Contig 006971:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002F09Sequence579001777 (4)ref|XP_009603108.1|1e-65PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento758006971 (3)ref|NP_001234428.1|3e-87signal recognition particle 54 kDa protein 2 [Solanum lycopersicum] sp|P49972.1|
JMFF046H09Sequence594001777 (4)ref|XP_009603108.1|2e-42PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento442006971 (3)
JMSF008E23Sequence390001777 (4)ref|XP_009603108.1|2e-30PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento786006971 (3)ref|NP_001234428.1|2e-91signal recognition particle 54 kDa protein 2 [Solanum lycopersicum] sp|P49972.1|

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF002F09+ TTAAAATGGGTCCCATTGGGCAGGTCT
rJMSF008E23+ ACAATTCCAAAATATACTTAAAATGGGTCCCATTGGGCAGGTCT
                      ____________________________________________________________
consensus ACAATTCCAAAATATACTTAAAATGGGTCCCATTGGGCAGGTCT
 
. : . : . : . : . : . :
rJMFF002F09+ TCTCTATGCTTCCGGGATTTAGTCAAGAACTAATGCCAAAAGGGCGTGAGAAGGAAAGCC
rJMSF008E23+ TCTNTATGCTTCCGGGATTTAGTCAAGAACTAATGCCAAAAGGGCGTGAGAAGGAAAGCC
                      ____________________________________________________________
consensus TCTCTATGCTTCCGGGATTTAGTCAAGAACTAATGCCAAAAGGGCGTGAGAAGGAAAGCC
 
. : . : . : . : . : . :
rJMFF002F09+ AGACAAAAATTAAACGTTATATGACAATGATGGATTCGATGACGAATGAAGAATTGGACA
rJMSF008E23+ AGACAAAAATTAAACGTTATATGACAATGATGGATTCGATGACGAATGAAGAATTGGACA
                      ____________________________________________________________
consensus AGACAAAAATTAAACGTTATATGACAATGATGGATTCGATGACGAATGAAGAATTGGACA
 
. : . : . : . : . : . :
rJMFF002F09+ GCACAAACCCGAAGCTTATGACTGAATCGCGCATCATGAGGATAGCAAGGGGATCTGGTC
rJMSF008E23+ GCACAAACCCGAAGCTTATGACTGAATCGCGCATCATGAGGATAGCAAGGGGATCTGGTC
                      ____________________________________________________________
consensus GCACAAACCCGAAGCTTATGACTGAATCGCGCATCATGAGGATAGCAAGGGGATCTGGTC
 
. : . : . : . : . : . :
rJMFF002F09+ GTTTGGTGCATGAAGTGATGGAAATGATGGAAGAGTACAAGCGATTGGCCAAGATATGGA
rJMSF008E23+ GTTTGGTGCATGAAGTGATGGAAATGATGGAAGAGTACAAGCGATTGGCCAAGATATGGA
                      ____________________________________________________________
consensus GTTTGGTGCATGAAGTGATGGAAATGATGGAAGAGTACAAGCGATTGGCCAAGATATGGA
 
. : . : . : . : . : . :
rJMFF002F09+ GCAAGATGAAGGGACTTAAAATCCCAAAGAAGGGAGATATGAGTGCCTTGTCCCGAAACA
rJMSF008E23+ GCAAGATGAAGGGACTTAAAATCCCAAAGAAGGGAGATATGAGTGCCTTGTCCCGAAACA
                      ____________________________________________________________
consensus GCAAGATGAAGGGACTTAAAATCCCAAAGAAGGGAGATATGAGTGCCTTGTCCCGAAACA
 
. : . : . : . : . : . :
rJMFF002F09+ TGAATGCACAGCACATGAGCAAAGTTCTTCCCCCGCAGATGTTGAAACAGATAGGCGGCA
rJMSF008E23+ TGAATGCACAGCACATGAGCAAAGTTCTTCCCCCGCAGATGTTGAAACAGATAGGCGGCA
                      ____________________________________________________________
consensus TGAATGCACAGCACATGAGCAAAGTTCTTCCCCCGCAGATGTTGAAACAGATAGGCGGCA
 
