| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF050P06 | Sequence | 630 | 005104 (3) | ref|XP_006355305.1| | 2e-42 | PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum] | 591 | 007002 (3) | ref|XP_009623297.1| | 3e-57 | PREDICTED: RNA polymerase sigma factor sigC isoform X2 [Nicotiana tomentosiform |
| JMSF025B24 | Sequence | 604 | 005104 (3) | ref|XP_009623296.1| | 7e-41 | PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Nicotiana tomentosiform | 734 | 007002 (3) | ref|XP_009623297.1| | 7e-91 | PREDICTED: RNA polymerase sigma factor sigC isoform X2 [Nicotiana tomentosiform |
| JMSF044G16 | Sequence | 797 | 005104 (3) | ref|XP_006355305.1| | 6e-51 | PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum] | 723 | 007002 (3) | ref|XP_006355305.1| | 3e-63 | PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF025B24+ TCTAGTTCAGGTTGGCAGTTTCG
rJMSF044G16+ TTTCG
____________________________________________________________
consensus TCTAGTTCAGGTTGGCAGTTTCG
. : . : . : . : . : . :
rJMSF025B24+ GTGTCCTACAAGGTGCAGTGAGA-TTTGACCACACCAGGGGGTACCAATTCTCAACATAT
rJMSF044G16+ GTGTCCTACAAGGTGCAGTGAGATTTTGACCACACCAGGGGGTACCAATTCTCAACATAT
____________________________________________________________
consensus GTGTCCTACAAGGTGCAGTGAGATTTTGACCACACCAGGGGGTACCAATTCTCAACATAT
. : . : . : . : . : . :
rJMSF025B24+ GTCCAGTATTGGATTAAGAAATCAATGTCCATGTTGGTAGCACTCCATGCTAGAGGGATT
rJMSF044G16+ GTCCAGTATTGGATTAAGAAATCAATGTCCATGTTGGTAGCACTCCATGCTAGAGGGATT
____________________________________________________________
consensus GTCCAGTATTGGATTAAGAAATCAATGTCCATGTTGGTAGCACTCCATGCTAGAGGGATT
. : . : . : . : . : . :
rJMSF025B24+ CGCGTTCCTTTCACAATAATTAAAGTCATCAAAAAAATTCAAAAAGCTAAAAAGGCTCTG
rJMSF044G16+ CGCGTTCCTTTCACAATAATTAAAGTCATCAAAAAAATTCAAAAAGCTAAAAAGGCTCTG
____________________________________________________________
consensus CGCGTTCCTTTCACAATAATTAAAGTCATCAAAAAAATTCAAAAAGCTAAAAAGGCTCTG
. : . : . : . : . : . :
rJMSF025B24+ AGTAGCCGCCATGGTAAGTTTCCGAGTGAGAGTGAAATTGCCAAGTTCACCGGTCTATCT
rJMSF044G16+ AGTAGCCGCCATGGTAAGTTTCCGAGTGAGAGTGAAATTGCCAAGTTCACCGGTCTATCT
rJMFF050P06+ CATGGTAAGTTTCCGAGTGAGAGTGAAATTGCCAAGTTCACCGGTCTATCT
____________________________________________________________
consensus AGTAGCCGCCATGGTAAGTTTCCGAGTGAGAGTGAAATTGCCAAGTTCACCGGTCTATCT
. : . : . : . : . : . :
rJMSF025B24+ ACCAACAGAATTGTGTTAGCTAGCAAATGTCTGAGAGTTGTGGGGTCGATCGATCAGAAA
rJMSF044G16+ ACCAACAGAATTGTGTTAGCTAGCAAATGTCTGAGAGTTGTGGGGTCGATCGATCAGAAA
rJMFF050P06+ ACCAACAGAATTGTGTTAGCTAGCAAATGTCTGAGAGTTGTGGGGTCGATCGATCAGAAA
____________________________________________________________
consensus ACCAACAGAATTGTGTTAGCTAGCAAATGTCTGAGAGTTGTGGGGTCGATCGATCAGAAA
. : . : . : . : . : . :
rJMSF025B24+ CTGGGAGATTTTATGAGTGCCAAATTTGTGGAGTGTACACCGGACAAATCTGTGATCAGT
rJMSF044G16+ CTGGGAGATTTTATGAGTGCCAAATTTGTGGAGTGTACACCGGACAAATCTGTGATCAGT
rJMFF050P06+ CTGGGAGATTTTATGAGTGCCAAATTTGTGGAGTGTACACCGGACAAATCTGTGATCAGT
____________________________________________________________
consensus CTGGGAGATTTTATGAGTGCCAAATTTGTGGAGTGTACACCGGACAAATCTGTGATCAGT
. : . : . : . : . : . :
rJMSF025B24+ CCAGAAGAAGCTGTTATAAGGCAGCACAAGATTAACAACGTTTATTCTCTTCTAAAAGGC
rJMSF044G16+ CCAGAAGAAGCTGTTATAAGGCAGCACAAGATTAACAACGTTTATTCTCTTCTAAAAGGC
rJMFF050P06+ CCAGAAGAAGCTGTTATAAGGCAGCACAAGATTAACAACGTTTATTCTCTTCTAAAAGGC
____________________________________________________________
consensus CCAGAAGAAGCTGTTATAAGGCAGCACAAGATTAACAACGTTTATTCTCTTCTAAAAGGC
. : . : . : . : . : . :
rJMSF025B24+ CTGGAGCCCAAAGAGAGGGATATATTAGTCCTTAGATTTGGTCTCGTAAACAACCAGCGC
rJMSF044G16+ CTGGAGCCCAAAGAGAGGG--ATATTAGTCCTTAGATTTGGTCTCGTAAACAACCAGCGC
rJMFF050P06+ CTGGAGCCCAAAGAGAGGGATATATTAGTCCTTAGATTTGGTCTCGTAAACAACCAGCGC
____________________________________________________________
consensus CTGGAGCCCAAAGAGAGGGATATATTAGTCCTTAGATTTGGTCTCGTAAACAACCAGCGC
. : . : . : . : . : . :
rJMSF025B24+ AAGTCACTAGAGGAGATCGGAAGGCTTCACGGTGTAAGCAAAGAATGGATCAGAAGAGTC
rJMSF044G16+ AAGTCACTAGAGGAGATCGGAAGGCTTCACGGTGTAAGCAAAGAATGGATCAGAAGAGTC
rJMFF050P06+ AAGTCACTAGAGGAGATCGGAAGGCTTCACGGTGTAAGCAAAGAATGGATCAGAAGAGTC
____________________________________________________________
consensus AAGTCACTAGAGGAGATCGGAAGGCTTCACGGTGTAAGCAAAGAATGGATCAGAAGAGTC
. : . : . : . : . : . :
rJMSF025B24+ GAGAGCCGAGCCCTCACGAAACTAAGAAACAAAAGCTCTCTTCAAGATTTAAGGTATTTT
rJMSF044G16+ GAGAGCCGAGCCCTCACGAAACTAAGAAACAAAAGCTCTCTTCAAGATTTAAGGTATTTT
rJMFF050P06+ GAGAGCCGAGCCCTCACGAAACTAAGAAACAAAAGCTCTCTTCAAGATTTAAGGTATTTT
____________________________________________________________
consensus GAGAGCCGAGCCCTCACGAAACTAAGAAACAAAAGCTCTCTTCAAGATTTAAGGTATTTT
. : . : . : . : . : . :
rJMSF025B24+ TTACATTCGTAGTTGACAACCATCCATACACCCGTTAAGTATGATATTCACGTATGTATA
rJMSF044G16+ TTACATTCGTAGTTGACAACCATCCATACACCCGTTAAGTATGATATTCACGTATGTATA
rJMFF050P06+ TTACATTCGTAGTTGACAACCATCCATACACCCGTTAAGTATGATATTCACGTATGTATA
____________________________________________________________
consensus TTACATTCGTAGTTGACAACCATCCATACACCCGTTAAGTATGATATTCACGTATGTATA
. : . : . : . : . : . :
rJMSF025B24+ TCGCAATTTGGATTTTCCACCATGTAAGTATTACATAGCATTGAAGTCATTG
rJMSF044G16+ TCGCAATTTGGATTTTCCACCATGTAAGTATTACATAGCATTGAAGTCATTGTGACATT
rJMFF050P06+ TCGCAATTTGGATTTTCCACCATGTAAGTATTACATAGCATTGAAGTCATTGTGACATTT
____________________________________________________________
consensus TCGCAATTTGGATTTTCCACCATGTAAGTATTACATAGCATTGAAGTCATTGTGACATTT
. : . : . : . : . : . :
rJMFF050P06+ ACACCTGAAAAAAATATAGAGACCATTTCTTCTGCTGTCAATGATCATTTCTTTCGGTAC
____________________________________________________________
consensus ACACCTGAAAAAAATATAGAGACCATTTCTTCTGCTGTCAATGATCATTTCTTTCGGTAC