Contig 007142:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001C14Sequence338012050 (3)ref|XP_009768622.1|4e-29PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11769007142 (3)ref|XP_009757564.1|1e-84PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [
JMSF028J01Sequence660012050 (3)ref|XP_009768622.1|1e-50PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11705007142 (3)ref|XP_009757564.1|1e-66PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [
JMSF031J08Sequence671012050 (3)ref|XP_009768622.1|1e-66PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11778007142 (3)ref|XP_009757564.1|6e-92PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+                     AATGCGGTATGTTAGATNGGAGAAGCGCTTGNAATTATCTTAGGAGNTG
                      ____________________________________________________________
consensus                        AATGCGGTATGTTAGATNGGAGAAGCGCTTGNAATTATCTTAGGAGNTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          CTCGAGGATTGTTATATCTTCATCAAGATTCTAGATTAAAAATTATTCACAGAGATTTAA
rJMSF001C14+                                                          ACAGAGATTTAA
                      ____________________________________________________________
consensus             CTCGAGGATTGTTATATCTTCATCAAGATTCTAGATTAAAAATTATTCACAGAGATTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          AGGCTGGCAATATTCTGTTAGATGCTTCCATGCACCCGAAGATATCTGACTTTGGAATGG
rJMSF001C14+          NGGCTGGCAATATTCTGTTAGATGCTTCCATGCACCCGAAGATATCTGACTTTGGAATGG
                      ____________________________________________________________
consensus             AGGCTGGCAATATTCTGTTAGATGCTTCCATGCACCCGAAGATATCTGACTTTGGAATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          CTAGAATTTTTGGAGGGGACCAAATTGAAGCAAGCACAAATAGAGTGGTTGGGACATATG
rJMSF001C14+          CTAGAATTTTTGGAGGGGACCAAATTGAAGCAAGCACAAATAGAGTGGTTGGGACATATG
rJMSF028J01+                         GGGACCAAATTGAAGCCAGCACAAATAGAGTGGTTGGGACATATG
                      ____________________________________________________________
consensus             CTAGAATTTTTGGAGGGGACCAAATTGAAGCAAGCACAAATAGAGTGGTTGGGACATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          GGTATATGTCACCGGAATATGCAATGGAAGGCCATTTTTCAGAAAAGTCTGATGTCTATA
rJMSF001C14+          GGTATATGTCACCGGAATATGCAATGGAAGGCCATTTTTCAGAAAAGTCTGATGTCTATA
rJMSF028J01+          GGTATATGTCACCGGAATATGCAATGGAAGGCCATTTTTCAGAAAAGTCTGATGTCTATA
                      ____________________________________________________________
consensus             GGTATATGTCACCGGAATATGCAATGGAAGGCCATTTTTCAGAAAAGTCTGATGTCTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          GTTTTGGTGTTTTATTGCTGGAGATTGTGACGGGAAAGAAGAACAAAAATCCAAATAACG
rJMSF001C14+          GTTTTGGTGTTTTATTGCTGGAGATTGTGACGGGAAAGAAGAACAAAAATCCAAATAACG
rJMSF028J01+          GTTTTGGTGTTTTATTGCTGGAGATTGTGACGGGAAAGAAGAACAAAAATCCAAATAACG
                      ____________________________________________________________
consensus             GTTTTGGTGTTTTATTGCTGGAGATTGTGACGGGAAAGAAGAACAAAAATCCAAATAACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          AAAAATCTATGAATTTAATAACAAATGTATGGGATTTCTGGAACGAAAATAGGGCATTTG
rJMSF001C14+          AAAAATCTATGAATTTAATAACAAATGTATGGGATTTCTGGAACGAAAATAGGGCATTTG
rJMSF028J01+          AAAAATCTATGAATTTAATAACAAATGTATGGGATTTCTGGAACGAAAATAGGGCATTTG
                      ____________________________________________________________
consensus             AAAAATCTATGAATTTAATAACAAATGTATGGGATTTCTGGAACGAAAATAGGGCATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          ATATAGTTGATCCATCATTAGGAGAGTGGTATGATGATCGACAAGTTTTGAGATGCATCC