. : . : . : . : . : . :
rJMFF002F09+ TGGGTGGCTTGCAAAACTTGATGAAACAAATGGGTTCTGCCAAGGATATGATGGGCATGT
rJMSF008E23+ TGGGTGGCTTGCAAAACTTGATGAAACAAATGGGTTCTGCCAAGGATATGATGGGCATGT
rJMFF046H09+ GCCAAGGATATGATGGGCATGT
                      ____________________________________________________________
consensus TGGGTGGCTTGCAAAACTTGATGAAACAAATGGGTTCTGCCAAGGATATGATGGGCATGT
 
. : . : . : . : . : . :
rJMFF002F09+ TTGGTGGTGGGGATAAGTAATCTCTCTCTCTCTCCCTCTCACACACACATACTAAAGCTG
rJMSF008E23+ TTGGTGGTGGGGATAAGTAATCTCTCTCTCTCTCCCTCTCACACACACATACTAAAGCTG
rJMFF046H09+ TTGGTGGTGGGGATAAGTAATCTCTCTCTCTCTCCCTCTCACACACACATANTAAAGCTG
                      ____________________________________________________________
consensus TTGGTGGTGGGGATAAGTAATCTCTCTCTCTCTCCCTCTCACACACACATACTAAAGCTG
 
. : . : . : . : . : . :
rJMFF002F09+ ATTCCAGGTTAGAAGATGAACACCCTCTAGCCTCGAAGCTTGTCTGTCAATCATAGCTGT
rJMSF008E23+ ATTCCAGGTTAGAAGATGAACACCCTCTAGCCTCGAAGCTTGTCTGTCAATCATAGCTGT
rJMFF046H09+ ATTCCAGGTTAGAAGATGAACACCCTCTAGCCTCGAAGCTTGTCTGTCAATCATAGCTGT
                      ____________________________________________________________
consensus ATTCCAGGTTAGAAGATGAACACCCTCTAGCCTCGAAGCTTGTCTGTCAATCATAGCTGT
 
. : . : . : . : . : . :
rJMFF002F09+ ATTTCAGGTTGTCAGTTTCGAATTCTTGAAAGCGGGATGGTTCGTTTTTGTTTTTAGATG
rJMSF008E23+ ATTTCAGGTTGTCAGTTTCGAATTCTTGAAAGCGGGATGGTTCGTTTTTGTTTTTAGATG
rJMFF046H09+ ATTTCAGGTTGTCAGTTTCGAATTCTTGAAAGCGGGATGGTTCGTTTTTGTTTTTAGATG
                      ____________________________________________________________
consensus ATTTCAGGTTGTCAGTTTCGAATTCTTGAAAGCGGGATGGTTCGTTTTTGTTTTTAGATG
 
. : . : . : . : . : . :
rJMFF002F09+ ACAAGGAGTATAATTTCTTTCGTATTTTCGCTCGATCCCCCTTGATAGAGTTGTTATTTC
rJMSF008E23+ ACAAGGAGTATAATTTCTTTCGTATTTTCGCTCGATCCCCCTTGATAGAGTTGTTATTTC
rJMFF046H09+ ACAAGGAGTATAATTTCTTTCGTATTTTCGCTCGATCCCCCTTGATAGAGTTGTTATTTC
                      ____________________________________________________________
consensus ACAAGGAGTATAATTTCTTTCGTATTTTCGCTCGATCCCCCTTGATAGAGTTGTTATTTC
 
. : . : . : . : . : . :
rJMFF002F09+ TTTAATTTTCTTAGTAAACTAGAACTTGGTTTTGTGCCATGTGAATGTATGTACTATGT
rJMSF008E23+ TTTAATTTTCTTAGTAAACTAGAACTTGGTTTTGTGCCATGTGAATGTATGTACTATGTT
rJMFF046H09+ TTTAATTTTCTTAGTAAACTAGAACTTGGTTTTGTGCCATGTGAATGTATGTACTATGTT
                      ____________________________________________________________
consensus TTTAATTTTCTTAGTAAACTAGAACTTGGTTTTGTGCCATGTGAATGTATGTACTATGTT
 
. : . : . : . : . : . :
rJMSF008E23+ GAGAATGGAAGAATGGTTT
rJMFF046H09+ GAGAATGGAAGAATGGTTTTCTGCCATTTTCTCACTTACCAATTAGTAGCTGCTGTTTCC
                      ____________________________________________________________
consensus GAGAATGGAAGAATGGTTTTCTGCCATTTTCTCACTTACCAATTAGTAGCTGCTGTTTCC
 
. : . : . : . : . : . :
rJMFF046H09+ TGACAGAACAAAAAAAAAAGAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus TGACAGAACAAAAAAAAAAGAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG