Contig 007104:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015H14Sequence101023164759007104 (2)gb|AAG52531.1|AC016662_251e-49unknown protein; 58745-68005 [Arabidopsis thaliana]
JMSF021D09Sequence691022106ref|XP_011089261.1|2e-67PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Sesamum i805007104 (2)ref|XP_010999999.1|2e-43PREDICTED: probable importin-7 homolog isoform X1 [Populus euphratica]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF015H14+ TAACCAAATAAGGCGTGCACGCTGTTGGTTTCCTTGCATGGAT
                      ____________________________________________________________
consensus TAACCAAATAAGGCGTGCACGCTGTTGGTTTCCTTGCATGGAT
 
. : . : . : . : . : . :
rJMSF015H14+ GACAATTTGCAGCGCTGCTGCTATGATTTGGAGTTCACAGTAGCCAGTAATCTTGTTGCA
                      ____________________________________________________________
consensus GACAATTTGCAGCGCTGCTGCTATGATTTGGAGTTCACAGTAGCCAGTAATCTTGTTGCA
 
. : . : . : . : . : . :
rJMSF015H14+ ATTAGCTCTGGGACTTTACTTTATCAGGTCTTGAGCAAAGATGATCCTTCGTGTAAAACA
                      ____________________________________________________________
consensus ATTAGCTCTGGGACTTTACTTTATCAGGTCTTGAGCAAAGATGATCCTTCGTGTAAAACA
 
. : . : . : . : . : . :
rJMSF015H14+ TTTGTCTATAGATTAGACGTTCCTGTTACGGCTGGATGGATATCCTTGACCATAGAGACA
                      ____________________________________________________________
consensus TTTGTCTATAGATTAGACGTTCCTGTTACGGCTGGATGGATATCCTTGACCATAGAGACA
 
. : . : . : . : . : . :
rJMSF015H14+ AGGATTAAACTTGCTTATGCTCTTGCAAGACAATGGTTTGGAGTATATATCACCTCTGAA
                      ____________________________________________________________
consensus AGGATTAAACTTGCTTATGCTCTTGCAAGACAATGGTTTGGAGTATATATCACCTCTGAA
 
. : . : . : . : . : . :
rJMSF015H14+ ACACCAAATGATGATTGGTTGTTGGATGGCCTTGCTGGATTTTTAACCGATACATTTATT
                      ____________________________________________________________
consensus ACACCAAATGATGATTGGTTGTTGGATGGCCTTGCTGGATTTTTAACCGATACATTTATT
 
. : . : . : . : . : . :
rJMSF015H14+ AAGAGATTCCTGGGAAATAATGAAGCACGATATCGGCGGTACAAGATTGTTGATGCTCTT
rJMSF021D09+ GATTGCTGATGCTCTT
                      ____________________________________________________________
consensus AAGAGATTCCTGGGAAATAATGAAGCACGATATCGGCGGTACAAGATTGTTGATGCTCTT
 
. : . : . : . : . : . :
rJMSF015H14+ TACTATAACCCTTCATTTACGCTGAGCATACTGCAAAAGCTTGGTGTTGCTACAGAGATC
rJMSF021D09+ TACTATAACCCTTCATTTACGCTGAGCATACTGCAAAAGCTTGGTGTTGCTACAGAGATC
                      ____________________________________________________________
consensus TACTATAACCCTTCATTTACGCTGAGCATACTGCAAAAGCTTGGTGTTGCTACAGAGATC
 
. : . : . : . : . : . :
rJMSF015H14+ TTCAATCTTTGGTTCCATATGCTACAACAAACTAAAAAAAGTGGAGCTCGGGCTAATTCT
rJMSF021D09+ TTCAATCTTTGGTTCCATATGCTACAACAAACTAAAAAAAGTGGAGCTCGGGCTAATTTT
                      ____________________________________________________________
consensus TTCAATCTTTGGTTCCATATGCTACAACAAACTAAAAAAAGTGGAGCTCGGGCTAATTTT
 
