Contig 007062:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF011H24+                                                     GTAGTCATTCTGGNTTA
                      ____________________________________________________________
consensus                                                        GTAGTCATTCTGGNTTA
 
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rJMSF011H24+          ACCAANGAAGGGATAAGATGTTTCGAGAGGATGTTATCGGAGCACGAGATCAAACCAACG
                      ____________________________________________________________
consensus             ACCAANGAAGGGATAAGATGTTTCGAGAGGATGTTATCGGAGCACGAGATCAAACCAACG
 
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JMSF012H21-                   TTACGGGTGCATGGTAGATCTCCTGGGAAATGCAGGCTTCCTAGATGAAGCT
rJMSF011H24+          GTTCAGCATTACGGGTGCATGGTAGATCTCCTGGGAAATGCAGGCTTCCTAGATGAAGCT
                      ____________________________________________________________
consensus             GTTCAGCATTACGGGTGCATGGTAGATCTCCTGGGAAATGCAGGCTTCCTAGATGAAGCT
 
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JMSF012H21-           TTCGAGCTAATCAACACCATACCTATCGAGCCAAACGACGTTCTGTGGCGTAGCCTGCTA
rJMSF011H24+          TTCGAGCTAATCAACACCATACCTATCGAGCCAAACGACGTTCTGTGGCGTAGCCTGCTA
rJMSF012H21+                                                           GTAGCCTGCTA
                      ____________________________________________________________
consensus             TTCGAGCTAATCAACACCATACCTATCGAGCCAAACGACGTTCTGTGGCGTAGCCTGCTA
 
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JMSF012H21-           AGTGCATGCAGAGCTCACCAGAACGTCGAGTTGGGGGAAGTTGCAGCAAAGAATCTGTTC
rJMSF011H24+          AGTGCATGCAGAGCTCACCAGAACGTCGAGTTGGGGGAAGTTGCAGCAAAGAATCTGTTC
rJMSF012H21+          AGTGCATGCAGAGCTCACCAGAACGTCGAGTTGGGGGAAGNTGCAGCAAAGAATCTGTTC
                      ____________________________________________________________
consensus             AGTGCATGCAGAGCTCACCAGAACGTCGAGTTGGGGGAAGTTGCAGCAAAGAATCTGTTC
 
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JMSF012H21-           GAGCTAAAGCCACAGAACCCTAGTGACTATCTGATGCTATCGAATATGTATGCAAAAGCT
rJMSF011H24+          GAGCTAAAGCCACAGAACCCTAGTGACTATCTGATGCTATCGAATATGTATGCAAAAGCT
rJMSF012H21+          GAGCTAAAGCCACAGAACCCTAGTGACTATCTGATGCTATCGAATATGTATGCAAAAGCT
                      ____________________________________________________________
consensus             GAGCTAAAGCCACAGAACCCTAGTGACTATCTGATGCTATCGAATATGTATGCAAAAGCT
 
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JMSF012H21-           CAGAGATGGCAAGAAATGGCTATGATTCGAACCGAAATGGCTAACAAGGGTCTAAAACAA
rJMSF011H24+          CAGAGATGGCAAGAAATGGCTATGATTCGAACCGAAATGGCTAACAAGGGTCTAAAACAA
rJMSF012G21+                                                          GGTCTAAAACAA
rJMSF012H21+          CAGAGATGGCAAGAAATGGCTATGATTCGAACCGAAATGGCTAACAAGGGTCTAAAACAA
                      ____________________________________________________________
consensus             CAGAGATGGCAAGAAATGGCTATGATTCGAACCGAAATGGCTAACAAGGGTCTAAAACAA
 
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JMSF012H21-           GAACCCGGCTCTTGCACGGTTGAGGTAAACCGAAAGGTCTACAAGTTTGTATCACAAGAT
rJMSF011H24+          GAACCCGGCTCTTGCACGGTTGAGGTAAACCGAAAGGTCTACAAGTTTGTATCACAAGAT
rJMSF012G21+          GAACCCGGCTCTTGCACGGTTGAGGTAAACCGAAAGGTCTNCAAGTTTGTATCACAAGAT
rJMSF012H21+          GAACCCGGCTCTTGCACGGTTGAGGTAAACCGAAAGGTCTACAAGTTTGTATCACAAGAT
                      ____________________________________________________________
consensus             GAACCCGGCTCTTGCACGGTTGAGGTAAACCGAAAGGTCTACAAGTTTGTATCACAAGAT
 
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JMSF012H21-           ATGTCTTATCCCCAGTGCGAGGGCGTCTATGAAATGCTTCACCAGATGGAGTGGCAACTG
rJMSF011H24+          ATGTCTTATCCCCAGTGCGAGGGCGTCTATGAAATGCTTCACCAGATGGAGTGGCAACTG
rJMSF012G21+          ATGTCTTATCCCCAGTGCGAGGGNGTCTATGAAATGCTTCACCAGATGGAGTGGCANCTG
rJMSF012H21+          ATGTCTTATCCCCAGTGCGAGGGCGTCTATGAAATGCTTCACCAGATGGAGTGGCAACTG
                      ____________________________________________________________
consensus             ATGTCTTATCCCCAGTGCGAGGGCGTCTATGAAATGCTTCACCAGATGGAGTGGCAACTG
 
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JMSF012H21-           AA                                                          
rJMSF011H24+          AAATTCGAAGGCTACTCACCCGATACATCACAGGTATTGATGGACGTTGACGAAGAAGAG
rJMSF012G21+          AAATTCGAAGGCTACTCACCCGATACATCACAGGTATNGATGGACGTTGACGAAGAAGAG
rJMSF012H21+          AAATTCGAAGGCTACTCACCCGATACATCACAGGTATTGATGGACGTTGACGAAGAAGAG
                      ____________________________________________________________
consensus             AAATTCGAAGGCTACTCACCCGATACATCACAGGTATTGATGGACGTTGACGAAGAAGAG
 
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rJMSF011H24+          AAGAGGCAGAGACTCGGTAATCACAGCCAAAAGCTGGCCATTGCGTTTGCGCTAATACAC
rJMSF012G21+          AAGAGGCAGAGACTCGGTAATCACAGCCAAAAGCTGGCCATTGCGTTTGCGNTAATACAC
rJMSF012H21+          AAGAGGCAGAGACTCGGTAATCACAGCCAAAAGCTGGCCATTGCGTTTGCGCTAATACAC
                      ____________________________________________________________
consensus             AAGAGGCAGAGACTCGGTAATCACAGCCAAAAGCTGGCCATTGCGTTTGCGCTAATACAC
 
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rJMSF011H24+          ACATCGCAGGGATCATCTGTAAGGATCGTAAGAAACGTGAGAATGTGTAGCGATTGTCAC
rJMSF012G21+          ACATCGCAGGGATCATCTGTAAGGATNGTAAGAAACGTGAGAATGNGTAGCGATTGTCAC
rJMSF012H21+          ACATCGCAGGGATCATCTGTAAGGATCGTAAGAAACGTGAGAATGTGTAGCGATTGTCAC
                      ____________________________________________________________
consensus             ACATCGCAGGGATCATCTGTAAGGATCGTAAGAAACGTGAGAATGTGTAGCGATTGTCAC
 
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rJMSF011H24+          ACGTACACTAAATTTATTTCTACAATCTATGAAAGAGAAATCGTTGTTAGAGATCGGAAT
rJMSF012G21+          ACGTACANTAAATTTATTTNTACAATCTATGAAAGAGAAATNGTTGTTAGAGATCGGAAT
rJMSF012H21+          ACGTACACTAAATTTATTTCTACAATCTATGAAAGAGAAATCGTTGTTAGAGATCGGAAT
                      ____________________________________________________________
consensus             ACGTACACTAAATTTATTTCTACAATCTATGAAAGAGAAATCGTTGTTAGAGATCGGAAT
 
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rJMSF011H24+          CGATTTCACCATTTTAAAGATGGATCT                                 
rJMSF012G21+          CGATTTCACCATNTTAAAGATGGATCTTGTTCATGTAGAGATTANTGGNGAATATATATA
rJMSF012H21+          CGATTTCACCATTTTAAAGATGGATCTTGTTCATGTAGAGATTACTGGTGAATATATATA
                      ____________________________________________________________
consensus             CGATTTCACCATTTTAAAGATGGATCTTGTTCATGTAGAGATTACTGGTGAATATATATA
 
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rJMSF012G21+          ATCTCTCTTTGCTTAAAGAACTTGTGCCCCTTTCTTTTTTTTGTNGCCTAAAGGTATCCC
rJMSF012H21+          ATCTCTCTTTGTTTAAAGAACTTGTGCCCCTTTCTTTTTTTTGTTGCCTAAAGGTATCCC
                      ____________________________________________________________
consensus             ATCTCTCTTTGTTTAAAGAACTTGTGCCCCTTTCTTTTTTTTGTTGCCTAAAGGTATCCC
 
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rJMSF012G21+          TCCAGCTATCAGAGCTAATCCCCCGTCCCTACTGTCAGCACACTAATGTGGTAGGGGATG
rJMSF012H21+          TCCAGCTATCAGA-CTAATCCCCCGTCCCTACTGTCAGCACACTAA-GTGGTAGGGGATG
                      ____________________________________________________________
consensus             TCCAGCTATCAGAGCTAATCCCCCGTCCCTACTGTCAGCACACTAATGTGGTAGGGGATG
 
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rJMSF012G21+          CNTAAGGGACAAGGTGCTGAACCACTAGCGCCAAGCCANGTTGGTTAATCTTGTGCCCCT
rJMSF012H21+          CTTAAGGGACAAGGTGCTGAACCACTA-CGCCAAGCCANGTTGGTTAACCTTGTGCCCCT
                      ____________________________________________________________
consensus             CTTAAGGGACAAGGTGCTGAACCACTAGCGCCAAGCCANGTTGGTTAATCTTGTGCCCCT