Contig 007175:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF032P10Sequence673007175 (3)gb|KDP30164.1|8e-126hypothetical protein JCGZ_18197 [Jatropha curcas]745007175 (3)ref|XP_009622206.1|7e-83PREDICTED: choline-phosphate cytidylyltransferase 1-like [Nicotiana tomentosifo
JMSF036E04Sequence590022179gb|KDP30164.1|5e-41hypothetical protein JCGZ_18197 [Jatropha curcas]745007175 (3)ref|XP_009622206.1|2e-72PREDICTED: choline-phosphate cytidylyltransferase 1-like [Nicotiana tomentosifo

Alignment

This contig is upended


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JMSF032P10- GGAGGCTGA
                      ____________________________________________________________
consensus GGAGGCTGA
 
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JMSF032P10- GAAATTTCACGCGCGCCGGAACACAAAATTATGGAAGATGGAGAGAAGCAAGAGCCGAGC
                      ____________________________________________________________
consensus GAAATTTCACGCGCGCCGGAACACAAAATTATGGAAGATGGAGAGAAGCAAGAGCCGAGC
 
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JMSF032P10- AATCTAGCAATGTCAGCCGCCGCTGAACCGCCCACCGACCGGCCGGTTCGCGTCTATGCC
                      ____________________________________________________________
consensus AATCTAGCAATGTCAGCCGCCGCTGAACCGCCCACCGACCGGCCGGTTCGCGTCTATGCC
 
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JMSF032P10- GACGGAATATACGACCTCTTCCACTTTGGCCATGCCCGATCTCTCGAACAAGCCAAGAAA
                      ____________________________________________________________
consensus GACGGAATATACGACCTCTTCCACTTTGGCCATGCCCGATCTCTCGAACAAGCCAAGAAA
 
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JMSF032P10- CTGTTTCCAAACACATATCTTCTTGTTGGATGTTGCAATGATGAAGTCACTAACAAATTC
                      ____________________________________________________________
consensus CTGTTTCCAAACACATATCTTCTTGTTGGATGTTGCAATGATGAAGTCACTAACAAATTC
 
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JMSF032P10- AAGGGCAAGACTGTTATGACCGATAAGGAGCGATATGAATCTCTTCGTCACTGCAAGTGG
                      ____________________________________________________________
consensus AAGGGCAAGACTGTTATGACCGATAAGGAGCGATATGAATCTCTTCGTCACTGCAAGTGG
 
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JMSF032P10- GTTGATGAAGTTATTCCAGATGCACCTTGGGTGGTCACTCCCGAATTCCTTGAGAAACAT
                      ____________________________________________________________
consensus GTTGATGAAGTTATTCCAGATGCACCTTGGGTGGTCACTCCCGAATTCCTTGAGAAACAT
 
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JMSF032P10- CAGATTGATTATGTGGCTCATGATTCTCTTCCTTATGCTGATGCAAGCGGGGCTGGAAAC
rJMSF032P10+ TGCTGATGCCAGCGGGGCTGGAAAC
rJMSF036E04+ TGCTGATGCCAGCGGGGCTGGAAAC
                      ____________________________________________________________
consensus CAGATTGATTATGTGGCTCATGATTCTCTTCCTTATGCTGATGCCAGCGGGGCTGGAAAC
 
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JMSF032P10- GATGTTTATGAGTTTGTCAAGGCCGTTGGAAAATTCAAGGAGACAAAACGGACTGATGGA
rJMSF032P10+ GATGTTTATGAGTTTGTCAAGGCCGTTGGAAAATTCAAGGAGACAAAACGGACTGATGGA
rJMSF036E04+ GATGTTTATGAG-TTGTCAAGGCCGTTGGAAAATTCAAGGAGACAAAACGGACTGATGGA
                      ____________________________________________________________
consensus GATGTTTATGAGTTTGTCAAGGCCGTTGGAAAATTCAAGGAGACAAAACGGACTGATGGA
 
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JMSF032P10- ATATCCACATCAGATATAATAATGAGGATTATAAAAGATTACAATGAGTATGTGATGCGT
rJMSF032P10+ ATATCCACATCAGATATAATAATGAGGATTATAAAAGATTACAATGAGTATGTGATGCGT
rJMSF036E04+ ATATCCACATCAGATATAATAATGAGGATTATAAAAGATTACAATGAGTATGTGATGCGT
                      ____________________________________________________________
consensus ATATCCACATCAGATATAATAATGAGGATTATAAAAGATTACAATGAGTATGTGATGCGT
 
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JMSF032P10- AATTTGGACAGAGGATATTCAAGAAAGGATCTCGGTTTGAGTTATGTGAAGGAGAAAAGG
rJMSF032P10+ AATTTGGACAGAGGATATTCAAGAAAGGATCTCGGTTTGAGTTATGTGAAGGAGAAAAGG
rJMSF036E04+ AATTTGGACAGAGGATATTCAAGAAAAGATCTCGGTTTGAGTTATGTGAAGGAGAAAAGG
                      ____________________________________________________________
consensus AATTTGGACAGAGGATATTCAAGAAAGGATCTCGGTTTGAGTTATGTGAAGGAGAAAAGG
 
