| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008C02 | Sequence | 572 | 012833 (4) | ref|XP_009784283.1| | 1e-13 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti | 243 | 006907 (5) | |||
| JMFF014P14 | Sequence | 566 | 012833 (4) | ref|XP_009784283.1| | 7e-08 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti | 748 | 006907 (5) | ref|XP_009784283.1| | 3e-44 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti |
| JMFF037N06 | Sequence | 503 | 012833 (4) | ref|XP_009784283.1| | 7e-07 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti | 762 | 006907 (5) | ref|XP_009784284.1| | 2e-47 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X2 [Nicoti |
| JMFF037N17 | Sequence | 547 | 006907 (5) | ref|XP_009784283.1| | 3e-28 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti | |||||
| JMFF043N21 | Sequence | 642 | 012833 (4) | ref|XP_009784283.1| | 7e-27 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti | 619 | 006907 (5) | ref|XP_009784283.1| | 1e-32 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti |
This contig is upended
. : . : . : . : . : . :
rJMFF014P14+ GATGAAGCAGAATTCGGAGAGGCAGC
rJMFF037N06+ GAGACCCAGAAATCCTTGATGAAGCAGAATTCGGAGAGGCAGC
____________________________________________________________
consensus GAGACCCAGAAATCCTTGATGAAGCAGAATTCGGAGAGGCAGC
. : . : . : . : . : . :
rJMFF014P14+ AAGAAATGCCGAGTATGATGAGACCAAAATACATCCTTCTTCTGAGCTTGGTTTGCTGGA
rJMFF037N06+ AAGAAATGCCGAGTATGATGAGACCAAAATACATCCTTCTTCTGAGCTTGGTTTGCTGGA
____________________________________________________________
consensus AAGAAATGCCGAGTATGATGAGACCAAAATACATCCTTCTTCTGAGCTTGGTTTGCTGGA
. : . : . : . : . : . :
rJMFF014P14+ TGAACAGGATGAAGATGAACGAAGAATGTTTTTTATTCAGATTCCTAATAATTTGCCTTC
rJMFF043N21+ GAACAGGATGAAGATGAACGAAGAATGTTTNTTATTCAGATTCCTAATAATTTGCCTTC
rJMFF037N06+ TGAACAGGATGAAGATGAACGAAGAATGTTTTTTATTCAGATTCCTAATAATTTGCCTTC
____________________________________________________________
consensus TGAACAGGATGAAGATGAACGAAGAATGTTTTTTATTCAGATTCCTAATAATTTGCCTTC
. : . : . : . : . : . :
rJMFF014P14+ GTGCAAGAGTATCGGAGATCAGACAACATTGCCTGCTGCATCGACGAAGGGAAAAGAGGT
rJMFF043N21+ GTGCAAGAGTATCGGAGATCAGACAACATTGCCTGCTGCATCGACGAAGGGAAAAGAGGT
rJMFF037N17+ TGCATGGACGAAGGGAAAAGAGGT
rJMFF037N06+ GTGCAAGAGTATCGGAGATCAGACAACATTGCCTGCTGCATCGACGAAGGGAAAAGAGGT
____________________________________________________________
consensus GTGCAAGAGTATCGGAGATCAGACAACATTGCCTGCTGCATCGACGAAGGGAAAAGAGGT
. : . : . : . : . : . :
rJMFF014P14+ AATTGAGGTTCCAACTAGTGCAAAAGGAAAAGAAAAAGTCGAGAACCCCCCGACAGTTTT
rJMFF043N21+ AATTGAGGTTCCAACTAGTGCAAAAGGAAAAGAAAAAGTCGAGAACCCCCTGACAGTTTT
rJMFF037N17+ AATTGAGGTTCCAAGTAGTGCAAAAGGAAAAGAAAAAGTCGAGAACCCCCCGACAGTTTT
rJMFF037N06+ AATTGAGGTTCCAACTAGTGCAAAAGGAAAAGAAAAAGTCGAGAACCCCCCGACAGTTTT
____________________________________________________________
consensus AATTGAGGTTCCAACTAGTGCAAAAGGAAAAGAAAAAGTCGAGAACCCCCCGACAGTTTT
. : . : . : . : . : . :
rJMFF014P14+ GAGAAGGAGAAGCAGTCCAAAGAAGGGATGCAGTTTGGAAGAATTGCCCGGGGGTTACAT
rJMFF043N21+ GAGAAGGAGAAGCAGTCCAAAGAAGGGATGCAGTTTGGAAGAATTGCCCGGGGGTTACAT
rJMFF037N17+ GAGAAGGAGAANCAGTCCAAAGAAGGGATGCAGTTTGGAAGAATTGCCCGGGGGTTACAT
rJMFF037N06+ GAGAAGGAGAAGCAGTCCAAAGAAGGGATGCAGTTTGGAAGAATTGCCCGGGGGTTACAT
____________________________________________________________
consensus GAGAAGGAGAAGCAGTCCAAAGAAGGGATGCAGTTTGGAAGAATTGCCCGGGGGTTACAT
. : . : . : . : . : . :
