Contig 007115:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026G04Sequence641007115 (4)gb|KDO54698.1|2e-98hypothetical protein CISIN_1g0027441mg, partial [Citrus sinensis] gb|KDO54699.1|
JMSF023G07Sequence679013367 (3)ref|XP_009627930.1|4e-15PREDICTED: DNA repair protein RAD16 [Nicotiana tomentosiformis]779007115 (4)ref|XP_011463401.1|2e-118PREDICTED: ATP-dependent helicase rhp16 isoform X2 [Fragaria vesca subsp. vesca
JMSF048A17Sequence675013367 (3)ref|XP_009627930.1|2e-16PREDICTED: DNA repair protein RAD16 [Nicotiana tomentosiformis]748007115 (4)ref|XP_011463401.1|1e-117PREDICTED: ATP-dependent helicase rhp16 isoform X2 [Fragaria vesca subsp. vesca
JMSF051A21Sequence612013367 (3)ref|XP_009627930.1|9e-12PREDICTED: DNA repair protein RAD16 [Nicotiana tomentosiformis]711007115 (4)ref|XP_011463401.1|2e-106PREDICTED: ATP-dependent helicase rhp16 isoform X2 [Fragaria vesca subsp. vesca

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF051A21+ TCTAGTATGCCAAAAGTTTCATGCCCTACGTGCTCCAAGC
                      ____________________________________________________________
consensus TCTAGTATGCCAAAAGTTTCATGCCCTACGTGCTCCAAGC
 
. : . : . : . : . : . :
rJMSF051A21+ CACTCACAGCAGAACTATTAAATAGTAGTGGTANTAGAGATTCAANAAACNGANCACCAN
rJMSF048A17+ CACTCACAGCAGAACTATTAAATAGTAGTGGTAATAGAGATTCAAAAAACAGAACACCAA
rJMSF023G07+ CACTCACAGCAGAACTATTAAATAGTAGTGGTAATAGAGATTCAAAAANCAGAACAACAA
                      ____________________________________________________________
consensus CACTCACAGCAGAACTATTAAATAGTAGTGGTAATAGAGATTCAAAAAACAGAACACCAA
 
. : . : . : . : . : . :
rJMSF051A21+ TCAAAGGANTTAGGGCCTCGAGTATNCTGAACAGAANTNTGCTCGTNGAATTCCAGACTA
rJMSF048A17+ TCAAAGGATTTAGGGCCTCGAGTATACTGAACAGAATTCTGCTCGCTGAATTCCAGACTA
rJMSF023G07+ TCAAAGGATTTAGGGCCTCGAGTATACTGAACAGAATTCTGCTCGCTGAATTCCAGACTA
                      ____________________________________________________________
consensus TCAAAGGATTTAGGGCCTCGAGTATACTGAACAGAATTCTGCTCGCTGAATTCCAGACTA
 
. : . : . : . : . : . :
rJMSF051A21+ GTACTAAAATAGATGCCTTGAGGGAAGAAATNAGATTTANGGTTGAAAGAGATGGTTCTG
rJMSF048A17+ GTACTAAAATAGATGCCTTGAGGGAAGAAATTAGATTTATGGTTGAAAGAGATGGTTCTG
rJMFF026G04+ AATAGATGCCTNGAGGGANGAAATTAGATTTATGGNTGAAAGAGATGGTTCTG
rJMSF023G07+ GTACTAAAATAGATGCCTTGAGGGAAGAAATTAGATTTATGGTTGAAAGAGATGGTTCTG
                      ____________________________________________________________
consensus GTACTAAAATAGATGCCTTGAGGGAAGAAATTAGATTTATGGTTGAAAGAGATGGTTCTG
 
