| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007G07 | Sequence | 518 | 023685 | ref|XP_009600918.1| | 4e-28 | PREDICTED: serine/arginine-rich splicing factor SR34A-like isoform X2 [Nicotian | 680 | 006956 (9) | ref|XP_009600919.1| | 4e-48 | PREDICTED: serine/arginine-rich splicing factor SR34A-like isoform X3 [Nicotian |
| JMFF030N21 | Sequence | 511 | 006956 (9) | ref|XP_009600918.1| | 1e-53 | PREDICTED: serine/arginine-rich splicing factor SR34A-like isoform X2 [Nicotian | 705 | 024367 | ref|XP_004235015.1| | 2e-32 | PREDICTED: serine/arginine-rich splicing factor SR34A [Solanum lycopersicum] re |
| JMFF044P17 | Sequence | 636 | 006956 (9) | ref|XP_009600918.1| | 1e-86 | PREDICTED: serine/arginine-rich splicing factor SR34A-like isoform X2 [Nicotian | 620 | 006956 (9) | gb|EPS60498.1| | 2e-11 | hypothetical protein M569_14305, partial [Genlisea aurea] |
| JMFN016L23 | Sequence | 453 | 006956 (9) | ref|XP_004235015.1| | 3e-27 | PREDICTED: serine/arginine-rich splicing factor SR34A [Solanum lycopersicum] re | |||||
| JMSF012E15 | Sequence | 498 | 006956 (9) | gb|KDP28983.1| | 7e-50 | hypothetical protein JCGZ_19569 [Jatropha curcas] | 783 | 022479 | emb|CDP04993.1| | 5e-41 | unnamed protein product [Coffea canephora] |
| JMSF034E02 | Sequence | 687 | 009099 (3) | 687 | 006956 (9) | ref|XP_004235015.1| | 5e-36 | PREDICTED: serine/arginine-rich splicing factor SR34A [Solanum lycopersicum] re | |||
| JMSF044D21 | Sequence | 601 | 017927 | emb|CBI23079.3| | 2e-04 | unnamed protein product [Vitis vinifera] | 723 | 006956 (9) | ref|XP_004235015.1| | 4e-30 | PREDICTED: serine/arginine-rich splicing factor SR34A [Solanum lycopersicum] re |
| JMSF047N01 | Sequence | 631 | 024283 | emb|CBI23079.3| | 2e-04 | unnamed protein product [Vitis vinifera] | 747 | 006956 (9) | ref|XP_009600919.1| | 7e-48 | PREDICTED: serine/arginine-rich splicing factor SR34A-like isoform X3 [Nicotian |
This contig is upended
. : . : . : . : . : . :
JMFF044P17- AGGAGCACGAGACAGTCCCCGTCAGAGGA
____________________________________________________________
consensus AGGAGCACGAGACAGTCCCCGTCAGAGGA
. : . : . : . : . : . :
JMFF044P17- GCTCGAACAAATCTAATAATTCTGCTTCGACACCAACCGAATCTCAGTGCTGCTGCGAAC
____________________________________________________________
consensus GCTCGAACAAATCTAATAATTCTGCTTCGACACCAACCGAATCTCAGTGCTGCTGCGAAC
. : . : . : . : . : . :
JMSF012E15- ATGAGTGGCCGTTTCTCTCGGACAATCTAT
JMFF030N21- ATGAGTGGCCGTTTCTCTCGGACAATCTAT
JMFF044P17- ACAATTACCGATTTCCCCCCATAGTCAACGATGAGTGGTCGATTTTCTCGCACAATCTAT
____________________________________________________________
consensus ACAATTACCGATTTCCCCCCATAGTCAACGATGAGTGGCCGTTTCTCTCGGACAATCTAT
. : . : . : . : . : . :
JMSF012E15- GTGGGAAACCTTCCCCTGGACATCAGAGAATGGGAAATTGAAGATTTGTTCTATAAGTAT
JMFF030N21- GTGGGAAACCTTCCCCTGGACATCAGAGAATGGGAAATTGAAGATTTGTTCTATAAGTAT
JMFF044P17- GTGGGAAACCTTCCTGCAGATATCAAAGAACGGGAAGTTGAAGATTTGTTCTATAAGTAT
____________________________________________________________
consensus GTGGGAAACCTTCCCCTGGACATCAGAGAATGGGAAATTGAAGATTTGTTCTATAAGTAT
. : . : . : . : . : . :
JMSF012E15- GGACGTATTCAGGATATTGAATTGAAGATTCCACCTCGTCCCCCGGGCTATTGTTTTGTT
JMFF030N21- GGACGTATTCAGGATATTGAATTGAAGATTCCACCTCGTCCCCCGGGCTATTGTTTTGTT
JMFF044P17- GGGCGTATTCTGGATATTGAATTGAAGATTCCCCCTCGCCCACCATGCTATTGTTTTGTT
____________________________________________________________
consensus GGACGTATTCAGGATATTGAATTGAAGATTCCACCTCGTCCCCCGGGCTATTGTTTTGTT
. : . : . : . : . : . :
JMSF012E15- GAGTTTGAAAATTCTAGAGATGCAGAAGATGCCATCAGGGGTAGAGATGGCTACNACTTT
JMFF030N21- GAGTTTGAAAATTCTAGAGATGCAGAAGATGCCATCAGGGGTAGAGATGGCTACAACTTT
JMFF044P17- GAGTTTGAGAATGCTCTAGATGCAGAAGATGCTATCAGGGGCCGAGATGGCTACAACTTT
____________________________________________________________
consensus GAGTTTGAAAATTCTAGAGATGCAGAAGATGCCATCAGGGGTAGAGATGGCTACAACTTT
. : . : . : . : . : . :
JMSF012E15- GATGGTTGTCGACTGAGGGTTGAGCTTGCTCATGGTGGTAG
JMFF030N21- GATGGTTGTCGACTGAGGGTTGAGCTTGCTCATGGTGGTAGGGGGCCATCATCTTCAGTT
JMFF044P17- GATGGCTGTCGATTGAGGGTTGAGCTTGCTCATGGTGGTAGAGGTCCACCATCTTCAAGT
____________________________________________________________
consensus GATGGTTGTCGACTGAGGGTTGAGCTTGCTCATGGTGGTAGGGGTCCATCATCTTCAGTT
. : . : . : . : . : . :
JMFF030N21- GATCGGCGTGGTGG
JMFF044P17- GATCGTCGTGGTGGTGGCTATGGTGGTGGTGGAGGTGGAGGTGGTGGAGGTGGANGNCNT
____________________________________________________________
consensus GATCGTCGTGGTGGTGGCTATGGTGGTGGTGGAGGTGGAGGTGGTGGAGGTGGANGNCNT
. : . : . : . : . : . :
JMFF044P17- CATGGCGTTTCTCGTCATTCTGAGTATCGGGTTATTGTGCGTGGTCTTCCAGATTCTGCT
