Contig 007161:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039L02Sequence401004615 (2)ref|XP_006345439.1|3e-27PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like [Solanum tubero724007161 (6)emb|CDP04646.1|9e-73unnamed protein product [Coffea canephora]
JMSF001I14Sequence432004615 (2)ref|XP_006345439.1|5e-46PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like [Solanum tubero752007161 (6)emb|CDP04646.1|3e-72unnamed protein product [Coffea canephora]
JMSF010B15Sequence248005940 (18)emb|CDX67573.1|1e-26BnaA07g16130D [Brassica napus]709007161 (6)ref|XP_011087799.1|9e-72PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like isoform X2 [Ses
JMSF020C08Sequence680014648ref|XP_009626557.1|3e-85PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X4 [Nic793007161 (6)emb|CDP04646.1|2e-97unnamed protein product [Coffea canephora]
JMSF032H11Sequence682005940 (18)ref|XP_010446199.1|6e-139PREDICTED: actin-85C [Camelina sativa]746007161 (6)emb|CDP04646.1|3e-73unnamed protein product [Coffea canephora]
JMSF045G06Sequence690021176843007161 (6)emb|CDP04646.1|1e-73unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF045G06+                  TTTTTCCATACAAGAGGGGGTTTAAACTCCCGGCCTCTCTTAAGGGATGAGA
                      ____________________________________________________________
consensus                     TTTTTCCATACAAGAGGGGGTTTAAACTCCCGGCCTCTCTTAAGGGATGAGA
 
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rJMSF045G06+          GTGATTCCCCTGTTGTGTTTATCTTAAAAGTTATGGCTTTTTATACATGTAAAAGAAATA
                      ____________________________________________________________
consensus             GTGATTCCCCTGTTGTGTTTATCTTAAAAGTTATGGCTTTTTATACATGTAAAAGAAATA
 
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rJMSF045G06+          CATTTATTTTCGTAAGGAAACAAAAAGTTCATCGTTTTGGCTATTTACTGGAGTTTAAAT
rJMSF010B15+                                                                    TA
rJMSF032H11+                                                                   TTA
                      ____________________________________________________________
consensus             CATTTATTTTCGTAAGGAAACAAAAAGTTCATCGTTTTGGCTATTTACTGGAGTTTATTA
 
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rJMSF045G06+          TACAGATAAATGCTGCACGGACGGAAGGTGCTCATGGGGTGATGGTAGGGCGTGGAGCAT
rJMSF001I14+             AGATAAATGCTGCACGGACGGAAGGTGCTCATGGGGTGATGGTAGGGCGTGGAGCAT
rJMSF010B15+          ACGAGATAAATGCTGCACNGACGGAAGGTGCTCATGGGGTGATGGTAGGGCGTNGAGCAT
rJMFF039L02+             AGATAAATGCTGCACGGACGGAAGGTGCTCATGGGGTGATGGTAGGGCGTGGAGCAT
rJMSF020C08+             AGATAAATGCTGCACGGACGGAAGGTGCTCATGGGGTGATGGTAGGGCGTGGAGCAT
rJMSF032H11+          ACGAGATAAATGCTGCACGGACGGAAGGTGCTCATGGGGTGATGGTAGGGCGTGGAGCAT
                      ____________________________________________________________
consensus             ACGAGATAAATGCTGCACGGACGGAAGGTGCTCATGGGGTGATGGTAGGGCGTGGAGCAT
 
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rJMSF045G06+          ACCACAATCCATGGCAGATTTTAGGAAACGTTGATAGTGCAGTGTACGGCGCACCTCGTA
rJMSF001I14+          ACCACAATCCATGGCAGATTTTAGGAAACGTTGATAGTGCAGTGTACGGCGCACCTCGTA
rJMSF010B15+          ACCACAATCCATGGCAGATTTTAGGAAACGTTGATAGTGCAGTGTACGGCGCACCTCGTA
rJMFF039L02+          ACCACAATCCATGGCAGATTTTAGGAAACGTTGATAGTGCAGTGTACGGCGCACCTCGTA
rJMSF020C08+          ACCACAATCCATGGCAGATTTTAGGAAACGTTGATAGTGCAGTGTACGGCGCACCTCGTA
rJMSF032H11+          ACCACAATCCATGGCAGATTTTAGGAAACGTTGATAGTGCAGTGTACGGCGCACCTCGTA
                      ____________________________________________________________
consensus             ACCACAATCCATGGCAGATTTTAGGAAACGTTGATAGTGCAGTGTACGGCGCACCTCGTA
 
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rJMSF045G06+          GTAATCTGACCCGGCGACAGGTTCTCGAAAAGTACCTGATTTATGGTGATTCAGTATTGA
rJMSF001I14+          GTAATCTGACCCGGCGACAGGTTCTCGAAAAGTACCTGATTTATGGTGATTCAGTATTGA
rJMSF010B15+          GTAATCTGACCCGGCGACAGGTTCTCGAAAAGTACCTGATTTATGGTGATTCAGTATTGA
rJMFF039L02+          GTAATCTGACCCGGCGACAGGTTCTCGAAAAGTACCTGATTTATGGTGATTCAGTATTGA
rJMSF020C08+          GTAATCTGACCCGGCGACAGGTTCTCGAAAAGTACCTGATTTATGGTGATTCAGTATTGA
rJMSF032H11+          GTAATCTGACCCGGCGACAGGTTCTCGAAAAGTACCTGATTTATGGTGATTCAGTATTGA
                      ____________________________________________________________
consensus             GTAATCTGACCCGGCGACAGGTTCTCGAAAAGTACCTGATTTATGGTGATTCAGTATTGA
 
