clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF026G04 | Sequence | 641 | 007115 (4) | gb|KDO54698.1| | 2e-98 | hypothetical protein CISIN_1g0027441mg, partial [Citrus sinensis] gb|KDO54699.1| | |||||
JMSF023G07 | Sequence | 679 | 013367 (3) | ref|XP_009627930.1| | 4e-15 | PREDICTED: DNA repair protein RAD16 [Nicotiana tomentosiformis] | 779 | 007115 (4) | ref|XP_011463401.1| | 2e-118 | PREDICTED: ATP-dependent helicase rhp16 isoform X2 [Fragaria vesca subsp. vesca |
JMSF048A17 | Sequence | 675 | 013367 (3) | ref|XP_009627930.1| | 2e-16 | PREDICTED: DNA repair protein RAD16 [Nicotiana tomentosiformis] | 748 | 007115 (4) | ref|XP_011463401.1| | 1e-117 | PREDICTED: ATP-dependent helicase rhp16 isoform X2 [Fragaria vesca subsp. vesca |
JMSF051A21 | Sequence | 612 | 013367 (3) | ref|XP_009627930.1| | 9e-12 | PREDICTED: DNA repair protein RAD16 [Nicotiana tomentosiformis] | 711 | 007115 (4) | ref|XP_011463401.1| | 2e-106 | PREDICTED: ATP-dependent helicase rhp16 isoform X2 [Fragaria vesca subsp. vesca |
This contig is upended
. : . : . : . : . : . :
rJMSF051A21+ TCTAGTATGCCAAAAGTTTCATGCCCTACGTGCTCCAAGC
____________________________________________________________
consensus TCTAGTATGCCAAAAGTTTCATGCCCTACGTGCTCCAAGC
. : . : . : . : . : . :
rJMSF051A21+ CACTCACAGCAGAACTATTAAATAGTAGTGGTANTAGAGATTCAANAAACNGANCACCAN
rJMSF048A17+ CACTCACAGCAGAACTATTAAATAGTAGTGGTAATAGAGATTCAAAAAACAGAACACCAA
rJMSF023G07+ CACTCACAGCAGAACTATTAAATAGTAGTGGTAATAGAGATTCAAAAANCAGAACAACAA
____________________________________________________________
consensus CACTCACAGCAGAACTATTAAATAGTAGTGGTAATAGAGATTCAAAAAACAGAACACCAA
. : . : . : . : . : . :
rJMSF051A21+ TCAAAGGANTTAGGGCCTCGAGTATNCTGAACAGAANTNTGCTCGTNGAATTCCAGACTA
rJMSF048A17+ TCAAAGGATTTAGGGCCTCGAGTATACTGAACAGAATTCTGCTCGCTGAATTCCAGACTA
rJMSF023G07+ TCAAAGGATTTAGGGCCTCGAGTATACTGAACAGAATTCTGCTCGCTGAATTCCAGACTA
____________________________________________________________
consensus TCAAAGGATTTAGGGCCTCGAGTATACTGAACAGAATTCTGCTCGCTGAATTCCAGACTA
. : . : . : . : . : . :
rJMSF051A21+ GTACTAAAATAGATGCCTTGAGGGAAGAAATNAGATTTANGGTTGAAAGAGATGGTTCTG
rJMSF048A17+ GTACTAAAATAGATGCCTTGAGGGAAGAAATTAGATTTATGGTTGAAAGAGATGGTTCTG
rJMFF026G04+ AATAGATGCCTNGAGGGANGAAATTAGATTTATGGNTGAAAGAGATGGTTCTG
rJMSF023G07+ GTACTAAAATAGATGCCTTGAGGGAAGAAATTAGATTTATGGTTGAAAGAGATGGTTCTG
____________________________________________________________
consensus GTACTAAAATAGATGCCTTGAGGGAAGAAATTAGATTTATGGTTGAAAGAGATGGTTCTG
. : . : . : . : . : . :
rJMSF051A21+ CTAANGGAATAGTTTTCAGCCAATTCACAGAATTTTTGGATTTGATACACTATTCTCTTA
rJMSF048A17+ CTAAAGGAATAGTTTTCAGCCAATTCACAGAATTTTTGGATTTGATACACTATTCTCTTA
rJMFF026G04+ CTAAAGGAATAGTTTTCAGCCAATTCACAGAATTTTNGGATTTGATACACTATTCTCTTA
rJMSF023G07+ CTAAAGGAATAGTTTTCAGCCAATTCACAGAATTTTTGGATTTGATACACTATTCTCTTA
____________________________________________________________
consensus CTAAAGGAATAGTTTTCAGCCAATTCACAGAATTTTTGGATTTGATACACTATTCTCTTA
. : . : . : . : . : . :
rJMSF051A21+ TCAAGTCGGGCGTTAATTGTGTTATGTTAATGGGATCANTGAGTATGGCCGCTAGAGAAT
rJMSF048A17+ TCAAGTCGGGCGTTAATTGTGTTATGTTAATGGGATCAATGAGTATGGCCGCTAGAGAAT
rJMFF026G04+ TCAAGTCGGGCGTTAATTGTGTTATGTTAATGGGATCAATGAGTATGGCCGCTAGAGAAT
rJMSF023G07+ TCAAGTCGGGCGTTAATTGTGTTATGTTAATGGGATCAATGAGTATGGCCGCTAGAGAAT
____________________________________________________________
consensus TCAAGTCGGGCGTTAATTGTGTTATGTTAATGGGATCAATGAGTATGGCCGCTAGAGAAT
. : . : . : . : . : . :
rJMSF051A21+ CNGCTATTACTNAATTCACCGACGATCCAGAATGCAGAATATTTCTTATGAGTTTGAAAG
rJMSF048A17+ CTGCTATTACTAAATTCACCGACGATCCAGAATGCAGAATATTTCTTATGAGTTTGAAAG
rJMFF026G04+ CTGCTATTACTAAATTCACCGACGATCCAGAATGCAGAATATTTCTTATGAGTTTGAAAG
rJMSF023G07+ CTGCTATTACTAAATTCACCGACGATCCAGAATGCAGAATATTTCTTATGAGTTTGAAAG
____________________________________________________________
consensus CTGCTATTACTAAATTCACCGACGATCCAGAATGCAGAATATTTCTTATGAGTTTGAAAG
. : . : . : . : . : . :
rJMSF051A21+ CTGGAGGTGTTGCTTTAAATCTGACAGTAGCATCGCATGTTTTCTTGATGGATCCTNGGT
rJMSF048A17+ CTGGAGGTGTTGCTTTAAATCTGACAGTAGCATCGCATGTTTTCTTGATGGATCCTTGGT
rJMFF026G04+ CTGGAGGTGTTGCTTTAAATCTGACAGTAGCATCGCATGTTTTCTTGATGGATCCTTGGT
rJMSF023G07+ CTGGAGGTGTTGCTTTAAATCTGACAGTAGCATCGCATGTTTTCTTGATGGATCCTTGGT
____________________________________________________________
consensus CTGGAGGTGTTGCTTTAAATCTGACAGTAGCATCGCATGTTTTCTTGATGGATCCTTGGT
. : . : . : . : . : . :
rJMSF051A21+ GGAATCCAGCGGTGGAGAGGCAAGCACAAGATAGAATCCATCGGATAGGACAATATAAAC
rJMSF048A17+ GGAATCCAGCGGTGGAGAGGCAAGCACAAGATAGAATCCATCGGATAGGACAATATAAAC
rJMFF026G04+ GGAATCCAGCGGTGGAGAGGCAAGCACAAGATAGAATCCATCGGATAGGACAATATAAAC