. : . : . : . : . : . :
rJMSF051A21+ CTAANGGAATAGTTTTCAGCCAATTCACAGAATTTTTGGATTTGATACACTATTCTCTTA
rJMSF048A17+ CTAAAGGAATAGTTTTCAGCCAATTCACAGAATTTTTGGATTTGATACACTATTCTCTTA
rJMFF026G04+ CTAAAGGAATAGTTTTCAGCCAATTCACAGAATTTTNGGATTTGATACACTATTCTCTTA
rJMSF023G07+ CTAAAGGAATAGTTTTCAGCCAATTCACAGAATTTTTGGATTTGATACACTATTCTCTTA
                      ____________________________________________________________
consensus CTAAAGGAATAGTTTTCAGCCAATTCACAGAATTTTTGGATTTGATACACTATTCTCTTA
 
. : . : . : . : . : . :
rJMSF051A21+ TCAAGTCGGGCGTTAATTGTGTTATGTTAATGGGATCANTGAGTATGGCCGCTAGAGAAT
rJMSF048A17+ TCAAGTCGGGCGTTAATTGTGTTATGTTAATGGGATCAATGAGTATGGCCGCTAGAGAAT
rJMFF026G04+ TCAAGTCGGGCGTTAATTGTGTTATGTTAATGGGATCAATGAGTATGGCCGCTAGAGAAT
rJMSF023G07+ TCAAGTCGGGCGTTAATTGTGTTATGTTAATGGGATCAATGAGTATGGCCGCTAGAGAAT
                      ____________________________________________________________
consensus TCAAGTCGGGCGTTAATTGTGTTATGTTAATGGGATCAATGAGTATGGCCGCTAGAGAAT
 
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rJMSF051A21+ CNGCTATTACTNAATTCACCGACGATCCAGAATGCAGAATATTTCTTATGAGTTTGAAAG
rJMSF048A17+ CTGCTATTACTAAATTCACCGACGATCCAGAATGCAGAATATTTCTTATGAGTTTGAAAG
rJMFF026G04+ CTGCTATTACTAAATTCACCGACGATCCAGAATGCAGAATATTTCTTATGAGTTTGAAAG
rJMSF023G07+ CTGCTATTACTAAATTCACCGACGATCCAGAATGCAGAATATTTCTTATGAGTTTGAAAG
                      ____________________________________________________________
consensus CTGCTATTACTAAATTCACCGACGATCCAGAATGCAGAATATTTCTTATGAGTTTGAAAG
 
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rJMSF051A21+ CTGGAGGTGTTGCTTTAAATCTGACAGTAGCATCGCATGTTTTCTTGATGGATCCTNGGT
rJMSF048A17+ CTGGAGGTGTTGCTTTAAATCTGACAGTAGCATCGCATGTTTTCTTGATGGATCCTTGGT
rJMFF026G04+ CTGGAGGTGTTGCTTTAAATCTGACAGTAGCATCGCATGTTTTCTTGATGGATCCTTGGT
rJMSF023G07+ CTGGAGGTGTTGCTTTAAATCTGACAGTAGCATCGCATGTTTTCTTGATGGATCCTTGGT
                      ____________________________________________________________
consensus CTGGAGGTGTTGCTTTAAATCTGACAGTAGCATCGCATGTTTTCTTGATGGATCCTTGGT
 
. : . : . : . : . : . :
rJMSF051A21+ GGAATCCAGCGGTGGAGAGGCAAGCACAAGATAGAATCCATCGGATAGGACAATATAAAC
rJMSF048A17+ GGAATCCAGCGGTGGAGAGGCAAGCACAAGATAGAATCCATCGGATAGGACAATATAAAC
rJMFF026G04+ GGAATCCAGCGGTGGAGAGGCAAGCACAAGATAGAATCCATCGGATAGGACAATATAAAC
rJMSF023G07+ GGAATCCAGCGGTGGAGAGGCAAGCACAAGATAGAATCCATCGGATAGGACAATATAAAC
                      ____________________________________________________________
consensus GGAATCCAGCGGTGGAGAGGCAAGCACAAGATAGAATCCATCGGATAGGACAATATAAAC
 