rJMSF001C14+          ATATAGTTGATCCATCATTAGGAGAGTGGTATGATGATCGACAAGTTTTGAGATGCATCC
rJMSF028J01+          ATATAGTTGATCCATCATTAGGAGAGTGGTATGATGATCGACAAGTTTTGAGATGCATCC
                      ____________________________________________________________
consensus             ATATAGTTGATCCATCATTAGGAGAGTGGTATGATGATCGACAAGTTTTGAGATGCATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          ATGTTGGGTTGTTATGCGTTCAATCATATTCAGACGATAGACCAATCATGTCAGAAGTGA
rJMSF001C14+          ATGTTGGGTTGTTATGCGTTCAATCATATTCAGACGATAGACCAATCATGTCAGAAGTGA
rJMSF028J01+          ATGTTGGGTTGTTATGCGTTCAATCATATTCAGACGATAGACCAATCATGTCAGAAGTGA
                      ____________________________________________________________
consensus             ATGTTGGGTTGTTATGCGTTCAATCATATTCAGACGATAGACCAATCATGTCAGAAGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          TTTTCATGCTAAGTAATGAAACCGAACTTCCTCAACCTAATCAACCGGGTTTTATATTCA
rJMSF001C14+          TTTTCATGCTAAGTAATGAAACCGAACTTCCTCAACCTAATCAACCGGGTTTTATATTCA
rJMSF028J01+          TTTTCATGCTAAGTAATGAAACCGAACTTCCTCAACCTAATCAACCGGGTTTTATATTCA
                      ____________________________________________________________
consensus             TTTTCATGCTAAGTAATGAAACCGAACTTCCTCAACCTAATCAACCGGGTTTTATATTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          AACATGGAAGTGGTTTTCTACCCTCAACTTCAACGAGTACTCTCGAAAACCAATCTATTA
rJMSF001C14+          AACATGGAAGTGGTTTTCTACCCTCAACTTCAACGAGTACTCTCGAAAACCAATCTATTA
rJMSF028J01+          AACATGGAAGTGGTTTTCTACCCTCAACTTCAACGAGTACTCTCGAAAACCAATCTATTA
                      ____________________________________________________________
consensus             AACATGGAAGTGGTTTTCTACCCTCAACTTCAACGAGTACTCTCGAAAACCAATCTATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          ATGACATGTCGATTACCAAGATTGAAGGTCGCTAACATATATTACCTACTGATTAGGTAT
rJMSF001C14+          ATGACATGTCGATTACCAAGATTGAAGGTCGCTAACATATATTACCTACTGATTAGGTAT
rJMSF028J01+          ATGACATGTCGATTACCAAGATTGAAGGTCGCTAACATATATTACCTACTGATTAGGTAT
                      ____________________________________________________________
consensus             ATGACATGTCGATTACCAAGATTGAAGGTCGCTAACATATATTACCTACTGATTAGGTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          GAAATTATTGTATGGCTCTTTTCAAACTTTTTCCGTTGTTGACTTCTTGTTATTGTCTCA
rJMSF001C14+          GAAATTATTGTATGGCTCTTTTCAAACTTTTTCCGTTGTTGACTTCTTGTTATTGTCTCA
rJMSF028J01+          GAAATTATTGTATGGCTCTTTTCAAACTTTTTCCGTTGTTGACTTCTTGTTATTGTCTCA
                      ____________________________________________________________
consensus             GAAATTATTGTATGGCTCTTTTCAAACTTTTTCCGTTGTTGACTTCTTGTTATTGTCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J08+          TTGTATAAT                                                   
rJMSF001C14+          TTGTATAATATGTTTATTTATTAGGAGATGAAAATAAACTTTTTGTCACATATCTTAGGG
rJMSF028J01+          TTGTATAATATGTTTATTTATTAGGAGATGAAAATAAACTTTTTGTCACATATCTTAGGG
                      ____________________________________________________________
consensus             TTGTATAATATGTTTATTTATTAGGAGATGAAAATAAACTTTTTGTCACATATCTTAGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001C14+          AAAGAGTGTTTGGTTC                                            
rJMSF028J01+          AAAGTGTGTTTGGTTCAGGGAAGGGGAATCAAATANCTTGATAATTTGAATGAATTCTGG
                      ____________________________________________________________
consensus             AAAGTGTGTTTGGTTCAGGGAAGGGGAATCAAATANCTTGATAATTTGAATGAATTCTGG