGTNTAAAGATGGGANTGTGGNCCAGGTNTGAGAAAAAAAAA