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JMSF032P10- TTAAGAGTAAACAGGGGTTTGAAGACGTTGCAAGAGAGAGTAAAGAAGCACCAAGAGAGA
rJMSF032P10+ TTAAGAGTAAACAGGGGTTTGAAGACGTTGCAAGAGAGAGTAAAGAAGCAACAAGAGAGA
rJMSF036E04+ TTAAGAGTAAACAGGGGTTTGAAGACGTTGCAAGAGAGAGTAAAGAAGCAACAAGAGAGA
                      ____________________________________________________________
consensus TTAAGAGTAAACAGGGGTTTGAAGACGTTGCAAGAGAGAGTAAAGAAGCAACAAGAGAGA
 
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JMSF032P10- GTGG
rJMSF032P10+ GTGGAAGAGAAGATACAAACTGTGGCAAAAACAGCTCGGATGCGTCGTAATTTGTGGGTT
rJMSF036E04+ GTGGAAGAGAAGATACAAACTGTGGCAAAAACAGCTCGGATGCGTCGTAATTTGTGGGTT
                      ____________________________________________________________
consensus GTGGAAGAGAAGATACAAACTGTGGCAAAAACAGCTCGGATGCGTCGTAATTTGTGGGTT
 
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rJMSF032P10+ GAGAATGCCGACCGATTAGTTGCTGGATTTCTCGAAATGTTTGAAGAAGGTTGCCACAAA
rJMSF036E04+ GAGAATGCCGACCGATTAGTTGCTGGATTTCTCGAAATGTTTGAAGAAGGTTGCCACAAA
                      ____________________________________________________________
consensus GAGAATGCCGACCGATTAGTTGCTGGATTTCTCGAAATGTTTGAAGAAGGTTGCCACAAA
 
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rJMSF032P10+ ATGGGCACCGCCATCAGGGACCGAATCCAAGAACAGATAAGCACTACGAATATAAAAGAA
rJMSF036E04+ ATGGGCACCGCCATCAGGGACCGAATCCAAGAACAGATAAGCACTACGAATATAAAAGAA
                      ____________________________________________________________
consensus ATGGGCACCGCCATCAGGGACCGAATCCAAGAACAGATAAGCACTACGAATATAAAAGAA
 
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rJMSF032P10+ CTGTTATATGATAATGAAGACGATGATGACTATTATGAGTACGAGTATTACTATGGTGAT
rJMSF036E04+ CTGTTATATGATAATGAAGACGATGATGACTATTATGAGTACGAGTATTACTATGGTGAT
                      ____________________________________________________________
consensus CTGTTATATGATAATGAAGACGATGATGACTATTATGAGTACGAGTATTACTATGGTGAT
 
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rJMSF032P10+ AGCAGCGAAGAAGATGAAGATGAATACGAATATGGCAAGGGTGAAAAGCGGCCTTCCTTG
rJMSF036E04+ AGCAGCGAAGAAGATGAAGATGAATACGAATATGGCAAGGGTGAAAAGCGGCCTTCCTTG
                      ____________________________________________________________
consensus AGCAGCGAAGAAGATGAAGATGAATACGAATATGGCAAGGGTGAAAAGCGGCCTTCCTTG
 
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rJMSF032P10+ GCCTGGGTGAGTTGATACGTGGAACCGGTTATGTTTACATGAAACAGCAAATGTTTGGCC
rJMSF036E04+ GCCTGGGTGAGTTGATACGTGGAACCGGTTATGTTTACATGAAACAGCAAATGTTTGGCC
                      ____________________________________________________________
consensus GCCTGGGTGAGTTGATACGTGGAACCGGTTATGTTTACATGAAACAGCAAATGTTTGGCC
 
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rJMSF032P10+ TATGGTGAGACTATGATGTGTTTTATGTCAAGTTTCAAACTAGTTTTAGTGTGCCACTTT
rJMSF036E04+ TATGGTGAGACTATGATGTGTTTTATGTCAAGTTTCAAACTAGTTTTAGTGTGCCACTTT
                      ____________________________________________________________
consensus TATGGTGAGACTATGATGTGTTTTATGTCAAGTTTCAAACTAGTTTTAGTGTGCCACTTT
 
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rJMSF032P10+ CACGTATAGGTGTGCTGTTTGTATGTAAATTTGTATCTATCGTGTGATGACACAACTATT
rJMSF036E04+ CACGTATAGGTGTGCTGTTTGTATGTAAATTTGTATCTATCGTGTGATGACACAACTATT
                      ____________________________________________________________
consensus CACGTATAGGTGTGCTGTTTGTATGTAAATTTGTATCTATCGTGTGATGACACAACTATT