Contig 007137:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006H23Sequence581010154 (4)ref|XP_010262126.1|2e-78PREDICTED: transmembrane 9 superfamily member 4-like [Nelumbo nucifera]817007137 (5)ref|XP_006392684.1|2e-98hypothetical protein EUTSA_v100123151mg, partial [Eutrema salsugineum] gb|ESQ299
JMSF005P15Sequence204010738 (3)355007137 (5)ref|XP_009381175.1|2e-21PREDICTED: transmembrane 9 superfamily member 4-like [Musa acuminata subsp. mal
JMSF027P12Sequence639002262 (11)ref|XP_009609092.1|3e-39PREDICTED: transcription factor bHLH149-like [Nicotiana tomentosiformis]735007137 (5)dbj|BAF00815.1|2e-73putative multispanning membrane protein [Arabidopsis thaliana]
JMSF045O01Sequence713010154 (4)ref|XP_009762751.1|1e-120PREDICTED: transmembrane 9 superfamily member 4-like isoform X1 [Nicotiana sylv772007137 (5)dbj|BAF00815.1|3e-95putative multispanning membrane protein [Arabidopsis thaliana]
JMSF051G20Sequence666010154 (4)ref|XP_009762751.1|6e-101PREDICTED: transmembrane 9 superfamily member 4-like isoform X1 [Nicotiana sylv694007137 (5)dbj|BAF00815.1|1e-90putative multispanning membrane protein [Arabidopsis thaliana]

Alignment

This contig is upended


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rJMSF051G20+                                                            ATTAGTGTTT
rJMSF045O01+                                 TTGTTTGTGGTTTGGGATTTCAGTGCTATTAGTGTTT
rJMFF006H23+           TGGAACCCATGTTTGCGCTAGTTTGTTTGTGGTTTGGGATTTCAGTGCCATTAGTGTTT
                      ____________________________________________________________
consensus              TGGAACCCATGTTTGCGCTAGTTTGTTTGTGGTTTGGGATTTCAGTGCTATTAGTGTTT
 
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rJMSF051G20+          GTGGGTAGCTATTTGGGTTTCAAAAAACCAGCCATTGAAGATCCAGTAAAGACAAACAAG
rJMSF045O01+          GTGGGTAGCTATTTGGGTTTCAAAAAACCAGCCATTGAAGATCCAGTAAAGACAAACAAG
rJMFF006H23+          GTGGGTAGCTATTTGGGTTTCAAAAAACCAGCCATTGAAGATCCAGTAAAGACAAACAAG
rJMSF027P12+                                                       GTAAAGACAACCAAG
                      ____________________________________________________________
consensus             GTGGGTAGCTATTTGGGTTTCAAAAAACCAGCCATTGAAGATCCAGTAAAGACAAACAAG
 
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rJMSF051G20+          ATACCTAGGCAAATACCCGAGCAGACATGGTACATGAAGCCGGCCTTTTCAATTCTTATT
rJMSF045O01+          ATACCTAGGCAAATACCCGAGCAGACATGGTACATGAAGCCGGCCTTTTCAATTCTTATT
rJMFF006H23+          ATACCTAGGCAAATACCCGAGCAGACATGGTACATGAAGCCGGCCTTTTCAATTCTTATT
rJMSF027P12+          ATACCTAGGCAAATACCCGAGCAGACATGGTACATGAAGCCGGCCTTTTCAATTCTTATT
                      ____________________________________________________________
consensus             ATACCTAGGCAAATACCCGAGCAGACATGGTACATGAAGCCGGCCTTTTCAATTCTTATT
 
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rJMSF051G20+          GGTGGCATCCTTCCTTTTGGAGCTGTTTTCATTGAGCTGTTCTTCATCTTGACTTCCATA
rJMSF045O01+          GGTGGCATCCTTCCTTTTGGAGCTGTTTTCATTGAGCTGTTCTTCATCTTGACTTCCATA
rJMFF006H23+          GGTGGCATCCTTCCTTTTGGAGCTGTTTTCATTGAGCTGTTCTTCATCTTGACTTCCATA
rJMSF027P12+          GGTGGCATCCTTCCTTTNGGAGCTGTTTTCATTGAGCTGTTCTTCATCTTGACTTCCATA
                      ____________________________________________________________
consensus             GGTGGCATCCTTCCTTTTGGAGCTGTTTTCATTGAGCTGTTCTTCATCTTGACTTCCATA
 