rJMSF034E02+ TTCCAGATTTTGCT
____________________________________________________________
consensus CATGGCGTTTCTCGTCATTCTGAGTATCGGGTTATTGTGCGTGGTCTTCCAGATTTTGCT
. : . : . : . : . : . :
JMFF044P17- TCCTGGCAAGATTTGAAAGACCACATGCGAAAAGCTGGTGATGTGTGCTTTGCTGAAGTT
rJMFF007G07+ GGCAAGATTTGAAAGACCACATGCGAAAAGCTGGTGATGTGTGCTTTGCTGAAGTT
rJMSF034E02+ TCCTGGCAAGATTTGAAAGACCACATGCGAAAAGCTGGTGATGTGTGCTTTGCTGAAGTT
JMFN016L23- GAAAAGCTGGTGATGTGTGCTTTGCTGAAGTT
rJMSF044D21+ GACCACATGCGAAAAGCTGGTGATGTGTGCTTTGCTGAAGTT
rJMSF047N01+ GGCAAGATTTGAAAGACCACATGCGAAAAGCTGGTGATGTGTGCTTTGCTGAAGTT
____________________________________________________________
consensus TCCTGGCAAGATTTGAAAGACCACATGCGAAAAGCTGGTGATGTGTGCTTTGCTGAAGTT
. : . : . : . : . : . :
JMFF044P17- GCCAATGACAGTGAAAGAACCTTTGGCCTGGTTGATTATACNAATTATGAGGATATGAAA
rJMFF007G07+ GCCAATGACAGTGAAGGAACCTTTGGCCTGGTTGATTATACAAATTATGAGGATATGAAA
rJMSF034E02+ GCCAATGACAGTGAAGGAACCTTTGGCCTGGTTGATTATACAAATTATGAGGATATGAAA
JMFN016L23- GCCAATGACAGTGAAGGAACCTTTGGCCTGGTTGATTATACAAATTATGAGGATATGAAA
rJMSF044D21+ GCCAATGACAGTGAAGGAACCTTTGGCCTGGTTGATTATACAAATTATGAGGATATGAAA
rJMSF047N01+ GCCAATGACAGTGAAGGAACCTTTGGCCTGGTTGATTATACAAATTATGAGGATATGAAA
rJMFF044P17+ ACAAATTATGAGGATATGAAA
____________________________________________________________
consensus GCCAATGACAGTGAAGGAACCTTTGGCCTGGTTGATTATACAAATTATGAGGATATGAAA
. : . : . : . : . : . :
JMFF044P17- TATGCTA
rJMFF007G07+ TATGCTATTCGGAAACTTGATGATAGTGAGTTCAAAAATCCTTGGACCAGGACTTATATC
rJMSF034E02+ TATGCTATTCGGAAACTTGATGATAGTGAGTTCAAAAATCCTTGGACCAGGACTTATATC
JMFN016L23- TATGCTATTCGGAAACTTGATGATAGTGAGTTCAAAAATCCTTGGACCAGGACTTATATC
rJMSF044D21+ TATGCTATTCGGAAACTTGATGATAGTGAGTTCAAAAATCCTTGGACCAGGACTTATATC
rJMSF047N01+ TATGCTATTCGGAAACTTGATGATAGTGAGTTCAAAAATCCTTGGACCAGGACTTATATC
rJMFF044P17+ TATGCTATTCGGAAACTTGATGATAGTGAGTTCAAAAATCCTTGGACCAGGACTTATATC
____________________________________________________________
consensus TATGCTATTCGGAAACTTGATGATAGTGAGTTCAAAAATCCTTGGACCAGGACTTATATC
. : . : . : . : . : . :
rJMFF007G07+ CGGGTGAGAGAACACAAGCATGGTTCATCAAGAAGCCGAAGCCGAAGCCGAAGCAGAAGC
rJMSF034E02+ CGGGTGAGAGAACACAAGCATGGTTCATCAAGAAGCCGAAGCCGAAGCCGAAGCAGAAGC
JMFN016L23- CGGGTGAGAGAACACAAGCATGGTTCATCAAGAAGCCGAAGCCGAAGCCGAAGCAGAAGC