. : . : . : . : . : . :
rJMSF051A21+ CTATAAGGATTGTGAGATTTGTGATTGACAACACCATNGAAGAGAGAATCTTGAAGCTGC
rJMSF048A17+ CTATAAGGATTGTGAGATTTGTGATTGACAACACCATTGAAGAGAGAATCTTGAAGCTGC
rJMFF026G04+ CTATAAGGATTGTGAGATTTGTGATTGACAACACCATTGAAGAGAGAATCTTGAAGCTGC
rJMSF023G07+ CTATAAGGATTGTGAGATTTGTGATTGACAACACCATTGAAGAGAGAATCTTGAAGCTGC
                      ____________________________________________________________
consensus CTATAAGGATTGTGAGATTTGTGATTGACAACACCATTGAAGAGAGAATCTTGAAGCTGC
 
. : . : . : . : . : . :
rJMSF051A21+ AAGAGAAGAAGGAATTAGTTTTTGAAGGGACGGTTGGTGGATCCTTAGACGCACTTGGAA
rJMSF048A17+ AAGAGAAGAAGGAATTAGTTTTTGAAGGGACGGTTGGTGGATCCTTAGACGCACTTGGAA
rJMFF026G04+ AAGAGAAGAAGGAATTAGTTTTTGAAGGGACGGTTGGTGGATCCTTAGACGCACTTGGAA
rJMSF023G07+ AAGAGAAGAAGGAATTAGTTTTTGAAGGGACGGTTGGTGGATCCTTAGACGCACTTGGAA
                      ____________________________________________________________
consensus AAGAGAAGAAGGAATTAGTTTTTGAAGGGACGGTTGGTGGATCCTTAGACGCACTTGGAA
 
. : . : . : . : . : . :
rJMSF051A21+ AGCTAAGCGGAGGGAGNCTTGAAATTCCTTTTTGTCACTTGAAGCATGCACGCATATGTA
rJMSF048A17+ AGCTAA-CGGAGGGAGACTTGAAATTCCTTTTTGTCACTTGAAGCATGCATGCATATGTA
rJMFF026G04+ AGCTAA-CGGAGGGAGACTTGAAATTCCTTTTTGTCACTTGAAGCATGCATGCATATGTA
rJMSF023G07+ AGCTAA-CGGAGGGAGACTTGAAATTCCTTTTTGTCACTTGAAGCATGCATGCATATGTA
                      ____________________________________________________________
consensus AGCTAA-CGGAGGGAGACTTGAAATTCCTTTTTGTCACTTGAAGCATGCATGCATATGTA
 
. : . : . : . : . : . :
rJMSF051A21+ ATGT
rJMSF048A17+ ATGTTGTAAAATGTGTTTTTCCCTTACATCTGGAGCATATCATATCTTTTTTGCCATCTG
rJMFF026G04+ ATGTTGTAAAATGTGTTTTTCCCTTACATCTGGAGCATATCATATCTTTTTTGCCATCTG
rJMSF023G07+ ATGTTGTAAAATGTGTTTTTCCCTTACATCTGGAGCATATCATATCTTTTTTGCCATCTG
                      ____________________________________________________________
consensus ATGTTGTAAAATGTGTTTTTCCCTTACATCTGGAGCATATCATATCTTTTTTGCCATCTG
 
. : . : . : . : . : . :
rJMSF048A17+ TCTCAAGCATATCATTTCTATCAG
rJMFF026G04+ TCTCAAGCATATCATTTCTATCAGTAATCCTAACTCATCTTGATACAAA
rJMSF023G07+ TCTCAAGCATATCATTTCTATCAGTAATCCTAACTCATCTTGATACAAATATAATTGTCC
                      ____________________________________________________________
consensus TCTCAAGCATATCATTTCTATCAGTAATCCTAACTCATCTTGATACAAATATAATTGTCC