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rJMSF045G06+          AAATGTATGGACAGAGACCAAATGTTAGGGATATTGTCAAGCCTTTGCTCGGGTTGTTTC
rJMSF001I14+          AAATGTATGGACAGAGACCAAATGTTAGGGATATTGTCAAGCCTTTGCTCGGGTTGTTTC
rJMSF010B15+          AAATGTATGGACAGATACCAAATGTTAGGGATATTGTCAAGCCTTTGCTCGGGTTGTTTC
rJMFF039L02+          AAATGTATGGACAGAGACCAAATGTTAGGGATATTGTCAAGCCTTTGCTCGGGTTGTTTC
rJMSF020C08+          AAATGTATGGACAGAGACCAAATGTTAGGGATATTGTCAAGCCTTTGCTCGGGTTGTTTC
rJMSF032H11+          AAATGTATGGACAGATACCAAATGTTAGGGATATTGTCAAGCCTTTGCTCGGGTTGTTTC
                      ____________________________________________________________
consensus             AAATGTATGGACAGAGACCAAATGTTAGGGATATTGTCAAGCCTTTGCTCGGGTTGTTTC
 
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rJMSF045G06+          ATTCGGAGCCTGGAAATAGTCTGTGGAAGCGCAAAGTTGATGCTGCTTTCCTCCACTGCA
rJMSF001I14+          ATTCGGAGCCTGGAAATAGTCTGTGGAAGCGCAAAGTTGATGCTGCTTTCCTCCACTGCA
rJMSF010B15+          ATTCGGAGCCTGGAAATAGTCTGTGGAAGCGCAAAGTTGATGCTGCTTTCCTCCACTGCA
rJMFF039L02+          ATTCGGAGCCTGGAAATAGTCTGTGGAAGCGCAAAGTTGATGCTGCTTTCCTCCACTGCA
rJMSF020C08+          ATTCGGAGCCTGGAAATAGTCTGTGGAAGCGCAAAGTTGATGCTGCTTTCCTCCACTGCA
rJMSF032H11+          ATTCGGAGCCTGGAAATAGTCTGTGGAAGCGCAAAGTTGATGCTGCTTTCCTCCACTGCA
                      ____________________________________________________________
consensus             ATTCGGAGCCTGGAAATAGTCTGTGGAAGCGCAAAGTTGATGCTGCTTTCCTCCACTGCA
 
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rJMSF045G06+          CTACGATCAAATCCATTTTTGACGAGACACTGGTGGCCATACCCGACTTTGTTTTGGACT
rJMSF001I14+          CTACGATCAAATCCATTTTTGACGAGACACTGGTGGCCATACCCGACTTTGTTTTGGACT
rJMSF010B15+          CTACGATCAAATCCATTTTTGACGAGACACTGGTGGCCATACCCGACTTTTTTTTGGACT
rJMFF039L02+          CTACGATCAAATCCATTTTTGACGAGACACTGGTGGCCATACCCGACTTTGTTTTGGACT
rJMSF020C08+          CTACGATCAAATCCATTTTTGACGAGACACTGGTGGCCATACCCGACTTTGTTTTGGACT
rJMSF032H11+          CTACGATCAAATCCATTTTTGACGAGACACTGGTGGCCATACCCGACTTTTTTTTGGACT
                      ____________________________________________________________
consensus             CTACGATCAAATCCATTTTTGACGAGACACTGGTGGCCATACCCGACTTTGTTTTGGACT
 
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rJMSF045G06+          CTCCCGTTGCTGAGATGACCACTGGTTCAACAGATATTTTCGCGAAGGCTAAGGGTATCC
rJMSF001I14+          CTCCCGTTGCTGAGATGACCACTGGTTCAACAGATATTTTCGCGAAGGCTAAGGGTATCC
rJMSF010B15+          CTCCCGTTGCTGAGATGACCACTGGTTCAACAGATATTTTCGCGAAGGCTAAGGGTATCC
rJMFF039L02+          CTCCCGTTGCTGAGATGACCACTGGTTCAACAGATATTTTCGCGAAGGCTAAGGGTATCC
rJMSF020C08+          CTCCCGTTGCTGAGATGACCACTGGTTCAACAGATATTTTCGCGAAGGCTAAGGGTATCC
rJMSF032H11+          CTCCCGTTGCTGAGATGACCACTGGTTCAACAGATATTTTCGCGAAGGCTAAGGGTATCC
                      ____________________________________________________________
consensus             CTCCCGTTGCTGAGATGACCACTGGTTCAACAGATATTTTCGCGAAGGCTAAGGGTATCC
 
