Contig 007174:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033G01Sequence720003757 (2)754007174 (2)ref|XP_007043020.1|4e-34Chloroplast-targeted copper chaperone protein [Theobroma cacao] gb|EOX98851.1| C
JMSF035O18Sequence720003757 (2)683007174 (2)ref|XP_007043020.1|1e-34Chloroplast-targeted copper chaperone protein [Theobroma cacao] gb|EOX98851.1| C

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+                                  GCACCCGTAAAAAATGGTAACGGCGGTGAGTGTCGT
                      ____________________________________________________________
consensus                                     GCACCCGTAAAAAATGGTAACGGCGGTGAGTGTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+          CGAGAAAAAGCGCAGAANCCACCGGCGGCGGCGGCGGCATCCACATTATCCTCTTCCAAC
rJMSF035O18+                                               CATCCACATTATCCTCTTCCAAC
                      ____________________________________________________________
consensus             CGAGAAAAAGCGCAGAANCCACCGGCGGCGGCGGCGGCATCCACATTATCCTCTTCCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+          ACTCATGTCTTTCAGGTGGTGGTGATGAGAGTTTCTCTTCATTGTCAGGGCTGTGCTAGT
rJMSF035O18+          ACTCATGTCTTTCAGGTGGTGGTGATGAGAGTTTCTCTTCATTGTCAGGGCTGTGCTAGT
                      ____________________________________________________________
consensus             ACTCATGTCTTTCAGGTGGTGGTGATGAGAGTTTCTCTTCATTGTCAGGGCTGTGCTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+          AAAGTCAAGAAACACCTCTCTAAAATGGAAGGAGTGACATCTTTCAGCATAGACTTAGAG
rJMSF035O18+          AAAGTCAAGAAACACCTCTCTAAAATGGAAGGAGTGACATCTTTCAGCATAGACTTAGAG
                      ____________________________________________________________
consensus             AAAGTCAAGAAACACCTCTCTAAAATGGAAGGAGTGACATCTTTCAGCATAGACTTAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+          AACAAGAAGGTGACGGTGATGGGGAACGTGTCGCCGGCGGGAGTACTCGAAAGCGTATCG
rJMSF035O18+          AACAAGAAGGTGACGGTGATGGGGAACGTGTCGCCGGCGGGAGTACTCGAAAGCGTATCG
                      ____________________________________________________________
consensus             AACAAGAAGGTGACGGTGATGGGGAACGTGTCGCCGGCGGGAGTACTCGAAAGCGTATCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+          AAGGTAAAAAGGGCAGAGTTTTGGCCCTATTGAAGCCGGCAGGCCGCCGGAACATCGCCG
rJMSF035O18+          AAGGTAAAAAGGGCAGAGTTTTGGCCCTATTGAAGCCGGCAGGCCGCCGGAACATCGCCG
                      ____________________________________________________________
consensus             AAGGTAAAAAGGGCAGAGTTTTGGCCCTATTGAAGCCGGCAGGCCGCCGGAACATCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+          GAAAAGTGCAGGGAGTCGAATGATATATAGCTGCCATTAATACCGATCAGATCAGATGAT
rJMSF035O18+          GAAAAGTGCAGGGAGTCGAATGATATATAGCTGCCATTAATACCGATCAGATCAGATGAT
                      ____________________________________________________________
consensus             GAAAAGTGCAGGGAGTCGAATGATATATAGCTGCCATTAATACCGATCAGATCAGATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+          CACATGCATGGAGTATATGTAGTTAGACAAAGTGGTTGTGTAATTAATGGGGCTGGAGGC
rJMSF035O18+          CACATGCATGGAGTATATGTAGTTAGACAAAGTGGTTGTGTAATTAATGGGGCTGGAGGC
                      ____________________________________________________________
consensus             CACATGCATGGAGTATATGTAGTTAGACAAAGTGGTTGTGTAATTAATGGGGCTGGAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+          TGGTCCCCATGATAAAGAGAGTAAAGAATTATAGGGAAACCTAGTCATACATAAGTATTT
rJMSF035O18+          TGGTCCCCATGATAAAGAGAGTAAAGAATTATAGGGAAACCTAGTCATACATAAGTATTT
                      ____________________________________________________________
consensus             TGGTCCCCATGATAAAGAGAGTAAAGAATTATAGGGAAACCTAGTCATACATAAGTATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+          GGATCTTGATCCAATGTGGCTATTATTCTCTTGATTTATGTGCGACATTCTTTCACTATG
rJMSF035O18+          GGATCTTGATCCAATGTGGCTATTATTCTCTTGATTTATGTGCGACATTCTTTCACTATG
                      ____________________________________________________________
consensus             GGATCTTGATCCAATGTGGCTATTATTCTCTTGATTTATGTGCGACATTCTTTCACTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+          TTTTGTGTTTCATGTTTTGGTTTGTTTTGTTTTTTGTTCATCAGCTTATGCTAGCAATTA
rJMSF035O18+          TTTTGTGTTTCATGTTTTGGTTTGTTTTGTTTTTTGTTCATCAGCTTATGCTAGCAATTA
                      ____________________________________________________________
consensus             TTTTGTGTTTCATGTTTTGGTTTGTTTTGTTTTTTGTTCATCAGCTTATGCTAGCAATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+          ATGACAATATAATGTAACTGATAGCTTAGGGAGTATAACATGTACTAAGTAGCTTGGAGT
rJMSF035O18+          ATGACAATATAATGTAACTGATAGCTTAGGGAGTATAACATGTACTAAGTAGCTTGGAGT
                      ____________________________________________________________
consensus             ATGACAATATAATGTAACTGATAGCTTAGGGAGTATAACATGTACTAAGTAGCTTGGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033G01+          GTTGTAAAGATCTTGAGTCTTGACTCGCTTGGTGGTTAGTGCTTGTGTTGT         
rJMSF035O18+          GTTGTAAAGATCTTGAGTCTTGACTCGCTTGGTGGTTAGTGCTTGTGTTGTTAACCCATA
                      ____________________________________________________________
consensus             GTTGTAAAGATCTTGAGTCTTGACTCGCTTGGTGGTTAGTGCTTGTGTTGTTAACCCATA