rJMSF044D21+ CGGGTGAGAGAACACAAGCATGGTTCATCAAGAAGCCGAAGCCGAAGCCGAAGCAGAAGC
rJMSF047N01+ CGGGTGAGAGAACACAAGCATGGTTCATCAAGAAGCCGAAGCCGAAGCCGAAGCAGAAGC
rJMFF044P17+ CGGGTGAGAGAACACAAGCATGGTTCATCAAGAAGCCGAAGCCGAAGCCGAAGCAGAAGC
____________________________________________________________
consensus CGGGTGAGAGAACACAAGCATGGTTCATCAAGAAGCCGAAGCCGAAGCCGAAGCAGAAGC
. : . : . : . : . : . :
rJMFF007G07+ AGGAGTCCTAGGAGGAGGAGGAGCAAATCAGCAGACAGATCTAGGTCAAGATCACCACCT
rJMSF034E02+ AGGAGTCCTAGGAGGAGGAGGAGCAAATCAGCAGACAGATCTAGGTCAAGATCACCACCT
JMFN016L23- AGGAGTCCTAGGAGGAGGAGGAGCAAATCAGCAGACAGATCTAGGTCAAGATCACCACCT
rJMSF044D21+ AGGAGTCCTAGGAGGAGGAGGAGCAAATCAGCAGACAGATCTAGGTCAAGATCACCACCT
rJMSF047N01+ AGGAGTCCTAGGAGGAGGAGGAGCAAATCAGCAGACAGATCTAGGTCAAGATCACCACCT
rJMFF044P17+ AGGAGTCCTAGGAGGAGGAGGAGCAAATCAGCAGACAGATCTAGGTCAAGATCACCACCT
____________________________________________________________
consensus AGGAGTCCTAGGAGGAGGAGGAGCAAATCAGCAGACAGATCTAGGTCAAGATCACCACCT
. : . : . : . : . : . :
rJMFF007G07+ CCACGGTCAAGATCTGCATCACCGATCAAGTCATCACGACCTATTTCTAGGTCAAGATCA
rJMSF034E02+ CCACGGTCAAGATCTGCATCACCGATCAAGTCATCACGACCTATTTCTAGGTCAAGATCA
JMFN016L23- CCACGGTCAAGATCTGCATCACCGATCAAGTCATCACGACCTATTTCTAGGTCAAGATCA
rJMSF044D21+ CCACGGTCAAGATCTGCATCACCGATCAAGTCATCACGACCTATTTCTAGGTCAAGATCA
rJMSF047N01+ CCACGGTCAAGATCTGCATCACCGATCAAGTCATCACGACCTATTTCTAGGTCAAGATCA
rJMFF044P17+ CCACGGTCAAGATCTGCATCACCGATCAAGTCATCACGACCTATTTCTAGGTCAAGATCA
____________________________________________________________
consensus CCACGGTCAAGATCTGCATCACCGATCAAGTCATCACGACCTATTTCTAGGTCAAGATCA
. : . : . : . : . : . :
rJMFF007G07+ GGATCAAGGCCAAGATCAGGGTCAGCATCTCCCCATCAGGCCCGCGCCAACAGTGGCTAA
rJMSF034E02+ GGATCAAGGCCAAGATCAGGGTCAGCATCTCCCCATCAGGCCCGCGCCAACAGTGGCTAA
JMFN016L23- GGATCAAGGCCAAGATCAGGGTCAGCATCTCCCCATCAGGCCCGCGCCAACAGTGGCTAA
rJMSF044D21+ GGATCAAGGCCAAGATCAGGGTCAGCATCTCCCCATCAGGCCCGCGCCAACAGTGGCTAA
rJMSF047N01+ GGATCAAGGCCAAGATCAGGGTCAGCATCTCCCCATCAGGCCCGCGCCAACAGTGGCTAA
rJMFF044P17+ GGATCAAGGCCAAGATCAGGGTCAGCATCTCCCCATCAGGCCCGCGCCAACAGTGGCTAA
____________________________________________________________
consensus GGATCAAGGCCAAGATCAGGGTCAGCATCTCCCCATCAGGCCCGCGCCAACAGTGGCTAA
. : . : . : . : . : . :
rJMFF007G07+ CTCTGTCAATTACAAGTCAATCTACCTCTAGGCTGCTTCGGTGTGGGAAGGACTGCAAAC