. : . : . : . : . : . :
rJMSF015H14+ AAAAGGGAGCATGAGAAGAAGGTTTCCTACTTGGGCTTGACATCATTGCTCAGTCTTCCT
rJMSF021D09+ AAAAGGGAGCATGAGAAGAAGGTTTACTGCTTGGGCTTGACCTCATTGCTCAGTCTTCCT
                      ____________________________________________________________
consensus AAAAGGGAGCATGAGAAGAAGGTTTCCTGCTTGGGCTTGACCTCATTGCTCAGTCTTCCT
 
. : . : . : . : . : . :
rJMSF015H14+ GC
rJMSF021D09+ GCTGATCAAATGCCAGCAGCAGCCTTAGAGGGCATTTTTAAGGCTATTCTTGATCTCCTT
                      ____________________________________________________________
consensus GCTGATCAAATGCCAGCAGCAGCCTTAGAGGGCATTTTTAAGGCTATTCTTGATCTCCTT
 
. : . : . : . : . : . :
rJMSF021D09+ GTTGCATACAAGGATCAACTTGCTGAAGCTGCAAAGGCTGATGAAGATGAAGATGAGATC
                      ____________________________________________________________
consensus GTTGCATACAAGGATCAACTTGCTGAAGCTGCAAAGGCTGATGAAGATGAAGATGAGATC
 
. : . : . : . : . : . :
rJMSF021D09+ GAGATAGATGGGTTTCAAAGTGACGATGACGAGTCTGATAGAGACATGGCGGATGATGAT
                      ____________________________________________________________
consensus GAGATAGATGGGTTTCAAAGTGACGATGACGAGTCTGATAGAGACATGGCGGATGATGAT
 
. : . : . : . : . : . :
rJMSF021D09+ GAGGACGGAGATGAAGCTGACAGCCTAAAGCTCCAAAAGTTGGCAGCACAGGCGAGTGCT
                      ____________________________________________________________
consensus GAGGACGGAGATGAAGCTGACAGCCTAAAGCTCCAAAAGTTGGCAGCACAGGCGAGTGCT
 
. : . : . : . : . : . :
rJMSF021D09+ TTCCGCGCCATTGATGACGAGGATGACTCGTCTGATGATGATTTCAGTGACGACGAAGAG
                      ____________________________________________________________
consensus TTCCGCGCCATTGATGACGAGGATGACTCGTCTGATGATGATTTCAGTGACGACGAAGAG
 
. : . : . : . : . : . :
rJMSF021D09+ TTGCAGTCACCCATTGATGAGGTGGACCCTATTATTCTCTTCGTTGATTCCATCAAAGAG
                      ____________________________________________________________
consensus TTGCAGTCACCCATTGATGAGGTGGACCCTATTATTCTCTTCGTTGATTCCATCAAAGAG
 
. : . : . : . : . : . :
rJMSF021D09+ TCCCGGAGAAGGTCATGACATCAATGGAGAAACCCCCGTATACAATGCGTGTTTCAAGGA
                      ____________________________________________________________
consensus TCCCGGAGAAGGTCATGACATCAATGGAGAAACCCCCGTATACAATGCGTGTTTCAAGGA
 
. : . : . : . : . : . :
rJMSF021D09+ AGTCAGAACCGGATTACTATTTCGGCCAAGTACTGCCAGTACTCCAGCGAAGACGTGTAT
                      ____________________________________________________________
consensus AGTCAGAACCGGATTACTATTTCGGCCAAGTACTGCCAGTACTCCAGCGAAGACGTGTAT
 
. : . : . : . : . : . :
rJMSF021D09+ GTAGGCGAGCTCGTTTCTGCTATTAGTTCTTTTCCAATGCTCAAGAAAATATATTTTTTG
                      ____________________________________________________________
consensus GTAGGCGAGCTCGTTTCTGCTATTAGTTCTTTTCCAATGCTCAAGAAAATATATTTTTTG
 
. : . : . : . : . : . :
rJMSF021D09+ GCAGGTTTACCTCTTGTAGACAAAATTCATATGTTTTGATGATATTATTGTATTAAAGTA
                      ____________________________________________________________
consensus GCAGGTTTACCTCTTGTAGACAAAATTCATATGTTTTGATGATATTATTGTATTAAAGTA