clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF037J07 | Sequence | 537 | 009370 (3) | ref|XP_009771803.1| | 1e-61 | PREDICTED: 5-epi-aristolochene synthase-like, partial [Nicotiana sylvestris] | 766 | 006905 (3) | ref|XP_009766331.1| | 6e-70 | PREDICTED: 5-epi-aristolochene synthase 2-like [Nicotiana sylvestris] |
JMSF027G11 | Sequence | 695 | 009370 (3) | ref|XP_009771803.1| | 2e-61 | PREDICTED: 5-epi-aristolochene synthase-like, partial [Nicotiana sylvestris] | 818 | 006905 (3) | ref|XP_009766331.1| | 6e-81 | PREDICTED: 5-epi-aristolochene synthase 2-like [Nicotiana sylvestris] |
JMSF034A08 | Sequence | 693 | 009370 (3) | ref|XP_009771803.1| | 7e-61 | PREDICTED: 5-epi-aristolochene synthase-like, partial [Nicotiana sylvestris] | 775 | 006905 (3) | ref|XP_009766331.1| | 8e-81 | PREDICTED: 5-epi-aristolochene synthase 2-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF027G11+ TGCCATATAGATG
____________________________________________________________
consensus TGCCATATAGATG
. : . : . : . : . : . :
rJMSF034A08+ CCTGATGNATTAGAGATTATACCGATGCCATACAAAAGT
rJMSF027G11+ ACACATTGATTCTTTGGCACCCCTGATGAATTAGAGATTATACCGATGCCATACAAAAGT
____________________________________________________________
consensus ACACATTGATTCTTTGGCACCCCTGATGAATTAGAGATTATACCGATGCCATACAAAAGT
. : . : . : . : . : . :
rJMSF034A08+ GGGATATAAACCAAATGAATCGTCTTCCAGATTATATGAAGATAAGCTATAAAGCTCTTA
rJMSF027G11+ GGGATATAAACCAAATGAATCGTCTTCCAGATTATATGAAGATAAGCTATAAAGCTCTTA
____________________________________________________________
consensus GGGATATAAACCAAATGAATCGTCTTCCAGATTATATGAAGATAAGCTATAAAGCTCTTA
. : . : . : . : . : . :
rJMSF034A08+ TAAATCTTTATGATGAGGAGTTCAATAAAGAACTATCTGAAGAAGAAAGAATTTTTGCAC
rJMSF027G11+ TAAATCTTTATGATGAGGAGTTCAATAAAGAACTATCTGAAGAAGAAAGAATTTTTGCAC
rJMFF037J07+ GATGAGGATTTCAATAAAGAACTATGTGAAGAAGGAAGAATTTTTGCAC
____________________________________________________________
consensus TAAATCTTTATGATGAGGAGTTCAATAAAGAACTATCTGAAGAAGAAAGAATTTTTGCAC
. : . : . : . : . : . :
rJMSF034A08+ TTTATAATGCAAAAGAGAGAATGAAAGAACTTGTGAGGGCTTATTACACGGAATTAAAAT
rJMSF027G11+ TTTATAATGCAAAAGAGAGAATGAAAGAACTTGTGAGGGCTTATTACACGGAATTAAAAT
rJMFF037J07+ TTTATTATGCAAAAGAGAGAATGAAAGAACTTGTCAGGGCTTATTACACGGAATTAAAAT
____________________________________________________________
consensus TTTATAATGCAAAAGAGAGAATGAAAGAACTTGTGAGGGCTTATTACACGGAATTAAAAT
. : . : . : . : . : . :
rJMSF034A08+ GGTCTACTAAAGGATGCATGCCACCACTTGTTGAGTATCTAAGGAATTATGGTTTAGCTA
rJMSF027G11+ GGTCTACTAAAGGATGCATGCCACCACTTGTTGAGTATCTAAGGAATTATGGTTTAGCTA
rJMFF037J07+ GGTCTACTAAAGGATGCATGCCACCATTTGTTGAGTATCTAAACAAT---GGTCTAGCTA
____________________________________________________________
consensus GGTCTACTAAAGGATGCATGCCACCACTTGTTGAGTATCTAAGGAATTATGGTTTAGCTA
. : . : . : . : . : . :
rJMSF034A08+ GTAGCACCATCTACGTGGTCATCACAACTTTTTTACTTGGCCAGAAACCCGTTACAAGAG
rJMSF027G11+ GTAGCACCATCTACGTGGTCATCACAACTTTTTTACTTGGCCAGAAACCCGTTACAAGAG
