Contig 007171:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF040I15-                                                                      G
                      ____________________________________________________________
consensus                                                                        G
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF040I15-           GACGAGAGGCTGAAAACATCGCTCCATAACGTCTTCACTTTCTTGCTGCTGCGCAGTGCT
JMSF034P01-                GAGGCTGAAAACATCGCTCCATAACGTCTTCACTTTCTTGCTGCTGCGCAGTGCT
                      ____________________________________________________________
consensus             GACGAGAGGCTGAAAACATCGCTCCATAACGTCTTCACTTTCTTGCTGCTGCGCAGTGCT
 
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JMSF040I15-           ACTGCTCCACTCTCAAGCAACCTCAATTCTATGCAGTGACAGATTGTAAAGGAAATGCCG
JMSF034P01-           ACTGCTCCACTCTCAAGCAACCTCAATTCTATGCAGTGACAGATTGTAAAGGAAATGCCG
                      ____________________________________________________________
consensus             ACTGCTCCACTCTCAAGCAACCTCAATTCTATGCAGTGACAGATTGTAAAGGAAATGCCG
 
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JMSF040I15-           CTTCTTCAAGCTCCATCTTCAGTTACTCTTTCCTTTCTTCCCTTATCTTCACAATCCAAA
JMSF034P01-           CTTCTTCAAGCTCCATCTTCAGTTACTCTTTCCTTTCTTCCCTTATCTTCACAATCCAAA
                      ____________________________________________________________
consensus             CTTCTTCAAGCTCCATCTTCAGTTACTCTTTCCTTTCTTCCCTTATCTTCACAATCCAAA
 
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JMSF040I15-           GCAGGATTATATGTAGCTGAGAACTGTTGCCTTCTCTGCAATTCCCCTTTCCCTTCTCAA
JMSF034P01-           GCAGGATTATATGTAGCTGAGAACTGTTGCCTTCTCTGCAATTCCCCTTTCCCTTCTCAA
                      ____________________________________________________________
consensus             GCAGGATTATATGTAGCTGAGAACTGTTGCCTTCTCTGCAATTCCCCTTTCCCTTCTCAA
 
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JMSF040I15-           AGACACTTGAGGCCATTGAGTGTGGCATCCACCCGTTCAATTTTAACGCCTAAAGCTGCT
JMSF034P01-           AGACACTTGAGGCCATTGAGTGTGGCATCCACCCGTTCAATTTTAACGCCTAAAGCTGCT
                      ____________________________________________________________
consensus             AGACACTTGAGGCCATTGAGTGTGGCATCCACCCGTTCAATTTTAACGCCTAAAGCTGCT
 
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JMSF040I15-           TCTGTGAAAGCTAGTGCTTCTGTGGTATCAAATCAAACCGCTGAGGCTGAAGTACTTAAA
JMSF034P01-           TCTGTGAAAGCTAGTGCTTCTGTGGTATCAAATCAAACCGCTGAGGCTGAAGTACTTAAA
                      ____________________________________________________________
consensus             TCTGTGAAAGCTAGTGCTTCTGTGGTATCAAATCAAACCGCTGAGGCTGAAGTACTTAAA
 
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JMSF040I15-           GCCCTTGCACAGATAATTGATCCAGATTTTGGAACTGATATAGTCTCATGCGGGTTTGTG
JMSF034P01-           GCCCTTGCACAGATAATTGATCCAGATTTTGGAACTGATATAGTCTCATGCGGGTTTGTG
                      ____________________________________________________________
consensus             GCCCTTGCACAGATAATTGATCCAGATTTTGGAACTGATATAGTCTCATGCGGGTTTGTG
 
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JMSF040I15-           AAGGACCTCCTTGTCAATGAGGCTTTGGGAGAGGTTTCATTTCGGCTAGAGCTTACGACT
JMSF034P01-           AAGGACCTCCTTGTCAATGAGGCTTTGGGAGAGGTTTCATTTCGGCTAGAGCTTACGACT
                      ____________________________________________________________
consensus             AAGGACCTCCTTGTCAATGAGGCTTTGGGAGAGGTTTCATTTCGGCTAGAGCTTACGACT
 
