Contig 007047:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035G15Sequence578002088 (5)gb|AFU50380.1|9e-82chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform 709007047 (4)gb|AFU50382.1|1e-105chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform
JMSF006G23Sequence251002088 (5)gb|AFU50380.1|4e-11chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform 205007047 (4)gb|AFU50382.1|4e-35chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform
JMSF010E22Sequence310002088 (5)gb|AFU50380.1|1e-15chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform 751007047 (4)gb|AFU50382.1|4e-123chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform
JMSF039B03Sequence637002088 (5)gb|AFU50380.1|4e-98chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform 856007047 (4)gb|AFU50382.1|9e-145chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform

Alignment

This contig is upended


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rJMSF039B03+ CACTTATGAACCATTGGCTGATAACCCAACCCAATGTCCAG
                      ____________________________________________________________
consensus CACTTATGAACCATTGGCTGATAACCCAACCCAATGTCCAG
 
. : . : . : . : . : . :
rJMSF039B03+ CTCCCCCGGCATGTACAACAAGCAGGAGAATGCCCGCGTCCCCATCATAGTCACCGGCAA
                      ____________________________________________________________
consensus CTCCCCCGGCATGTACAACAAGCAGGAGAATGCCCGCGTCCCCATCATAGTCACCGGCAA
 
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rJMSF039B03+ TGACTTCTCCACCCTCTATGCTCCTCTCATCCGTGACGGCCGTATGGAGAAGTTCTACTG
rJMSF010E22+ TCCGTGACGGCCGTATGGAGAAGTTNTACTG
                      ____________________________________________________________
consensus TGACTTCTCCACCCTCTATGCTCCTCTCATCCGTGACGGCCGTATGGAGAAGTTCTACTG
 
. : . : . : . : . : . :
rJMSF039B03+ GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
rJMSF010E22+ GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
                      ____________________________________________________________
consensus GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
 
. : . : . : . : . : . :
rJMSF039B03+ ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
rJMSF010E22+ ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
                      ____________________________________________________________
consensus ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
 
. : . : . : . : . : . :
rJMSF039B03+ TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
rJMSF010E22+ TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
                      ____________________________________________________________
consensus TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
 
. : . : . : . : . : . :
rJMSF039B03+ TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
rJMFF035G15+ CA
rJMSF010E22+ TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
                      ____________________________________________________________
consensus TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
 
. : . : . : . : . : . :
rJMSF039B03+ GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
rJMFF035G15+ GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
rJMSF010E22+ GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
                      ____________________________________________________________
consensus GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
 
. : . : . : . : . : . :
rJMSF039B03+ GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
rJMSF006G23+ AATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCNTTGGAGATGC
rJMFF035G15+ GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
rJMSF010E22+ GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
                      ____________________________________________________________
consensus GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
 
. : . : . : . : . : . :
rJMSF039B03+ AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMSF006G23+ AAACGAAGATTCAATCAAGANTGGAAACTTNTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMFF035G15+ AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMSF010E22+ AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
                      ____________________________________________________________
consensus AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
 
. : . : . : . : . : . :
rJMSF039B03+ TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMSF006G23+ TAAGGTTCCTGAAGGNTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMFF035G15+ TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMSF010E22+ TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
                      ____________________________________________________________
consensus TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
 
. : . : . : . : . : . :
rJMSF039B03+ CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
rJMSF006G23+ CGATGATGGAACCTGCACGTACCAGG
rJMFF035G15+ CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
rJMSF010E22+ CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
                      ____________________________________________________________
consensus CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
 
. : . : . : . : . : . :
rJMSF039B03+ GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
rJMFF035G15+ GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
rJMSF010E22+ GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
                      ____________________________________________________________
consensus GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
 
. : . : . : . : . : . :
rJMSF039B03+ GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
rJMFF035G15+ GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
rJMSF010E22+ GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
                      ____________________________________________________________
consensus GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
 
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rJMSF039B03+ TAGAAGCTAAAGATTTGTCTTTTATGGACAAAAT
rJMFF035G15+ TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAA
rJMSF010E22+ TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAATGAAAGGGTTGGGT
                      ____________________________________________________________
consensus TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAATGAAAGGGTTGGGT