Contig 007043:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF009M01-                         GGAGCTGAAGTCTTCCGCTTCGCCCGAAAATCTGCCGCCGAGGTAT
JMSF038K23-              GGCTAGAGCTCGGAGCTGAAGTCTTCCGCTTCGCCCGAAAATCTGCCGCCGAGGTAT
                      ____________________________________________________________
consensus                GGCTAGAGCTCGGAGCTGAAGTCTTCCGCTTCGCCCGAAAATCTGCCGCCGAGGTAT
 
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JMSF009M01-           CGTAACTTGCTAGGTTGATTGTGGTGGACGCACTGTAGTTGAGGCATCAATGGGAGATGA
JMSF038K23-           CGTAACTTGCTAGGTTGATTGTGGTGGACGCACTGTAGTTGAGGCATCAATGGGAGATGA
                      ____________________________________________________________
consensus             CGTAACTTGCTAGGTTGATTGTGGTGGACGCACTGTAGTTGAGGCATCAATGGGAGATGA
 
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JMSF009M01-           AAAGGATGCCTTTTATGTGGTTCGAAAAGGTGACGTTATTGGTGTCTACAAGAGCTTAAG
JMSF038K23-           AAAGGATGCCTTTTATGTGGTTCGAAAAGGTGACGTTATTGGTGTCTACAAGAGCTTAAG
                      ____________________________________________________________
consensus             AAAGGATGCCTTTTATGTGGTTCGAAAAGGTGACGTTATTGGTGTCTACAAGAGCTTAAG
 
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JMSF009M01-           TGATCTCCAAGCTCTACTTCGATCCTGTGTTGGTGATCCTCAAATAAGTGTTTTTAAAGG
JMSF038K23-           TGATCTCCAAGCTCTATTTCGATCCTGTGTTGGTGATCCTCAAATAAGTGTTTTTAAAGG
rJMSF038K23+                                                 TCAAATAAGTGTTTTTAAAGG
                      ____________________________________________________________
consensus             TGATCTCCAAGCTCTATTTCGATCCTGTGTTGGTGATCCTCAAATAAGTGTTTTTAAAGG
 
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JMSF009M01-           GTACCGCCTTG-CCAAAGAATCTGAAGAGTATTTAGCCTCTCATGGGCTCAAAAGTGCAA
JMSF038K23-           GTACCGCCTTG-CCAAAGAATCTGAAGAGTATTTAGCCTCTCATGGGCTCAAAAGTGCAA
rJMSF038K23+          GTACCGCCNTGCCCAAAGAATCTGAAGAGTATTTAGCCTCTCATGGGCTCAAAAGTGCAA
                      ____________________________________________________________
consensus             GTACCGCCTTG-CCAAAGAATCTGAAGAGTATTTAGCCTCTCATGGGCTCAAAAGTGCAA
 
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JMSF009M01-           TGTACTCTATTGACACAAGTGATGTGCGAGATGATCTCTTTGGCATACTTGTTCCTTGCC
JMSF038K23-           TGTACTCTATTGACACAAGTGATGTGCGAGATGATCTCTTTGGCATACTTGTTCCTTGCC
rJMSF038K23+          TGTACTCTATTGACACAAGTGATGTGCGAGATGATCTCTTTGGCATACTTGTTCCTTGCC
                      ____________________________________________________________
consensus             TGTACTCTATTGACACAAGTGATGTGCGAGATGATCTCTTTGGCATACTTGTTCCTTGCC
 
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JMSF009M01-           CTTTCCGG                                                    
JMSF038K23-           CTTTCCGGCAACCAGGTTCTTCCAAAGATAAACCTCTCTGCAAGAATGTTCATGAGAAAC
rJMSF038K23+          CTTTCCGGCAACCAGGTTCTTCCAAAGATAAACCTCTCTGCAAGAATGTTCATGAGAAAC
rJMSF009M01+                                 AAAGATAAACCTCTNTGCAAGAATGTTCATGAGAAAC
                      ____________________________________________________________
consensus             CTTTCCGGCAACCAGGTTCTTCCAAAGATAAACCTCTCTGCAAGAATGTTCATGAGAAAC
 
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JMSF038K23-           GGCTGCAGGAAATGGCTGGATCTGCTTCATTTTCTGCAGCTAATCAGCAGAAGCATGCGA
rJMSF038K23+          GGCTGCAGGAAATGGCTGGATCTGCTTCATTTTCTGCAGCTAATCAGCAGAAGCATGCGA
rJMSF009M01+          GGCTGCAGGAAATGGCTGGATCTGCTTCATTTTCTGCAGCTAATCAGCAGAAGCATGCGA
                      ____________________________________________________________
consensus             GGCTGCAGGAAATGGCTGGATCTGCTTCATTTTCTGCAGCTAATCAGCAGAAGCATGCGA
 
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JMSF038K23-           AATTAGATAACTTTCTTGAAGTCCCATCGGTTTCTTCTTATTGTGTTTCCTGCATTCTTG
rJMSF038K23+          AATTAGATAACTTTCTTGAAGTCCCATCGGTTTCTTCTTATTGTGTTTCCTGCATTCTTG
rJMSF009M01+          AATTAGATAACTTTCTTGAAGTCCCATCGGTTTCTTCTTATTGTGTTTCCTGCATTCTTG
                      ____________________________________________________________
consensus             AATTAGATAACTTTCTTGAAGTCCCATCGGTTTCTTCTTATTGTGTTTCCTGCATTCTTG
 
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JMSF038K23-           AGTTTGATGGTGCTTCAAAGGGAAATCCTGGACTAGCTGGTGCAGGGGCTGTGCTCCGTG
rJMSF038K23+          AGTTTGATGGTGCTTCAAAGGGAAATCCTGGACTAGCTGGTGCAGGGGCTGTGCTCCGTG
rJMSF009M01+          AGTTTGATGGTGCTTCAAAGGGAAATCCTGGACTAGCTGGTGCAGGGGCTGTGCTCCGTG
                      ____________________________________________________________
consensus             AGTTTGATGGTGCTTCAAAGGGAAATCCTGGACTAGCTGGTGCAGGGGCTGTGCTCCGTG
 
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JMSF038K23-           CTGCAGATGGAAGTATTGTTTTTAGGTTGCGTGAAG                        
rJMSF038K23+          CTGCAGATGGAAGTATTGTTTTTAGGTTGCGTGAAGGTGTGGGTGTTGCAACAAACAATG
rJMSF009M01+          CTGCAGATGGAAGTATTGTTTTTAGGTTGCGTGAAGGTGTGGGTGTTGCAACAAACAATG
                      ____________________________________________________________
consensus             CTGCAGATGGAAGTATTGTTTTTAGGTTGCGTGAAGGTGTGGGTGTTGCAACAAACAATG
 
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rJMSF038K23+          CTGCTGAGTATAGAGGTGTAATATTAGGGTTGAAGTATGCTCTTGAGAAAGGCTTTAAAC
rJMSF009M01+          CTGCTGAGTATAGAGGTGTAATATTAGGGTTGAAGTATGCTCTTGAGAAAGGCTTTAAAC
                      ____________________________________________________________
consensus             CTGCTGAGTATAGAGGTGTAATATTAGGGTTGAAGTATGCTCTTGAGAAAGGCTTTAAAC
 
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rJMSF038K23+          ACATACGTGTCCAAGGAGACTCAAAGCTTGTCTGTATGCAGACTCAAGGAATTTGGAGAA
rJMSF009M01+          ACATACGTGTCCAAGGAGACTCAAAGCTTGTCTGTATGCAGACTCAAGGAATTTGGAGAA
                      ____________________________________________________________
consensus             ACATACGTGTCCAAGGAGACTCAAAGCTTGTCTGTATGCAGACTCAAGGAATTTGGAGAA
 
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rJMSF038K23+          CCAAGAACCAGAACATGGCTGAACTGTCTAAGGTGGTCAAAGAGCTAAAGAATCAATTTA
rJMSF009M01+          CCAAGAACCAGAACATGGCTGAACTGTCTAAGGTGGTCAAAGAGCTAAAGAATCAATTTA
                      ____________________________________________________________
consensus             CCAAGAACCAGAACATGGCTGAACTGTCTAAGGTGGTCAAAGAGCTAAAGAATCAATTTA
 
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rJMSF038K23+          TGTCTTTCCAGATCAACCATGTTGAGAGAGAATACAACACCGAAGCCGATGCCCTGGCCA
rJMSF009M01+          TGTCTTTCCAGATCAACCATGTTGAGAGAGAATACAACACCGAAGCCGATGCCCTGGCCA
                      ____________________________________________________________
consensus             TGTCTTTCCAGATCAACCATGTTGAGAGAGAATACAACACCGAAGCCGATGCCCTGGCCA
 
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rJMSF038K23+          ATCTTGCAGTTTATCTGAAGAATGGCGAAA                              
rJMSF009M01+          ATCTTGCAGTTTATCTGAAGAATGGCGAAATTCAAGTGGAATATGACGTGAAGTAGGCGA
                      ____________________________________________________________
consensus             ATCTTGCAGTTTATCTGAAGAATGGCGAAATTCAAGTGGAATATGACGTGAAGTAGGCGA
 
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rJMSF009M01+          ATGCAATTATGCAAAGCCCTCTCATCCAGTATCAAGTTTATGGACTCTGAGAGGATTGTC
                      ____________________________________________________________
consensus             ATGCAATTATGCAAAGCCCTCTCATCCAGTATCAAGTTTATGGACTCTGAGAGGATTGTC
 
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rJMSF009M01+          CCTCACACTTTCACACACAATGTCATCCGATCAAATGTAGATACATGGTTTGTGATGTCT
                      ____________________________________________________________
consensus             CCTCACACTTTCACACACAATGTCATCCGATCAAATGTAGATACATGGTTTGTGATGTCT
 
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rJMSF009M01+          GTAACCTAATTTGAGGATGCTTGTCTTTAGGGATTCTTAAACTGACCACCTGTAGGTAGT
                      ____________________________________________________________
consensus             GTAACCTAATTTGAGGATGCTTGTCTTTAGGGATTCTTAAACTGACCACCTGTAGGTAGT