Contig 007006:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005H11Sequence502005274 (39)gb|AGV22109.1|2e-53cellulose synthase 7 [Betula luminifera]735007006 (4)gb|AGC97433.2|9e-87cellulose synthase [Boehmeria nivea]
JMFF019I05Sequence607005274 (39)ref|XP_010648652.1|9e-74PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Vitis vinife655007006 (4)gb|AAO25536.1|2e-72cellulose synthase [Populus tremuloides]
JMFF028C17Sequence556005274 (39)ref|XP_010648652.1|4e-85PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Vitis vinife580007006 (4)gb|AGC97433.2|1e-60cellulose synthase [Boehmeria nivea]
JMFF051G11Sequence637005274 (39)emb|CBI21020.3|1e-97unnamed protein product [Vitis vinifera]536007006 (4)ref|XP_002515536.1|7e-28Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus commu

Alignment

This contig is upended


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rJMFF005H11+                                                         GGTGTTCCAGGGG
                      ____________________________________________________________
consensus                                                            GGTGTTCCAGGGG
 
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rJMFF005H11+          CTCTTGAAAGTGCTTGCTGGGATCGACACCAATTTCACCGTCACCTCAAAGGCATCCGAC
                      ____________________________________________________________
consensus             CTCTTGAAAGTGCTTGCTGGGATCGACACCAATTTCACCGTCACCTCAAAGGCATCCGAC
 
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rJMFF028C17+                                                    TCGCTCCTCATTCCCCCG
rJMFF019I05+                            GAGCTCTACGTTTTCAAGTGGACTTCGCTCCTCATTCCCCCG
rJMFF005H11+          GAAGACGGGGAGTTTCAAGAGCTCTACGTTTTCAAGTGGACTTCGCTCCTCATTCCCCCA
                      ____________________________________________________________
consensus             GAAGACGGGGAGTTTCAAGAGCTCTACGTTTTCAAGTGGACTTCGCTCCTCATTCCCCCG
 
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rJMFF028C17+          ACCACCGTCCTTATAGTGAACCTGGTGGGTATAGTCGCGGGAGTTTCGTTCGCCATAAAC
rJMFF019I05+          ACCACCGTCCTTATAGTGAACCTGGTGGGTATAGTCGCGGGAGTTTCGTTCGCCATAAAC
rJMFF005H11+          ACCACCGTCCTTATAGTGAACCTGGTGGGTATAGTCGCGGGAGTTTCGTTCGCCATAAAC
                      ____________________________________________________________
consensus             ACCACCGTCCTTATAGTGAACCTGGTGGGTATAGTCGCGGGAGTTTCGTTCGCCATAAAC
 
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rJMFF028C17+          AGCGGGTATCAGTCGTGGGGTCCTCTGTTTGGGAGGCTGTTCTTCGCCATTTGGGTCATT
rJMFF019I05+          AGCGGGTATCAGTCGTGGGGTCCTCTGTTTGGGAGGCTGTTCTTCGCCATTTGGGTCATT
rJMFF005H11+          AGCGGGTATCAGTCGTGGGGTCCTCTGTTTGGGAGGCTGTTCTTCGCCATTTGGGTCATT
                      ____________________________________________________________
consensus             AGCGGGTATCAGTCGTGGGGTCCTCTGTTTGGGAGGCTGTTCTTCGCCATTTGGGTCATT
 
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rJMFF028C17+          GTCCACTTGTACCCTTTCCTCAAAGGTCTGCTGGGCAGGCAGAACCGCACGCCCACCATC
rJMFF019I05+          GTCCACTTGTACCCTTTCCTCAAAGGTCTGCTGGGCAGGCAGAACCGCACGCCCACCATC
rJMFF005H11+          GTCCACTTGTACCCTTTCCTCAAAGGTCTGCTGGGCAGGCAGAACCGCACGCCCACCATC
rJMFF051G11+              ACTTGTACCCTTTCCTCAAAGGTCTGCTGGGCAGGCAGAACCGCACGCCCACCATC
                      ____________________________________________________________
consensus             GTCCACTTGTACCCTTTCCTCAAAGGTCTGCTGGGCAGGCAGAACCGCACGCCCACCATC
 
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rJMFF028C17+          GTCATCGTCTGGTCCATCCTCCTCGCTTCCATCTTCTCGTTGCTGTGGGTCCGCATCGAC
rJMFF019I05+          GTCATCGTCTGGTCCATCCTCCTCGCTTCCATCTTCTCGTTGCTGTGGGTCCGCATCGAC
rJMFF005H11+          GTCATCGTCTGGTCCATCCTCCTCGCTTCCATCTTCTCGTTGCTGTGGGTCCGCATCGAC
rJMFF051G11+          GTCATCGTCTGGTCCATCCTCCTCGCTTCCATCTTCTCGTTGCTGTGGGTCCGCATCGAC
                      ____________________________________________________________
consensus             GTCATCGTCTGGTCCATCCTCCTCGCTTCCATCTTCTCGTTGCTGTGGGTCCGCATCGAC
 
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rJMFF028C17+          CCCTTCACGTCAGACAGCGCAAAAGCCGCCGCCAGAGGTCAGTGTGGCATCAACTGCTAA
rJMFF019I05+          CCCTTCACGTCAGACAGCGCAAAAGCCGCCGCCAGAGGTCAGTGTGGCATCAACTGCTAA
rJMFF005H11+          CCCTTCACGTCAGACAGCGCAAAAGCCGCCGCCAGAGGTCAGTGTGGCATCAACTGCTAA
rJMFF051G11+          CCCTTCACGTCAGACAGCGCAAAAGCCGCCGCCAGAGGTCAGTGTGGCATCAACTGCTAA
                      ____________________________________________________________
consensus             CCCTTCACGTCAGACAGCGCAAAAGCCGCCGCCAGAGGTCAGTGTGGCATCAACTGCTAA
 
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rJMFF028C17+          ACGGGTTTTGTTTTGTATTTATTTAGATCAAGAAAAAGCTCCATGGCCAGAAAGTTTCAG
rJMFF019I05+          ACGGGTTTTGTTTTGTATTTATTTAGATCAAGAAAAAGCTCCATGGCCAGAAAGTTTCAG
rJMFF005H11+          ACGGGTTTTGTTTTGTATTTATTTAGATCAAGAAAAAGCTCCATGGCCAGAAAGTTTCAG
rJMFF051G11+          ACGGGTTTTGTTTTGTATTTATTTAGATCAAGAAAAAGCTCCATGGCCAGAAAGTTTCAG
                      ____________________________________________________________
consensus             ACGGGTTTTGTTTTGTATTTATTTAGATCAAGAAAAAGCTCCATGGCCAGAAAGTTTCAG
 
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rJMFF028C17+          TTACCGGCTTTGCGTAAATAGAAGAAGAAGAAGAAAGTGTTATTGTAAAATGGAGAAGTG
rJMFF019I05+          TTACCGGCTTTGCGTAAATAGAAGAAGAAGAAGAAAGTGTTATTGTAAAATGGAGAAGTG
rJMFF005H11+          TTACCGGCTTTGCGTAAATAGAAGAAGAAGAAGAAAGTGTTATTGTAAAATGGAGAAGTG
rJMFF051G11+          TTACCGGCTTTGCGTAAATAGAAGAAGAAGAAGAAAGTGTTATTGTAAAATGGAGAAGTG
                      ____________________________________________________________
consensus             TTACCGGCTTTGCGTAAATAGAAGAAGAAGAAGAAAGTGTTATTGTAAAATGGAGAAGTG
 
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rJMFF028C17+          GAGGTGTTGTTGTACTTTGTGGTCTCAACTGCATAATTCTTTTGTTGATATATACTTCTG
rJMFF019I05+          GAGGTGTTGTTGTACTTTGTGGTCTCAACTGCATAATTCTTTTGTTGATATATACTTCTG
rJMFF005H11+          GAGGTGTTGTTGTACTTTGTGGTCTCAACTGCATAATTCTTTTGTTGATATATACTTCTG
rJMFF051G11+          GAGGTGTTGTTGTACTTTGTGGTCTCAACTGCATAATTCTTTTGTTGATATATACTTCTG
                      ____________________________________________________________
consensus             GAGGTGTTGTTGTACTTTGTGGTCTCAACTGCATAATTCTTTTGTTGATATATACTTCTG
 
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rJMFF028C17+          GGGAGAAAGCCTTAATTAATGTAATAGATTATATATTGTTAGTGTGCAGTGTTCTTACAC
rJMFF019I05+          GGGAGAAAGCCTTAATTAATGTAATAGATTATATATTGTTAGTGTGCAGTGTTCTTACAC
rJMFF005H11+          GGGAGAAAGCCTTAATTAATGTAATAGATTATATATTGTTAGTGTGCAGTGTTCTTACAC
rJMFF051G11+          GGGAGAAAGCCTTAATTAATGTAATAGATTATATATTGTTAGTGTGCAGTGTTCTTACAC
                      ____________________________________________________________
consensus             GGGAGAAAGCCTTAATTAATGTAATAGATTATATATTGTTAGTGTGCAGTGTTCTTACAC
 
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rJMFF028C17+          AATGTTGTTAAAACAATACATG                                      
rJMFF019I05+          AATGTTGTTAAAACAATACATGTATGAACCCAACCTTTCA                    
rJMFF005H11+          AATGTTGTTAAAACAATACATGTATGAACCCAACCTTTCATGGCTGCCTGCTTTCATAG 
rJMFF051G11+          AATGTTGTTAAAACAATACATGTATGAACCCAACCTTTCATGGCTGCCTGCTTTCATAGT
                      ____________________________________________________________
consensus             AATGTTGTTAAAACAATACATGTATGAACCCAACCTTTCATGGCTGCCTGCTTTCATAGT
 
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rJMFF051G11+          GAAACCATTTTGTGCAACAAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             GAAACCATTTTGTGCAACAAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG