Contig 007013:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002D01Sequence345000549 (2)ref|XP_009767378.1|1e-17PREDICTED: growth-regulating factor 1-like [Nicotiana sylvestris]733007013 (2)ref|XP_009596803.1|6e-30PREDICTED: growth-regulating factor 1-like [Nicotiana tomentosiformis]
JMSF012M19Sequence465000549 (2)ref|XP_009767378.1|2e-50PREDICTED: growth-regulating factor 1-like [Nicotiana sylvestris]715007013 (2)ref|XP_009596803.1|2e-29PREDICTED: growth-regulating factor 1-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF012M19+                                                                  AAAT
rJMSF002D01+                                                         TTATTCTAGAAAT
                      ____________________________________________________________
consensus                                                            TTATTCTAGAAAT
 
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rJMSF012M19+          AATGGGTATGGGCATGGAATGAAGGATGAAGTGGATGAGCATGTGTTTTTCTCATCAGAG
rJMSF002D01+          AATGGGTATGGGCATGGAATGAAGGATGAAGTGGATGAGCATGTGTTTTTCTCATCAGAG
                      ____________________________________________________________
consensus             AATGGGTATGGGCATGGAATGAAGGATGAAGTGGATGAGCATGTGTTTTTCTCATCAGAG
 
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rJMSF012M19+          GGTTCTGGGAGTATAAGAAGTAGTATATCTGGTTCAAATAATTTAGCAGATGATAGTGCT
rJMSF002D01+          GGTTCTGGGAGTATAAGAAGTAGTATATCTGGTTCAAATAATTTAGCAGATGATAGTGCT
                      ____________________________________________________________
consensus             GGTTCTGGGAGTATAAGAAGTAGTATATCTGGTTCAAATAATTTAGCAGATGATAGTGCT
 
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rJMSF012M19+          TGGCAGCTGGCTCCACTGACAATGGCTTCACCACCCTTAGGGCAGTTGAAACAGAGGGAT
rJMSF002D01+          TGGCAGCTGGCTCCACTGACAATGGCTTCACCACCCTTAGGGCAGTTGAAACAGAGGGAT
                      ____________________________________________________________
consensus             TGGCAGCTGGCTCCACTGACAATGGCTTCACCACCCTTAGGGCAGTTGAAACAGAGGGAT
 
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rJMSF012M19+          TATTGTGGTCCTCAGAATGGGTACTCAGCTTCTTATTTGCACCTTCATGAAGCCTCAAGA
rJMSF002D01+          TATTGTGGTCCTCAGAATGGGTACTCAGCTTCTTATTTGCACCTTCATGAAGCCTCAAGA
                      ____________________________________________________________
consensus             TATTGTGGTCCTCAGAATGGGTACTCAGCTTCTTATTTGCACCTTCATGAAGCCTCAAGA
 
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rJMSF012M19+          CAGCAAAGACAAGGAGGAGGAGGAGGAGAAGAAGATGAAGAAGGAGAAGAGTATTATGGC
rJMSF002D01+          CAGCAAAGACAAGGAGGAGGAGGAGGAGAAGAAGATGAAGAAGGAGAAGAGTATTATGGC
                      ____________________________________________________________
consensus             CAGCAAAGACAAGGAGGAGGAGGAGGAGAAGAAGATGAAGAAGGAGAAGAGTATTATGGC
 
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rJMSF012M19+          CTGGGGGGAAGTGGTGGCAGCAAGACAGTAGGTGTGGGCATGATGAACCCAGAAGATCAG
rJMSF002D01+          CTGGGGGGAAGTGGTGGCAGCAAGACAGTAGGTGTGGGCATGATGAACCCAGAAGATCAG
                      ____________________________________________________________
consensus             CTGGGGGGAAGTGGTGGCAGCAAGACAGTAGGTGTGGGCATGATGAACCCAGAAGATCAG
 
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rJMSF012M19+          CAGCCCAAGAAAGTGATGCACCATTTCTTTGATGAGTGGCCTAAAGAAAACAAAGATTCA
rJMSF002D01+          CAGCCCAAGAAAGTGATGCACCATTTCTTTGATGAGTGGCCTAAAGAAAACAAAGATTCA
                      ____________________________________________________________
consensus             CAGCCCAAGAAAGTGATGCACCATTTCTTTGATGAGTGGCCTAAAGAAAACAAAGATTCA
 
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rJMSF012M19+          TGGCTTGATTCTGGGGATGGGGATAAATACTCAGCACCCCGTGGGCCCCACCTCTCAATT
rJMSF002D01+          TGGCTTGATTCTGGGGATGGGGATAAATACTCAGCACCCCGTGGGCCCCACCTCTCAATT
                      ____________________________________________________________
consensus             TGGCTTGATTCTGGGGATGGGGATAAATACTCAGCACCCCGTGGGCCCCACCTCTCAATT
 
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rJMSF012M19+          TCTGTCCCCAATTCATCTCATGACTTCTTCATCACCCACAATGGTGAAAAATGAGAGAGG
rJMSF002D01+          TCTGTCCCCAATTCATCTCATGACTTCTTCATCACCCACAATGGTGAAAAATGAGAGAGG
                      ____________________________________________________________
consensus             TCTGTCCCCAATTCATCTCATGACTTCTTCATCACCCACAATGGTGAAAAATGAGAGAGG
 
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rJMSF012M19+          TTTGAATAGTGGCATTCTGAATCAAAGGCCAAAAGAGTACTTAAAATTGTGGTGGGACAG
rJMSF002D01+          TTTGAATAGTGGCATTCTGAATCAAAGGCCAAAAGAGTACTTAAAATTGTGGTGGGACAG
                      ____________________________________________________________
consensus             TTTGAATAGTGGCATTCTGAATCAAAGGCCAAAAGAGTACTTAAAATTGTGGTGGGACAG
 
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rJMSF012M19+          TGGTTTTACTGATCAAGCTTTTCAGTATACATGTGTAATGTGGTTTCTGAGACACAACTG
rJMSF002D01+          TGGTTTTACTGATCAAGCTTTTCAGTATACATGTGTAATGTGGTTTCTGAGACACAACTG
                      ____________________________________________________________
consensus             TGGTTTTACTGATCAAGCTTTTCAGTATACATGTGTAATGTGGTTTCTGAGACACAACTG
 
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rJMSF012M19+          TTATTTCTCTTGCTTTTGTAATATACACTAC                             
rJMSF002D01+          TTATTTCTCTTGCTTTTGTAATATACACTACCTTATATTACCAAGTTTGTATGTCCTGGT
                      ____________________________________________________________
consensus             TTATTTCTCTTGCTTTTGTAATATACACTACCTTATATTACCAAGTTTGTATGTCCTGGT