rJMFF014P14+ GGGGAAGATGCTGGTTTACAAGAGTGGAGGAGTTAAATTGAAGCTAGGAAACATCTTGTA
rJMFF043N21+ GGGGAAGATGCTGGTTTACAAGAGTGGAGGAGTTAAATTGAAGCTAGGAAACATCTTGTA
rJMFF037N17+ GGGGAAGATGCTGGTTTACAAGAGTGGAGGAGTTAAATTGAAGCTAGGAAACATCTTGTA
rJMFF037N06+ GGGGAAGATGCTGGTTTACAAGAGTGGAGGAGTTAAATTGAAGCTAGGAAACATCTTGTA
____________________________________________________________
consensus GGGGAAGATGCTGGTTTACAAGAGTGGAGGAGTTAAATTGAAGCTAGGAAACATCTTGTA
. : . : . : . : . : . :
rJMFF014P14+ CGATGTCTCGCCTGGGGTAGGTTTCTCATCAGCTCAGGAAGTTGTTGCAATCAACACCGT
rJMFF043N21+ CGATGTCTCGCCTGGGGTAGGTTTCTCATCAGCTCAGGAAGTTGTTGCAATCAACACCGT
rJMFF037N17+ CGATGTCTCGCCTGGGGTAGGTTTCTCATCAGCTCAGGAAGTTGTTGCAATCAACACCGT
rJMFF037N06+ CGATGTCTCGCCTGGGGTAGGTTTCTCATCAGCTCAGGAAGTTGTTGCAATCAACACCGT
____________________________________________________________
consensus CGATGTCTCGCCTGGGGTAGGTTTCTCATCAGCTCAGGAAGTTGTTGCAATCAACACCGT
. : . : . : . : . : . :
rJMFF014P14+ CGATAAAAACTGCTGTAAGCTGGGAGGTATTTACAAACATGCTGTCGTCCTTCCTGACAT
rJMFF043N21+ CGATAAAAACTGCTGTAAGCTGGGAGGTATTTACAAACATGCTGTCGTCCTTCCTGACAT
rJMFF037N17+ CGATAAAAACTGCTGTAAGCTGGGAGGTATTTACAAACATGCTGTCGTCCTTCCTGACAT
rJMFF008C02+ GATAAAAACTGCTGTAAGCTGGGAGGTATTTACAAACATGCTGTCGTCCTTCCTGACAT
rJMFF037N06+ CGATAAAAACTGCTGTAAGCTGGGAGGTATTTACAAACATGCTGTCGTCCTTCCTGACAT
____________________________________________________________
consensus CGATAAAAACTGCTGTAAGCTGGGAGGTATTTACAAACATGCTGTCGTCCTTCCTGACAT
. : . : . : . : . : . :
rJMFF014P14+ CGATTCACTCCTGGATTCGGATTCTAACTAACCAAGGTAGAGACTAGTACGAGATCACCG
rJMFF043N21+ CGATTCACTCCTGGATTCGGATTCTAACTAACCAAGGTAGAGACTAGTACGAGATCACCG
rJMFF037N17+ CGATTCACTCCTGGATTCGGATTCTAACTAACCAAGGTAGAGACTAGTACGAGATCACCG
rJMFF008C02+ CGATTCACTCCTGGATTCGGATTCTAACTAACCAAGGTAGAGACTAGTACGAGATCACCG
rJMFF037N06+ CGATTCACTCCTGGATTCGGATTCTAACTAACCAAGGTAGAGACTAGTACGAGATCACCG
____________________________________________________________
consensus CGATTCACTCCTGGATTCGGATTCTAACTAACCAAGGTAGAGACTAGTACGAGATCACCG
. : . : . : . : . : . :
rJMFF014P14+ CCATTATGCTATGGATATAACATGAAAACAATGGCCTATGGTCACTGGATATTGAAGCCT
rJMFF043N21+ CCATTATGCTATGGATATAACATGAAAACAATGGCCTATGGTCACTGGATATTGAAGCCT
rJMFF037N17+ CCATTATGCTATGGATATAACATGAAANCAATGGCCTATGGTCACTGGATATTGAAGCCT
rJMFF008C02+ CCATTATGCTATGGATATAACATGAAAACAATGGCCTATGGTCACTGGATATTGAAGCCT
rJMFF037N06+ CCATTATGCTATGGATATAACATGAAAACAATGGCCTATGGTCACTGGATATTGAAGCCT
____________________________________________________________
consensus CCATTATGCTATGGATATAACATGAAAACAATGGCCTATGGTCACTGGATATTGAAGCCT
. : . : . : . : . : . :
rJMFF014P14+ AATTGTACCTAGAATCATTTCATACATTTAACTT-CTATGTAACAATGTCCCTCTATCTG
rJMFF043N21+ AATTGTACCTAGAATCATTTCATACATTTAACTT-CTATGTAACAATGTCCCTCTATCTG
rJMFF037N17+ AATTGTACCTAGAATCATTTCATACATTTAACTTGCTATGTAACAATGTCCCTCTATCTG
rJMFF008C02+ AATTGTACCTAGAATCATTTCATACATTTAACTT-CTATGTAACAATGTCCCTCTATCTG
rJMFF037N06+ AATTGTACCTAGAATCATTTCATACATTTAACTT-CTATGTAACAATGTCCCTCTATCTG
____________________________________________________________
consensus AATTGTACCTAGAATCATTTCATACATTTAACTT-CTATGTAACAATGTCCCTCTATCTG
. : . : . : . : . : . :
rJMFF014P14+ CAGAATGAATGCTTTGGACACAATTGAAGCATGTGCTCCATCTCAACTAAAAGCCTAAGT
rJMFF043N21+ CAGAATGAATGCTTTGGACAC
rJMFF037N17+ CAGAATGAATGCTTTGGACACAATTGAAGCATGTGCTCCAT
rJMFF008C02+ CAGAA
rJMFF037N06+ CAGAATGAATGCTTTGGACACAATTGAAGCATGTGCTCCATCTCAACTAAAAGCCTAAGT
____________________________________________________________
consensus CAGAATGAATGCTTTGGACACAATTGAAGCATGTGCTCCATCTCAACTAAAAGCCTAAGT