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rJMSF051G20+          TGGCTTAACCAGTTCTACTACATATTCGGCTTCCTTTTCATAGTCTTCCTCATCCTACTG
rJMSF045O01+          TGGCTTAACCAGTTCTACTACATATTCGGCTTCCTTTTCATAGTCTTCCTCATCCTACTG
rJMFF006H23+          TGGCTTAACCAGTTCTACTACATATTCGGCTTCCTTTTCATAGTCTTCCTCATCCTACTG
rJMSF027P12+          TGGCTTAACCAGTTNTACTACATATTCGGCTTCCTTTTCATAGTCTTCCTCATCCTACTG
                      ____________________________________________________________
consensus             TGGCTTAACCAGTTCTACTACATATTCGGCTTCCTTTTCATAGTCTTCCTCATCCTACTG
 
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rJMSF051G20+          ATCACATGCGCAGAGATATCCGTGGTGCTCTGCTACTTCCAATTGTGCAGCGAGGACTAC
rJMSF045O01+          ATCACATGCGCAGAGATATCCGTGGTGCTCTGCTACTTCCAATTGTGCAGCGAGGACTAC
rJMFF006H23+          ATCACATGCGCAGAGATATCCGTGGTGCTCTGCTACTTCCAATTGTGCAGCGAGGACTAC
rJMSF027P12+          ATCACATGCGCAGAGATATCCGTGGTGCTCTGCTACTTCCAATTGTGCAGCGAGGACTAC
                      ____________________________________________________________
consensus             ATCACATGCGCAGAGATATCCGTGGTGCTCTGCTACTTCCAATTGTGCAGCGAGGACTAC
 
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rJMSF051G20+          AATTGGTGGTGGAGGGCCTATCTCACCGCCGGTTCTTCAGCTCTCTACCTTTTCCTCTAC
rJMSF005P15+                                              TCAGCTCTCTACCTTTTCCTCTAC
rJMSF045O01+          AATTGGTGGTGGAGGGCCTATCTCACCGCCGGTTCTTCAGCTCTCTACCTTTTCCTCTAC
rJMFF006H23+          AATTGGTGGTGGAGGGCCTATCTCACCGCCGGTTCTTCAGCTCTCTACCTTTTCCTCTAC
rJMSF027P12+          AATTGGTGGTGGAGGGCCTATCTCACCGCCGGTTCTTCAGCTCTCTACCTTTTCCTCTAC
                      ____________________________________________________________
consensus             AATTGGTGGTGGAGGGCCTATCTCACCGCCGGTTCTTCAGCTCTCTACCTTTTCCTCTAC
 
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rJMSF051G20+          TCCATTTTCTACTTCTTCACCAAACTGGAAATCACTAAGCTTGTCTCGGGCATTTTATAT
rJMSF005P15+          TCCATTTTCTACTTCTTCACCAAACTGGAAATCACTAAGCTTGTCTCGGGCATTTTATAT
rJMSF045O01+          TCCATTTTCTACTTCTTCACCAAACTGGAAATCACTAAGCTTGTCTCGGGCATTTTATAT
rJMFF006H23+          TCCATTTTCTACTTCTTCACCAAACTGGAAATCACTAAGCTTGTCTCGGGCATTTTATAT
rJMSF027P12+          TCCATTTTCTACTTCTTCACCAAACTGGAAATCACTAAGCTTGTCTCGGGCATTTTATAT
                      ____________________________________________________________
consensus             TCCATTTTCTACTTCTTCACCAAACTGGAAATCACTAAGCTTGTCTCGGGCATTTTATAT
 
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rJMSF051G20+          TTCGGTTATATGTTGATTGCATCATATACCTTCTTTGCATTAACCGGAACAATTGGCTTC
rJMSF005P15+          TTCGGTTATATGTTGATTGCATCATATACCTTCTTTGCATTAACCGGAACAATTGGCTTC
rJMSF045O01+          TTCGGTTATATGTTGATTGCATCATATACCTTCTTTGCATTAACCGGAACAATTGGCTTC
rJMFF006H23+          TTCGGTTATATGTTGATTGCATCATATACCTTCTTTGCATTAACCGGAACAATTGGCTTC
rJMSF027P12+          TTCGGTTATATGTTGATTGCATCATATACCTTCTTTGCATTAACCGGAACAATTGGCTTC
                      ____________________________________________________________
consensus             TTCGGTTATATGTTGATTGCATCATATACCTTCTTTGCATTAACCGGAACAATTGGCTTC
 