rJMSF034E02+ CTCTGTCAATTACAAGTCAATCTACCTCTAGGCTGCTTCGGTGTGGGAAGGACTGCAAAC
JMFN016L23- CTGTGTCAATTACAAGTCAATCTACCTCTAGGCTGCTTCGGTGTGGGAAGGACTGCAAAC
rJMSF044D21+ CTCTGTCAATTACAAGTCAATCTACCTCTAGGCTGCTTCGGTGTGGGAAGGACTGCAAAC
rJMSF047N01+ CTCTGTCAATTACAAGTCAATCTACCTCTAGGCTGCTTCGGTGTGGGAAGGACTGCAAAC
rJMFF044P17+ CTCTGTCAATTACAAGTCAATCTACCTCTAGGCTGCTTCGGTGTGGGAAGGACTGCAAAC
____________________________________________________________
consensus CTCTGTCAATTACAAGTCAATCTACCTCTAGGCTGCTTCGGTGTGGGAAGGACTGCAAAC
. : . : . : . : . : . :
rJMFF007G07+ CTCCCATACTCGGTTTGTCTAGGGCTGAAATCATAAACTAGTTCTTTATTATTCGTTTAA
rJMSF034E02+ CTCCCATACTCGGTTTGTCTAGGGCTGAAATCATAAACTAGTTCTTTATTATTCGTTTAA
JMFN016L23- C
rJMSF044D21+ CTCCCATACTCGGTTTGTCTAGGGCTGAAATCATAAACTAGTTCTTTATTATTCGTTTAA
rJMSF047N01+ CTCCCATACTCGGTTTGTCTAGGGCTGAAATCATAAACTAGTTCTTTATTATTCGTTTAA
rJMFF044P17+ CTCCCATACTCGGTTTGTCTAGGGCTGAAATCATAAACTAGTTCTTTATTATTCGTTTAA
____________________________________________________________
consensus CTCCCATACTCGGTTTGTCTAGGGCTGAAATCATAAACTAGTTCTTTATTATTCGTTTAA
. : . : . : . : . : . :
rJMFF007G07+ AGCAAAACTCCATAAACCGGCTATTTCTAGATCCTTTCTGTCAAC
rJMSF034E02+ AGCAAAACTCCATAAACCGGCTATTTCTAGATCCTTTCTGTCAACTGTATGCAGGTGAAC
rJMSF044D21+ AGCAAAACTCCATAAACCGGCTATTTCTAGATCCTTTCTGTCAACTGTATGCAGGTGAAC
rJMSF047N01+ AGCAAAACTCCATAAACCGGCTATTTCTAGATCCTTTCTGTCAACTGTATGCAGGTGAAC
rJMFF044P17+ AGCAAAACTCCATAAACCGGCTATTTCTAGATCCTTTCTGTCAACTGTATGCAGGTGAAC
____________________________________________________________
consensus AGCAAAACTCCATAAACCGGCTATTTCTAGATCCTTTCTGTCAACTGTATGCAGGTGAAC
. : . : . : . : . : . :
rJMSF034E02+ TTTTTTAGTACCTGTTTGTTTGTTCCGCAATCCTTGTTGTTTA
rJMSF044D21+ TTTTTTAGTACCTGTTTGTTTGTTCCGCAATCCTTGTTGTTTA
rJMSF047N01+ TTTTTTAGTACCTGTTTGTTTGTTCCGCAATCCTTGTTGTTTACTGTGCTGTTGTCCATG
rJMFF044P17+ TTTTTTAGTACCTGTTTGTTTGTTCCGCAATCCTTGTTGTTTACTGTGCTGTTGT-CATG
____________________________________________________________
consensus TTTTTTAGTACCTGTTTGTTTGTTCCGCAATCCTTGTTGTTTACTGTGCTGTTGTCCATG
. : . : . : . : . : . :
rJMSF047N01+ TTTTGA
rJMFF044P17+ TTTTGACTGAGTGTTATTACCATTTTCACTTGTTTTGTTTAAAGAATACACCTTGAGAAC
____________________________________________________________
consensus TTTTGACTGAGTGTTATTACCATTTTCACTTGTTTTGTTTAAAGAATACACCTTGAGAAC