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JMSF040I15-           CCAGCATGTCCGATCAAGGACATGTTTGAGCAAAAGGCTAATGAGGTGGTTGCGGCACTT
JMSF034P01-           CCAGCATGTCCGATCAAGGACATGTTTGAGCAAAAGGCTAATGAGGTGGTTGCGGCACTT
                      ____________________________________________________________
consensus             CCAGCATGTCCGATCAAGGACATGTTTGAGCAAAAGGCTAATGAGGTGGTTGCGGCACTT
 
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JMSF040I15-           CCCTGGGTTAAAACGGTGAAGGTGACAATGTCAGCCCAACCAGCAAAACCCGTTTTTGCT
JMSF034P01-           CCCTGGGTTAAAACGGTGAAGGTGACAATGTCAGCCCAACCAGCAAAACCCGTTTTTGCT
JMSF021A16+                                         TCAGCCCAACCAGCAAAACCCGTTTTTGCT
                      ____________________________________________________________
consensus             CCCTGGGTTAAAACGGTGAAGGTGACAATGTCAGCCCAACCAGCAAAACCCGTTTTTGCT
 
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JMSF040I15-           GGACAACTTCCACCAGGGCTGCAAACAAT                               
JMSF034P01-           GGACAACTTCCACCAGGGCTGCAAACAATATCCAATATAGTGGCTGTCTCGAGTTGCAAG
JMSF021A16+           GGACAACTTCCACCAGGGCTGCAAACAATATCCAATATAGTGGCTGTCTCGAGTTGCAAG
                      ____________________________________________________________
consensus             GGACAACTTCCACCAGGGCTGCAAACAATATCCAATATAGTGGCTGTCTCGAGTTGCAAG
 
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JMSF034P01-           G                                                           
JMSF021A16+           GGAGGAGTGGGTAAATCAACTGTAGCGGTCAACCTCGCTTATACTTTGGCTGATATGGGT
                      ____________________________________________________________
consensus             GGAGGAGTGGGTAAATCAACTGTAGCGGTCAACCTCGCTTATACTTTGGCTGATATGGGT
 
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JMSF021A16+           GCTCGAGTTGGTATCTTTGATGCTGATGTATATGGCCCTAGTTTGCCCACAATGGTTTCC
                      ____________________________________________________________
consensus             GCTCGAGTTGGTATCTTTGATGCTGATGTATATGGCCCTAGTTTGCCCACAATGGTTTCC
 
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JMSF021A16+           CCAGAAAACCGGCTGCTTGAAATGAACCCAGAGAAGAAAACCATTATTCCAACAGAATAC
                      ____________________________________________________________
consensus             CCAGAAAACCGGCTGCTTGAAATGAACCCAGAGAAGAAAACCATTATTCCAACAGAATAC
 
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JMSF021A16+           TTGGGTGTCAAGTTGGTGTCTTTTGGATTTGCTGGGCAAGGGCGTGCAATAATGAGGGGA
                      ____________________________________________________________
consensus             TTGGGTGTCAAGTTGGTGTCTTTTGGATTTGCTGGGCAAGGGCGTGCAATAATGAGGGGA
 
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JMSF021A16+           CCAATGGTGTCTGGGGTCATCAACCAACTACTTACTACTACCGAATGGGGAGAATTAGAC
JMSF014B06+                                       TACTTACTACTACCGAATGGGGAGAATTAGAC
                      ____________________________________________________________
consensus             CCAATGGTGTCTGGGGTCATCAACCAACTACTTACTACTACCGAATGGGGAGAATTAGAC
 
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JMSF021A16+           TACCTTGTTATTGACATGCCTCCCGGAACTGGTGATATTCAACTCACCCTGTGCCAGGTT
JMSF014B06+           TACCTTGTTATTGACATGCCTCCCGGAACTGGTGATATTCAACTCACCCTGTGCCAGGTT
                      ____________________________________________________________
consensus             TACCTTGTTATTGACATGCCTCCCGGAACTGGTGATATTCAACTCACCCTGTGCCAGGTT
 
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JMSF021A16+           GTTCCATTGACTGCTGCAGTTATTGTTACCACGCCTCAAAAGTTAGCGTTCATAGACGTT
JMSF014B06+           GTTCCATTGACTGCTGCAGTTATTGTTACCACGCCTCAAAAGTTAGCGTTCATAGACGTT
rJMSF040I15+                  GACTGCTGCAGNTATTGTTACCACGCCTCAAAAGTTAGCGTTCATAGACGTT
                      ____________________________________________________________
consensus             GTTCCATTGACTGCTGCAGTTATTGTTACCACGCCTCAAAAGTTAGCGTTCATAGACGTT
 
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JMSF021A16+           GCAAAGGGAGTTCGCATGTTTTCTAAGCTCAAGGTACCTTGTGTTGCTGTAGTCGAGAAT
JMSF014B06+           GCAAAGGGAGTTCGCATGTTTTCTAAGCTCAAGGTACCTTGTGTTGCTGTAGTCGAGAAT
rJMSF040I15+          GCAAAGGGAGTTCGCATGTTTTCTAAGCTCAAGGTACCTTGTGTTGCTGTAGTCGAGAAT
                      ____________________________________________________________
consensus             GCAAAGGGAGTTCGCATGTTTTCTAAGCTCAAGGTACCTTGTGTTGCTGTAGTCGAGAAT
 
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JMSF021A16+           ATGTGCCACTTCGATGCTGATGGGAAACGCTATTACCCATTTGGTAAAGGCTCAGGTGCT
JMSF014B06+           ATGTGCCACTTCGATGCTGATGGGAAACGCTATTACCCATTTGGTAAAGGCTCAGGTGCT
rJMSF040I15+          ATGTGCCACTTCGATGCTGATGGGAAACGCTATTACCCATTTGGTAAAGGCTCAGGTGCT
rJMSF034P01+                           TGATGGGAAACGCTATTACCCATTTGGTAAAGGCTCAGGTGCT
                      ____________________________________________________________
consensus             ATGTGCCACTTCGATGCTGATGGGAAACGCTATTACCCATTTGGTAAAGGCTCAGGTGCT
 
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JMSF021A16+           CAGGTTGTGCAGCAGTTTGGGATCCCGCATCTGTTTGATCTTCCTATCAGACCAACCCTC
JMSF014B06+           CAGGTTGTGCAGCAGTTTGGGATCCCGCATCTGTTTGATCTTCCTATCAGACCAACCCTC
rJMSF040I15+          CAGGTTGTGCAGCAGTTTGGGATCCCGCATCTGTTTGATCTTCCTATCAGACCAACCCTC
rJMSF034P01+          CAGGTTGTGCAGCAGTTTGGGATCCCGCATCTGTTTGATCTTCCTATCAGACCAACCCTC
                      ____________________________________________________________
consensus             CAGGTTGTGCAGCAGTTTGGGATCCCGCATCTGTTTGATCTTCCTATCAGACCAACCCTC
 
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JMSF021A16+           TCAGCTTCTGGAGATAGTGGAACGCCTGAAGTTGTGGCTGAT                  
JMSF014B06+           TCAGCTTCTGGAGATAGTGGAACGCCTGAAGTTGTGGCTGAT                  
rJMSF040I15+          TCAGCTTCTGGAGATAGTGGAACGCCTGAAGTTGTGGCTGATCCTCGAGGAGAAGTTGCC
rJMSF034P01+          TCAGCTTCTGGAGATAGTGGAACGCCTGAAGTTGTGGCTGATCCTCGAGGAGAAGTTGCC
                      ____________________________________________________________
consensus             TCAGCTTCTGGAGATAGTGGAACGCCTGAAGTTGTGGCTGATCCTCGAGGAGAAGTTGCC
 
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rJMSF040I15+          AGTACGTTCCAAGAGTTGGGTGTCTGTGTAGTGCAACAGTGCGCCAGAATCCGCCAACAA
rJMSF034P01+          AGTACGTTCCAAGAGTTGGGTGTCTGTGTAGTGCAACAGTGCGCCAGAATCCGCCAACAA
                      ____________________________________________________________
consensus             AGTACGTTCCAAGAGTTGGGTGTCTGTGTAGTGCAACAGTGCGCCAGAATCCGCCAACAA
 
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rJMSF040I15+          GTCTCGACTGCAGTGAGTTATGATAGATCTATCAAGGCAATCAAGGTGAAAGTGCCCAAT
rJMSF034P01+          GTCTCGACTGCAGTAAGTTATGATAGATCTATCAAGGCAATCAAGGTGAAAGTGCCCAAT
                      ____________________________________________________________
consensus             GTCTCGACTGCAGTGAGTTATGATAGATCTATCAAGGCAATCAAGGTGAAAGTGCCCAAT
 
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rJMSF040I15+          TCAGACGAAGAATTCTATTTGCACCCTGCAACTGTAAGAAGAAACGACCGCTCTGCTGAA
rJMSF034P01+          TCAGACGAAGAATTCTATTTGCACCCTGCAACTGTAAGAAGAAACGACCGCTCTGCTGAA
                      ____________________________________________________________
consensus             TCAGACGAAGAATTCTATTTGCACCCTGCAACTGTAAGAAGAAACGACCGCTCTGCTGAA
 
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rJMSF040I15+          AGTGTGGTTGAATGGAGCGGTGAGCAGAAACTGCAGTACTCTGATGTACCAGAGGACATC
rJMSF034P01+          AGTGTGGTTGAATGGAGCGGTGAGCAGAAACTGCAGTACTCTGATGTACCAGAGGACATC
                      ____________________________________________________________
consensus             AGTGTGGTTGAATGGAGCGGTGAGCAGAAACTGCAGTACTCTGATGTACCAGAGGACATC
 
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rJMSF040I15+          GAGCCTGAAGAAATTCGCCCCATGGGGAACTATGCTGTATCAATAACCTGGCCAGATGGA
rJMSF034P01+          GAGCCTGAAGAAATTCGCCCCATGGGGAACTATGCTGTATCAATAACCTGGCCAGATGGA
                      ____________________________________________________________
consensus             GAGCCTGAAGAAATTCGCCCCATGGGGAACTATGCTGTATCAATAACCTGGCCAGATGGA
 
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rJMSF040I15+          TTTAGCCAGATTGCTCCTTACGATCAGCTCCAAACAATAGAACGCTTGGTCGAGGTTCCT
rJMSF034P01+          TTTAGCCAGATTGCTCCTTACGATCAGCTCCAAACAATAGAACGCTTGGTCGAGGTTCCT
                      ____________________________________________________________
consensus             TTTAGCCAGATTGCTCCTTACGATCAGCTCCAAACAATAGAACGCTTGGTCGAGGTTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040I15+          GAACTGACTCCTGCACAGCCATGATTGCAAGAAGAAAGATGGTGCAGATAGAATTGAAGA
rJMSF034P01+          GAACTGACTCCTGCACAGCCATGATTGCAAGAAGAAAGATGGTGCAGATAGAATTGAAGA
                      ____________________________________________________________
consensus             GAACTGACTCCTGCACAGCCATGATTGCAAGAAGAAAGATGGTGCAGATAGAATTGAAGA
 
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rJMSF040I15+          TTTGTTTACACAACCTNCCAAAGTTAAAAGAAGATGCATATAGGTGGAGCTAAAAGGACC
rJMSF034P01+          TTTGTTTACACAACCTACCAAAGTTAAAAGAAGATGCATATAGGTGGAGCTAAAAGGACC
                      ____________________________________________________________
consensus             TTTGTTTACACAACCTACCAAAGTTAAAAGAAGATGCATATAGGTGGAGCTAAAAGGACC
 
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rJMSF040I15+          TCTGTGCATACTTTCTATAGATTTGCAGTCTGTAAATTGGCAGTCATGTATTTGTCATTA
rJMSF034P01+          TCTGTGCATACTTTCTATAGATTTGCAGTCTGTAAATTGGCAG-CATGTATTTGTCATTA
                      ____________________________________________________________
consensus             TCTGTGCATACTTTCTATAGATTTGCAGTCTGTAAATTGGCAGTCATGTATTTGTCATTA
 
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rJMSF040I15+          CAACTCAAAAGTGTATCCT                                         
rJMSF034P01+          CAACTCAAAAGTGTATCCTTGAAGTGTGCATTTAACATTCTTGATGACCTTGCAAGTTTA
                      ____________________________________________________________
consensus             CAACTCAAAAGTGTATCCTTGAAGTGTGCATTTAACATTCTTGATGACCTTGCAAGTTTA