Contig 007088:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018L15-                      GAAGCAGTGTTTGAGTCGCAGAGCAGTTGCTCAACAAATAACAATGGGA
rJMSF018L15+                     GAAGCAGTGTTTGAGTCGCAGAGCAGTTGCTCAACAAATAACAATGGGA
                      ____________________________________________________________
consensus                        GAAGCAGTGTTTGAGTCGCAGAGCAGTTGCTCAACAAATAACAATGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018L15-           GTCTTGGGCGCCTCAACTTCAAGCTGGCAGATTCCGGCGGGTTTGCCCCTCCCTCCGACT
rJMSF018L15+          GTCTTGGGCGCCTCAACTTCAAGCTGGCAGATTCCGGCGGGTTTGCCCCTCCCTCCGACT
                      ____________________________________________________________
consensus             GTCTTGGGCGCCTCAACTTCAAGCTGGCAGATTCCGGCGGGTTTGCCCCTCCCTCCGACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018L15-           CGTACGGTCTCCTTCTCACCACCACCCCGCAACTATAAAGCATCCTCATTTCTTTCTCCC
rJMSF018L15+          CGTACGGTCTCCTTCTCACCACCACCCCGCAACTATAAAGCATCCTCATTTCTTTCTCCC
                      ____________________________________________________________
consensus             CGTACGGTCTCCTTCTCACCACCACCCCGCAACTATAAAGCATCCTCATTTCTTTCTCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018L15-           ATCTCCACCACAAATCTGAGGTGCGGGCGGTTAGGAAAGTGTTCCTCTATCTCCAAGTCC
rJMSF018L15+          ATCTCCACCACAAATCTGAGGTGCGGGCGGTTAGGAAAGTGTTCCTCTATCTCCAAGTCC
                      ____________________________________________________________
consensus             ATCTCCACCACAAATCTGAGGTGCGGGCGGTTAGGAAAGTGTTCCTCTATCTCCAAGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018L15-           AGGCTCAGGCTCAGGCTCAGGGTGAGCTGCGGAGCAGTAAGGGAGATAACGCAGGAGGAG
rJMSF018L15+          AGGCTCAGGCTCAGGCTCAGGGTGAGCTGCGGAGCAGTAAGGGAGATAACGCAGGAGGAG
                      ____________________________________________________________
consensus             AGGCTCAGGCTCAGGCTCAGGGTGAGCTGCGGAGCAGTAAGGGAGATAACGCAGGAGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018L15-           TTCTCCGACGTAGTTTTGAAGTCCGATCGACCCGTTTTAGTGGAGTTCGTCGCCACTTGG
rJMSF018L15+          TTCTCCGACGTAGTTTTGAAGTCCGATCGACCCGTTTTAGTGGAGTTCGTCGCCACTTGG
                      ____________________________________________________________
consensus             TTCTCCGACGTAGTTTTGAAGTCCGATCGACCCGTTTTAGTGGAGTTCGTCGCCACTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018L15-           TGCGGCCCCTGCCGCTTGATTGCTCCTGCTATAGAATCCATCGCTCAGGAACAAGAGTAT
rJMSF018L15+          TGCGGCCCCTGCCGCTTGATTGCTCCTGCTATAGAATCCATCGCTCAGGAACAAGAGTAT
                      ____________________________________________________________
consensus             TGCGGCCCCTGCCGCTTGATTGCTCCTGCTATAGAATCCATCGCTCAGGAACAAGAGTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018L15-           AGGGAAAAGATAACAGTGGTTAAGATTGATCATGATTCAAATCCTCAGCTGATCGAAGAG
rJMSF018L15+          AGGGAAAAGATAACAGTGGTTAAGATTGATCATGATTCAAATCCTCAGCTGATCGAAGAG
                      ____________________________________________________________
consensus             AGGGAAAAGATAACAGTGGTTAAGATTGATCATGATTCAAATCCTCAGCTGATCGAAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018L15-           TACAAAGTTTACGGATTGCCAACTTTGATTCTCTT                         
rJMSF018L15+          TACAAAGTTTACGGATTGCCAACTTTGATTCTCTTCAAAGATGGAAAGGTAGTAGAAGAG
                      ____________________________________________________________
consensus             TACAAAGTTTACGGATTGCCAACTTTGATTCTCTTCAAAGATGGAAAGGTAGTAGAAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018L15+          AGCAGAAGGGAAGGCGCAATAACAAAAGTTAAGCTCAAGAAGCATCTTGACGGTCTTCTG
                      ____________________________________________________________
consensus             AGCAGAAGGGAAGGCGCAATAACAAAAGTTAAGCTCAAGAAGCATCTTGACGGTCTTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018L15+          GAGAGTATCTGTGCTGTGTAATCTTCAGCTACCAGATTTTGCTTTTTAGCTATTTCATTT
                      ____________________________________________________________
consensus             GAGAGTATCTGTGCTGTGTAATCTTCAGCTACCAGATTTTGCTTTTTAGCTATTTCATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018L15+          CATTATATCATACCACTGAAAATGTAATTTGGAAATCATGTTTTTGTGCCCATATTAATT
                      ____________________________________________________________
consensus             CATTATATCATACCACTGAAAATGTAATTTGGAAATCATGTTTTTGTGCCCATATTAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018L15+          TCTGATAAAGCCAAGCCTGTAATTTATGTTCTCGTTTCATTAAGCCATGCCCAGTGCATA
                      ____________________________________________________________
consensus             TCTGATAAAGCCAAGCCTGTAATTTATGTTCTCGTTTCATTAAGCCATGCCCAGTGCATA