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rJMSF045G06+          TGCCGATACCATATGCTGTTAGAGAAGACGAACTAATGTATGCTTAGGTATATGCTTATT
rJMSF001I14+          TGCCGATACCATATGCTGTTAGAGAAGACGAACTAATGTATGCTTAGGTATATGCTTATT
rJMSF010B15+          TGCCGATACCATATGCTGTTAGAGAAGACGAACTAANGTATGCTTAGGTATATGCTTATT
rJMFF039L02+          TGCCGATACCATATGCTGTTAGAGAAGACGAACTAATGTATGCTTAGGTATATGCTTATT
rJMSF020C08+          TGCCGATACCATATGCTGTTAGAGAAGACGAACTAATGTATGCTTAGGTATATGCTTATT
rJMSF032H11+          TGCCGATACCATATGCTGTTAGAGAAGACGAACTAATGTATGCTTAGGTATATGCTTATT
                      ____________________________________________________________
consensus             TGCCGATACCATATGCTGTTAGAGAAGACGAACTAATGTATGCTTAGGTATATGCTTATT
 
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rJMSF045G06+          TTGTTACCCTATAGGCCTATACAACATTCATTATCGTAGACTATGTGCGATAGATTCTAA
rJMSF001I14+          TTGTTACCCTATAGGCCTATACAACATTCATTATCGTAGACTATGTGCGATAGATTCTAA
rJMSF010B15+          TTGTTACCCTATAGGCCTATACAACATTCATTATCGTAGACTATGTGCGATAGATTCTAA
rJMFF039L02+          TTGTTACCCTATAGGCCTATACAACATTCATTATCGTAGACTATGTGCGATAGATTCTAA
rJMSF020C08+          TTGTTACCCTATAGGCCTATACAACATTCATTATCGTAGACTATGTGCGATAGATTCTAA
rJMSF032H11+          TTGTTACCCTATAGGCCTATACAACATTCATTATCGTAGACTATGTGCGATAGATTCTAA
                      ____________________________________________________________
consensus             TTGTTACCCTATAGGCCTATACAACATTCATTATCGTAGACTATGTGCGATAGATTCTAA
 
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rJMSF045G06+          TTCTTCGGGATAAAGATGAGACCAATCCCAAGTAATAACAACAACATCGAAAACGTAGGT
rJMSF001I14+          TTCTTCGGGATAAAGATGAGACCAATCCCAAGTAACAACAACAACATCGAAAACGTAGGT
rJMSF010B15+          TTCTTCGGGATAAAGATGAGACCAATCCCAAGTAACAACAACAACATCGAAAACGTAGGT
rJMFF039L02+          TTCTTCGGGATAAAGATGAGACCAATCCCAAGTAACAACAACAACATCGAAAACGTAGGT
rJMSF020C08+          TTCTTCGGGATAAAGATGAGACCAATCCCAAGTAACAACAACAACATCGAAAACGTAGGT
rJMSF032H11+          TTCTTCGGGATAAAGATGAGACCAATCCCAAGTAACAACAACAACATCGAAAACGTAGGT
                      ____________________________________________________________
consensus             TTCTTCGGGATAAAGATGAGACCAATCCCAAGTAACAACAACAACATCGAAAACGTAGGT
 
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rJMSF045G06+          ATACACTCGAGGGGTTTTTTGTGCTGTTTGTTTGTAAAACCTGATGATGATCCATATAGG
rJMSF001I14+          ATACACTCGAGGGGTTTTTTGTGCTGTTTGTTTGTAAAACCTGATGATGATCCATATAGG
rJMSF010B15+          ATACACTCGAGGGGTTTTTTGTGCTGTTTGTTTGTAAAACCTGATGATGATCCATATAGG
rJMFF039L02+          ATACACTCGAGGGGTTTTTTGTGCTGTTTGTTTGTAAAACCTGATGATGATCCATATAGG
rJMSF020C08+          ATACACTCGAGGGGTTTTTTGTGCTGTTTGTTTGTAAAACCTGATGATGATCC       
rJMSF032H11+          ATACACTCGAGGGGTTTTTTGTGCTGTTTGTTTGTAAAACCTGATGATGATCCATATAGG
                      ____________________________________________________________
consensus             ATACACTCGAGGGGTTTTTTGTGCTGTTTGTTTGTAAAACCTGATGATGATCCATATAGG
 
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rJMSF045G06+          AACGGAATGCT                                                 
rJMSF001I14+          AACGGAATGCTTATAGAATTTATTCAGCTGATACCTGGAGATGTTTGGTAAATAGCT   
rJMSF010B15+          AACGGAATGCTTATAGAATTTATTCAGCTGATA-C                         
rJMFF039L02+          AACGGAATGCTTATAGAATTTATTCAG                                 
rJMSF032H11+          AACGGAATGCTTATAGAATTTATTCAGCTGATA-CTGGAGATGTTTGGTAAATAGCTGTA
                      ____________________________________________________________
consensus             AACGGAATGCTTATAGAATTTATTCAGCTGATA-CTGGAGATGTTTGGTAAATAGCTGTA