Contig 007066:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001I10Sequence484009251 (2)ref|XP_007210228.1|2e-34hypothetical protein PRUPE_ppa015539mg [Prunus persica] gb|EMJ11427.1| hypotheti726007066 (2)ref|XP_006470496.1|130PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
JMSF013A22Sequence483009251 (2)gb|ABD33126.2|7e-43RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula]784007066 (2)ref|XP_006470496.1|138PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF013A22+ GGAA
                      ____________________________________________________________
consensus GGAA
 
. : . : . : . : . : . :
rJMSF001I10+ TTCAAC
rJMSF013A22+ AGCATATCTCACGTTCTTGCNGGCTGCAAAATCGCTAAGGAGGCGTGGACTTACTTCAAC
                      ____________________________________________________________
consensus AGCATATCTCACGTTCTTGCNGGCTGCAAAATCGCTAAGGAGGCGTGGACTTACTTCAAC
 
. : . : . : . : . : . :
rJMSF001I10+ AGTCAGCTGAACACTACGGAAGACCACAACGCCTCGACCTGGTTCATGAAGATTATCCGA
rJMSF013A22+ AGTCAGCTGAACACTACGGAAGACCACAACGCCTCGACCTGGTTCATTAAGATTATCCGA
                      ____________________________________________________________
consensus AGTCAGCTGAACACTACGGAAGACCACAACGCCTCGACCTGGTTCATTAAGATTATCCGA
 
. : . : . : . : . : . :
rJMSF001I10+ CAACTCCGCAAAGATCAAATATGCAGCTTTGTCATGATTTGTTGGAACTTGTGGTTAGCA
rJMSF013A22+ CAACTCCGCAAAGATCAAATATGCAGCTTTGTCATGATTTGTTGGAACTTGTGGTTAGCA
                      ____________________________________________________________
consensus CAACTCCGCAAAGATCAAATATGCAGCTTTGTCATGATTTGTTGGAACTTGTGGTTAGCA
 
. : . : . : . : . : . :
rJMSF001I10+ CGTAATGAAAAAATATGGAATCAGGTCTCAACCACAGGCAGGAATATTGTGGAGAAAACC
rJMSF013A22+ CGTAATGAAAAAATATGGAATCAGGTCTCAACCACAGGCAGGAATATTGTGGAGAAAACC
                      ____________________________________________________________
consensus CGTAATGAAAAAATATGGAATCAGGTCTCAACCACAGGCAGGAATATTGTGGAGAAAACC
 
. : . : . : . : . : . :
rJMSF001I10+ AGAGCTTTCCTTCTTGATTGGAATCGGGTGCATGCTAAACATTCCAACCGACCTGCTTAC
rJMSF013A22+ AGAGCTTTCCTTCTTGATTGGAATCGGGTGCATGCTAAACATTCCAACCGACCTGCTTAC
                      ____________________________________________________________
consensus AGAGCTTTCCTTCTTGATTGGAATCGGGTGCATGCTAAACATTCCAACCGACCTGCTTAC
 
. : . : . : . : . : . :
rJMSF001I10+ ATCTCAGGTACTACTCACTGGTCCAGACCCCCCGCTGGTTTTCTTAAGCTAAACATTGAT
rJMSF013A22+ ATCTCAGATACTACTCACTGGTCCAGACCCCCCGCTGGTTTTCTTAAGCTAAACATTGAT
                      ____________________________________________________________
consensus ATCTCAGGTACTACTCACTGGTCCAGACCCCCCGCTGGTTTTCTTAAGCTAAACATTGAT
 
. : . : . : . : . : . :
rJMSF001I10+ GCTGCTCTTAATCCAAGCATGGGAAGATTGGGCTTTGGCTGGATTCTTCGCGATCATCAT
rJMSF013A22+ GCTGCTCTTAATCCAAGCATGGGAAGATTGGGCTTTGGCTGGATTCTTCGCGATCATCAT
                      ____________________________________________________________
consensus GCTGCTCTTAATCCAAGCATGGGAAGATTGGGCTTTGGCTGGATTCTTCGCGATCATCAT
 
. : . : . : . : . : . :
rJMSF001I10+ GGGTCCTTCATCGCTGCCTCTAACTTCTCCAAAATCGGCTACTGCTCCCCTAAAGAAGCC
rJMSF013A22+ GGGTCCTTCATCGCTGCCTCTAACTTCTCCAAAATCGGCTACTGCTCCCCTAAAGAAGCC
                      ____________________________________________________________
consensus GGGTCCTTCATCGCTGCCTCTAACTTCTCCAAAATCGGCTACTGCTCCCCTAAAGAAGCC
 
. : . : . : . : . : . :
rJMSF001I10+ GAGGCCATCGCAGTTCGTGAAGCCCTCTCATGGCTAAAGCAGCAAAACTTCTCCAAAGTC
rJMSF013A22+ GAGGCCATCGCAGTTCGTGAAGCCCTCTCATGGCTAAAGCAGCAAAACTTCTCCAAAGTC
                      ____________________________________________________________
consensus GAGGCCATCGCAGTTCGTGAAGCCCTCTCATGGCTAAAGCAGCAAAACTTCTCCAAAGTC
 
. : . : . : . : . : . :
rJMSF001I10+ CTTGTTGAAACTGATGCTCTTTCTGTGGTTCAAGGTCTACATGCTGATAATCATACTTCC
rJMSF013A22+ CTTGTTGAAACTGATGCTCTTTCTGTGGTTCAAGGTCTACATGCTGATAATCATACTTCC
                      ____________________________________________________________
consensus CTTGTTGAAACTGATGCTCTTTCTGTGGTTCAAGGTCTACATGCTGATAATCATACTTCC
 
. : . : . : . : . : . :
rJMSF001I10+ TCTTTTGATCTTGTTTTACTTGACATTAAAGATTTACTAAGTCTTTTAGACGATGTTACA
rJMSF013A22+ TCTTTTGATCTTGTTTTACTTGACATTAAAGATTTACTAAGTCTTTTAGACGATGTTACA
                      ____________________________________________________________
consensus TCTTTTGATCTTGTTTTACTTGACATTAAAGATTTACTAAGTCTTTTAGACGATGTTACA
 
. : . : . : . : . : . :
rJMSF001I10+ ATCTCGTTTGTTAAACGCTCTGCGAATGGAGTTGCTCATACGCTAGCTAGAGACTCCATC
rJMSF013A22+ ATCTCGTTTGTTAAACGCTCTGCGAATGGAGTTGCTCATACGCTAGCTAGAGACTCCATC
                      ____________________________________________________________
consensus ATCTCGTTTGTTAAACGCTCTGCGAATGGAGTTGCTCATACGCTAGCTAGAGACTCCATC
 
. : . : . : . : . : . :
rJMSF001I10+ TCTAATGCAGACCGTAGGGACTGGTTCTCAGAACCGCCTTCTTTTATTTGTA
rJMSF013A22+ TCTAATGCAGACCGTAGGGACTGGTTCTCAGAACCGCCTTCTTTTATTTGTAACTCTGCT
                      ____________________________________________________________
consensus TCTAATGCAGACCGTAGGGACTGGTTCTCAGAACCGCCTTCTTTTATTTGTAACTCTGCT