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rJMSF051G20+          TACACTTGCTTATGGTTTGTCAGGAAAATCTACAGCTCCGTGAAGATCGACTGATGGTGA
rJMSF005P15+          TACACTTGCTTATGGTTTGTCAGGAAAATCTACAGCTCCGTGAAGATCGACTGATGGTGA
rJMSF045O01+          TACACTTGCTTATGGTTTGTCAGGAAAATCTACAGCTCCGTGAAGATCGACTGATGGTGA
rJMFF006H23+          TACACTTGCTTATGGTTTGTCATGAAAATCTACAGCTCCGTGAAGATCGACTGATGGTGA
rJMSF027P12+          TACACTTGCTTATGGTTTGTCAGGAAAATCTACAGCTCCGTGAAGATCGACTGATGGTGA
                      ____________________________________________________________
consensus             TACACTTGCTTATGGTTTGTCAGGAAAATCTACAGCTCCGTGAAGATCGACTGATGGTGA
 
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rJMSF051G20+          GAAAAAAGCTCAACGGCTTGTTACTATTTGCAGTGATTAGTGATGAAGCTGAGAATTAGA
rJMSF005P15+          GAAAAAAGCTCAACGGCTTGTTACTATTTGCAGTGATTAGTGATGAAGCTGAGAATTAGA
rJMSF045O01+          GAAAAAAGCTCAACGGCTTGTTACTATTTGCAGTGATTAGTGATGAAGCTGAGAATTAGA
rJMFF006H23+          -AAAAAAGCTCAACGGCTTGTTACTATTTGCAGTGATTAGTGATGAAGCTGAGAATTAGA
rJMSF027P12+          GAAAAAAGCTCAACGGCTTGTTACTATTTGCAGTGATTAGTGATGAAGCTGAGAATTAGA
                      ____________________________________________________________
consensus             GAAAAAAGCTCAACGGCTTGTTACTATTTGCAGTGATTAGTGATGAAGCTGAGAATTAGA
 
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rJMSF051G20+          GAAACGTTTAGCTGTCTTTCATTTCAAGTTGTAGTGTATAGCTTCATATTGCATGAGTGT
rJMSF005P15+          GAAACGTTTAGCTGTCTTTCATTTCAAGTTGTAGTGTATAGCTTCATATTGCATGAGTGT
rJMSF045O01+          GAAACGTTTAGCTGTCTTTCATTTCAAGTTGTAGTGTATAGCTTCATATTGCATGAGTGT
rJMFF006H23+          GAAACGTTTAGCTGTCTTTCATTTCAAGTTGTAGTGTATAGCTTCATATTGCATGAGTGT
rJMSF027P12+          GAAACGTTTAGCTGTCTTTCATTTCAAGTTGTAGTGTATAGCTTCATATTGCATGAGTGT
                      ____________________________________________________________
consensus             GAAACGTTTAGCTGTCTTTCATTTCAAGTTGTAGTGTATAGCTTCATATTGCATGAGTGT
 
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rJMSF051G20+          TGTCTCTTCTATCACAGTATA                                       
rJMSF005P15+          TGTCTCTTCTATCACAGTATATGATATATAG                             
rJMSF045O01+          TGTCTCTTCTATCACAGTATATGATATATAGTGTAATAGCTCAAGGCCATATAAAGATAC
rJMFF006H23+          TGTCTCTTCTATCACAGTATATGATATATAGTGTAATAGCTCAAGGCCATATAAAGATAC
rJMSF027P12+          TGTCTCTTCTATCACAGTATATGATATATAGTGTAATAGCTCAAGGCCATATAAAGATAC
                      ____________________________________________________________
consensus             TGTCTCTTCTATCACAGTATATGATATATAGTGTAATAGCTCAAGGCCATATAAAGATAC
 
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rJMSF045O01+          TTT                                                         
rJMFF006H23+          TTT-TATGGATGATTTTACTGTGCTGTAATGTAGTATAAC                    
rJMSF027P12+          TTTCTATGGATGANTTTNCTGTGCTGTAATGTAGTATAACCGCAGGTCTCATTTCATTTC
                      ____________________________________________________________
consensus             TTTCTATGGATGATTTTACTGTGCTGTAATGTAGTATAACCGCAGGTCTCATTTCATTTC