Contig 007141:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001K15Sequence217006338 (2)ref|XP_006349612.1|7e-07PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like [Solanum tu642007141 (2)gb|KDO51438.1|3e-71hypothetical protein CISIN_1g0090582mg, partial [Citrus sinensis]
JMSF028H16Sequence672006338 (2)ref|XP_004248727.1|2e-62PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Solanum lycoper722007141 (2)gb|KDO51438.1|2e-88hypothetical protein CISIN_1g0090582mg, partial [Citrus sinensis]

Alignment

This contig is upended


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rJMSF028H16+ CT
                      ____________________________________________________________
consensus CT
 
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rJMSF028H16+ ATGGCGCCTCTAAAGATCAATGGAGACAAGAAGTTGTTCGGTACATTCCTGCCTATAGGT
                      ____________________________________________________________
consensus ATGGCGCCTCTAAAGATCAATGGAGACAAGAAGTTGTTCGGTACATTCCTGCCTATAGGT
 
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rJMSF001K15+ ATGTCAAGGGAATATCAATGTTAGCGCGTGACTTGCAGTCCATT
rJMSF028H16+ GATACTGATTCTCCTGATGTCAAGGGAATATCAATGTTAGCGCGTGACTTGCAGTCCATT
                      ____________________________________________________________
consensus GATACTGATTCTCCTGATGTCAAGGGAATATCAATGTTAGCGCGTGACTTGCAGTCCATT
 
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rJMSF001K15+ ATCCTNTATGATAAAGAAGGGAAATTTGTTGGAGTCAGGCGGCCCAACTCTAAGCTTCCG
rJMSF028H16+ ATCCTTTATGATAAAGAAGGGAAATTTGTTGGAGTCAGGCGGCCCAACTCTAAGCTTCCG
                      ____________________________________________________________
consensus ATCCTTTATGATAAAGAAGGGAAATTTGTTGGAGTCAGGCGGCCCAACTCTAAGCTTCCG
 
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rJMSF001K15+ ATTGAGATTGATGGAACCAAAATTCTAATAGTAGATGCAATTGGTAGCACTGGCCTTGAC
rJMSF028H16+ ATTGAGATTGATGGAACCAAAATTCTAATAGTAGATGCAATTGGTAGCACTGGCCTTGAC
                      ____________________________________________________________
consensus ATTGAGATTGATGGAACCAAAATTCTAATAGTAGATGCAATTGGTAGCACTGGCCTTGAC
 
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rJMSF001K15+ CTGAAGAGCGACCCAGGGGTGCCAATCGTGTATGCGGGTTTTGGAGCTTTAATGCTTACG
rJMSF028H16+ CTGAAGAGCGACCCAGGGGTGCCAATCGTGTATGCGGGTTTTGGAGCTTTAATGCTTACG
                      ____________________________________________________________
consensus CTGAAGAGCGACCCAGGGGTGCCAATCGTGTATGCGGGTTTTGGAGCTTTAATGCTTACG
 
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rJMSF001K15+ ACGTTCATCAGCTTCTTGTCACACAGTCAGATATGGGCGTTACAAGATGGAACAATGGTG
rJMSF028H16+ ACGTTCATCAGCTTCTTGTCACACAGTCAGATATGGGCGTTACAAGATGGAACAATGGTG
                      ____________________________________________________________
consensus ACGTTCATCAGCTTCTTGTCACACAGTCAGATATGGGCGTTACAAGATGGAACAATGGTG
 
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rJMSF001K15+ GTTGTGGGAGGAAAGACTAACCGGGCGAAAGGTGAATTTCCAGATGCAATAAGCAGCTTG
rJMSF028H16+ GTTGTGGGAGGAAAGACTAACCGGGCGAAAGGTGAATTTCCAGATGCAATAAGCAGCTTG
                      ____________________________________________________________
consensus GTTGTGGGAGGAAAGACTAACCGGGCGAAAGGTGAATTTCCAGATGCAATAAGCAGCTTG
 
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rJMSF001K15+ CTTGATCAAGTCCCTGAAATAGTTGAATCATCTCCTTCCAAAGAATCAAATGGTCTCAGT
rJMSF028H16+ CTTGATCAAGTCCCTGAAATAGTTGAATCATCTCCTTCCAAAGAATCAAATGGTCTCAGT
                      ____________________________________________________________
consensus CTTGATCAAGTCCCTGAAATAGTTGAATCATCTCCTTCCAAAGAATCAAATGGTCTCAGT
 
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rJMSF001K15+ CTCTGAGGCATTTACTTGGATCAAAGAGTATTACATAACATAGTTCGACTCCACGGATGA
rJMSF028H16+ CTCTGAGGCATTTACTTGGATCAAAGAGTATTACATAACATAGTTCGACTCCACGGATGA
                      ____________________________________________________________
consensus CTCTGAGGCATTTACTTGGATCAAAGAGTATTACATAACATAGTTCGACTCCACGGATGA
 
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rJMSF001K15+ TTCAGTCCGAGGAGAAACCAACACAAGTTGCCAGGAAAACTCTTCAATGATGGTTTGGTT
rJMSF028H16+ TTCAGTCCGAGGAGAAACCAACACAAGTTGCCAGGAAAACTCTTCAATGATGGTTTGGTT
                      ____________________________________________________________
consensus TTCAGTCCGAGGAGAAACCAACACAAGTTGCCAGGAAAACTCTTCAATGATGGTTTGGTT
 
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rJMSF001K15+ AGAACTTATTCCATTGATTCCTTGTAGATCGGATTCAGAGCCTTCCAAGAATCATAAATT
rJMSF028H16+ AGAACTTATTCCATTGATTCCTTGTAGATCGGATTCAGAGCCTTCCAAGAATCATAAATT
                      ____________________________________________________________
consensus AGAACTTATTCCATTGATTCCTTGTAGATCGGATTCAGAGCCTTCCAAGAATCATAAATT
 
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rJMSF001K15+ TCTGCTCTGTAGATATAATTGTACTTGTGTATA-CAGGAGAAAATTCATAGATAC
rJMSF028H16+ TCTGCTCTGTAGATATAATTGTACTTGTGTATACCAGGAGAAAATTCATAGATACCATGA
                      ____________________________________________________________
consensus TCTGCTCTGTAGATATAATTGTACTTGTGTATACCAGGAGAAAATTCATAGATACCATGA