rJMSF023G07+ GGAATCCAGCGGTGGAGAGGCAAGCACAAGATAGAATCCATCGGATAGGACAATATAAAC
____________________________________________________________
consensus GGAATCCAGCGGTGGAGAGGCAAGCACAAGATAGAATCCATCGGATAGGACAATATAAAC
. : . : . : . : . : . :
rJMSF051A21+ CTATAAGGATTGTGAGATTTGTGATTGACAACACCATNGAAGAGAGAATCTTGAAGCTGC
rJMSF048A17+ CTATAAGGATTGTGAGATTTGTGATTGACAACACCATTGAAGAGAGAATCTTGAAGCTGC
rJMFF026G04+ CTATAAGGATTGTGAGATTTGTGATTGACAACACCATTGAAGAGAGAATCTTGAAGCTGC
rJMSF023G07+ CTATAAGGATTGTGAGATTTGTGATTGACAACACCATTGAAGAGAGAATCTTGAAGCTGC
____________________________________________________________
consensus CTATAAGGATTGTGAGATTTGTGATTGACAACACCATTGAAGAGAGAATCTTGAAGCTGC
. : . : . : . : . : . :
rJMSF051A21+ AAGAGAAGAAGGAATTAGTTTTTGAAGGGACGGTTGGTGGATCCTTAGACGCACTTGGAA
rJMSF048A17+ AAGAGAAGAAGGAATTAGTTTTTGAAGGGACGGTTGGTGGATCCTTAGACGCACTTGGAA
rJMFF026G04+ AAGAGAAGAAGGAATTAGTTTTTGAAGGGACGGTTGGTGGATCCTTAGACGCACTTGGAA
rJMSF023G07+ AAGAGAAGAAGGAATTAGTTTTTGAAGGGACGGTTGGTGGATCCTTAGACGCACTTGGAA
____________________________________________________________
consensus AAGAGAAGAAGGAATTAGTTTTTGAAGGGACGGTTGGTGGATCCTTAGACGCACTTGGAA
. : . : . : . : . : . :
rJMSF051A21+ AGCTAAGCGGAGGGAGNCTTGAAATTCCTTTTTGTCACTTGAAGCATGCACGCATATGTA
rJMSF048A17+ AGCTAA-CGGAGGGAGACTTGAAATTCCTTTTTGTCACTTGAAGCATGCATGCATATGTA
rJMFF026G04+ AGCTAA-CGGAGGGAGACTTGAAATTCCTTTTTGTCACTTGAAGCATGCATGCATATGTA
rJMSF023G07+ AGCTAA-CGGAGGGAGACTTGAAATTCCTTTTTGTCACTTGAAGCATGCATGCATATGTA
____________________________________________________________
consensus AGCTAA-CGGAGGGAGACTTGAAATTCCTTTTTGTCACTTGAAGCATGCATGCATATGTA
. : . : . : . : . : . :
rJMSF051A21+ ATGT
rJMSF048A17+ ATGTTGTAAAATGTGTTTTTCCCTTACATCTGGAGCATATCATATCTTTTTTGCCATCTG
rJMFF026G04+ ATGTTGTAAAATGTGTTTTTCCCTTACATCTGGAGCATATCATATCTTTTTTGCCATCTG
rJMSF023G07+ ATGTTGTAAAATGTGTTTTTCCCTTACATCTGGAGCATATCATATCTTTTTTGCCATCTG
____________________________________________________________
consensus ATGTTGTAAAATGTGTTTTTCCCTTACATCTGGAGCATATCATATCTTTTTTGCCATCTG
. : . : . : . : . : . :
rJMSF048A17+ TCTCAAGCATATCATTTCTATCAG
rJMFF026G04+ TCTCAAGCATATCATTTCTATCAGTAATCCTAACTCATCTTGATACAAA
rJMSF023G07+ TCTCAAGCATATCATTTCTATCAGTAATCCTAACTCATCTTGATACAAATATAATTGTCC
____________________________________________________________
consensus TCTCAAGCATATCATTTCTATCAGTAATCCTAACTCATCTTGATACAAATATAATTGTCC