rJMFF037J07+ GTAGCACCGTCTACTTGCTCATCACAACTTTTTTACTTGGCATGAAATCCGTTACAAGAG
____________________________________________________________
consensus GTAGCACCATCTACGTGGTCATCACAACTTTTTTACTTGGCCAGAAACCCGTTACAAGAG
. : . : . : . : . : . :
rJMSF034A08+ AAGCATTTGAATGGGTGAATCAAAACCCTAGAATTGTTGAGGCCAATGCGATATTGGCTC
rJMSF027G11+ AAGCATTTGAATGGGTGAATCAAAACCCTAGAATTGTTGAGGCCAATGCGATATTGGCTC
rJMFF037J07+ AAGCATTTGAATGGGTGAATCAAAACCCTAGAATTGTTGAGGCCAATGCGATATTGGGTC
____________________________________________________________
consensus AAGCATTTGAATGGGTGAATCAAAACCCTAGAATTGTTGAGGCCAATGCGATATTGGCTC
. : . : . : . : . : . :
rJMSF034A08+ GGCTTATTAATGACGTAGCTTCCTATGAGCGTGAGAAAAGCAACAGCCTATAT------A
rJMSF027G11+ GGCTTATTAATGACGTAGCTTCCTATGAGCGTGAGAAAAGCAACAGCCTATAT------A
rJMFF037J07+ GGCTTATTAATGACATAGGCTCCTATGAGCGTGAGAAAAGCAGCAGCCTAATTGCAATAA
____________________________________________________________
consensus GGCTTATTAATGACGTAGCTTCCTATGAGCGTGAGAAAAGCAACAGCCTATAT------A
. : . : . : . : . : . :
rJMSF034A08+ CAGGGATTGATTGTTACATGAGTGATTATGGCGTATCTGTTGATGAAGCAATGCACAAGC
rJMSF027G11+ CAGGGATTGATTGTTACATGAGTGATTATGGCGTATCTGTTGATGAAGCAATGCACAAGC
rJMFF037J07+ CAGGGATTGATTGTTACATGAGTGATTATGGCGTATCTGTTCATGAAGCAATGGACAAGC
____________________________________________________________
consensus CAGGGATTGATTGTTACATGAGTGATTATGGCGTATCTGTTGATGAAGCAATGCACAAGC
. : . : . : . : . : . :
rJMSF034A08+ TCCAAGAAATGGTTAATAATGCCTGGAAAGATATCAATGAAGATATTCTTCAACCAACTT
rJMSF027G11+ TCCAAGAAATGGTTAATAATGCCTGGAAAGATATCAATGAAGATATTCTTCAACCAACTT
rJMFF037J07+ TCAAAGAAATGATTAATAATGCGTGGAAAGATATCAATGAAGATATTCTTCAACCAACTT
____________________________________________________________
consensus TCCAAGAAATGGTTAATAATGCCTGGAAAGATATCAATGAAGATATTCTTCAACCAACTT
. : . : . : . : . : . :
rJMSF034A08+ T
rJMSF027G11+ T
rJMFF037J07+ TTCCAATCTCTAGAGAGATTCTTATGTGTCTTCTCAACATTGCTCGTGCGGTTAGTGTGT
____________________________________________________________
consensus TTCCAATCTCTAGAGAGATTCTTATGTGTCTTCTCAACATTGCTCGTGCGGTTAGTGTGT
. : . : . : . : . : . :
rJMFF037J07+ TGTATATGCAAAATCAAGATGGATTTACTAACTCTGAAAAAGTCATGAAGCCTTATATGA
____________________________________________________________
consensus TGTATATGCAAAATCAAGATGGATTTACTAACTCTGAAAAAGTCATGAAGCCTTATATGA
. : . : . : . : . : . :
rJMFF037J07+ ATGCTCTTTTTGTGGAATCCTTTGAAGTCTAAGTTGCCGTACGTGGTTTCTTTGGTCTTT
____________________________________________________________
consensus ATGCTCTTTTTGTGGAATCCTTTGAAGTCTAAGTTGCCGTACGTGGTTTCTTTGGTCTTT
. : . : . : . : . : . :
rJMFF037J07+ GTATTGTTTGTGTGTGTTTTCCCTTTTTAATGTATTCTGCAGTTTGAATTGTAATAATGT
____________________________________________________________
consensus GTATTGTTTGTGTGTGTTTTCCCTTTTTAATGTATTCTGCAGTTTGAATTGTAATAATGT
. : . : . : . : . : . :
rJMFF037J07+ GAAGGGGAGAGACAAGCCTTGTACGCATCATACATCCATATATCCTTTGTGACAATAAAG
____________________________________________________________
consensus GAAGGGGAGAGACAAGCCTTGTACGCATCATACATCCATATATCCTTTGTGACAATAAAG