Contig 007151:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030I06Sequence653024204ref|XP_009799069.1|231PREDICTED: protein transport protein SEC23-like [Nicotiana sylvestris]751007151 (2)gb|AFX67018.1|3e-63protein transport protein Sec23, partial [Solanum tuberosum]
JMSF041E14Sequence257007151 (2)ref|XP_007153808.1|1e-26hypothetical protein PHAVU_003G066300g [Phaseolus vulgaris] gb|ESW25802.1| hypot

Alignment

This contig is upended


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rJMSF030I06+                                      TTTCAGTATAGTTATATTCCATGGAATGACAA
                      ____________________________________________________________
consensus                                         TTTCAGTATAGTTATATTCCATGGAATGACAA
 
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rJMSF041E14+                                 TACCACAAGCAACCAGAACACGTGGCATTTGCACAAT
rJMSF030I06+          TAGCTCAATGGAGAAATATGGGCTACCACAAGCAACCAGAACACGTGGCATTTGCACAAT
                      ____________________________________________________________
consensus             TAGCTCAATGGAGAAATATGGGCTACCACAAGCAACCAGAACACGTGGCATTTGCACAAT
 
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rJMSF041E14+          TACTGCAAGCTCCACATGATGAGGCCCAGTCACTAATTCAAGAGCGGTTTTCNTATTCCG
rJMSF030I06+          TACTGCAAGCTCCACATGATGAGGCCCAGTCACTAATTCAAGAGCGG-TTTCCTATTCCG
                      ____________________________________________________________
consensus             TACTGCAAGCTCCACATGATGAGGCCCAGTCACTAATTCAAGAGCGGTTTTCCTATTCCG
 
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rJMSF041E14+          AGATNAGTGGTGTGCGATCAGCATGGCTCCCAGGCAAGGTTNTTGTTGGCAAAGCTGAAT
rJMSF030I06+          AGATTAGTGGTGTGCGATCAGCATGGCTCCCAGGCAAGGTTTTTGTTGGCAAAGCTGAAT
                      ____________________________________________________________
consensus             AGATTAGTGGTGTGCGATCAGCATGGCTCCCAGGCAAGGTTTTTGTTGGCAAAGCTGAAT
 
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rJMSF041E14+          CCATCGGCCACATACNACAGNGCNCATGANATGTCAGCCGGAACNGATGTCATCTTTACT
rJMSF030I06+          CCATCGGCCACATACAACAGTGCACATGATATGTCAGCCGGAACAGATGTCATCTTTACT
                      ____________________________________________________________
consensus             CCATCGGCCACATACAACAGTGCACATGATATGTCAGCCGGAACAGATGTCATCTTTACT
 
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rJMSF041E14+          GATGATGTGAGTCTTCAAGTATTCT                                   
rJMSF030I06+          GATGATGTGAGTCTTCAAGTATTCTTCGAACATCTTCAGCGGCTAGCAGTTCAATCTTCG
                      ____________________________________________________________
consensus             GATGATGTGAGTCTTCAAGTATTCTTCGAACATCTTCAGCGGCTAGCAGTTCAATCTTCG
 
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rJMSF030I06+          TAAGCAGAGATAAAGAGATCGATCTTGCACCGTCATCATGTCAGTTTGTTTTGTAAAATC
                      ____________________________________________________________
consensus             TAAGCAGAGATAAAGAGATCGATCTTGCACCGTCATCATGTCAGTTTGTTTTGTAAAATC
 
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rJMSF030I06+          CTAGTGAGTTCTCATCATCTCCCCAACAATCCAGCTTTTTATTCTCTACAGAACTTACTC
                      ____________________________________________________________
consensus             CTAGTGAGTTCTCATCATCTCCCCAACAATCCAGCTTTTTATTCTCTACAGAACTTACTC
 
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rJMSF030I06+          TCCGCCCGCCATTCATATGATAAAACTCGTAAAAAGGTCAGATCCAAAATTATATAGACT
                      ____________________________________________________________
consensus             TCCGCCCGCCATTCATATGATAAAACTCGTAAAAAGGTCAGATCCAAAATTATATAGACT
 
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rJMSF030I06+          GTAGGACATCATTAACATTCTTCAGTGGTTTAGGAACATATACTCGCTTCCTTTGAAAAA
                      ____________________________________________________________
consensus             GTAGGACATCATTAACATTCTTCAGTGGTTTAGGAACATATACTCGCTTCCTTTGAAAAA
 
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rJMSF030I06+          TAAGGAGCAGAGGTGACTCAGTTGATTCGAGTTTTTGGAAAGAAGAGCAGGGGTTAACCC
                      ____________________________________________________________
consensus             TAAGGAGCAGAGGTGACTCAGTTGATTCGAGTTTTTGGAAAGAAGAGCAGGGGTTAACCC
 
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rJMSF030I06+          AAAGAACGTTGAAATGAGAAGATAGCGTTTTTTTCTTTTTTCTTTTTTTGGTCCTTTTCT
                      ____________________________________________________________
consensus             AAAGAACGTTGAAATGAGAAGATAGCGTTTTTTTCTTTTTTCTTTTTTTGGTCCTTTTCT
 
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rJMSF030I06+          TTTTGTTTCTATTTTGGTAGCAGTGAAGTTCATTACTTAGTATCAATTTTGTATGAATTG
                      ____________________________________________________________
consensus             TTTTGTTTCTATTTTGGTAGCAGTGAAGTTCATTACTTAGTATCAATTTTGTATGAATTG