Contig 006897:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034B10Sequence231010264 (2)742006897 (3)ref|XP_009626682.1|9e-42PREDICTED: growth-regulating factor 1-like [Nicotiana tomentosiformis]
JMSF017O18Sequence713006897 (3)ref|XP_009626682.1|3e-52PREDICTED: growth-regulating factor 1-like [Nicotiana tomentosiformis]
JMSF040O18Sequence591010264 (2)ref|XP_004238069.1|8e-15PREDICTED: growth-regulating factor 1-like [Solanum lycopersicum]856006897 (3)ref|XP_009626682.1|3e-62PREDICTED: growth-regulating factor 1-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF040O18+                                                  AGTCAACAACATTCCATTAT
                      ____________________________________________________________
consensus                                                     AGTCAACAACATTCCATTAT
 
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rJMSF040O18+          CAAAGACCAGCATCATCCTTATGAAGCATCATCAAGATCAGGGTTTGGATTAGTCTGCTC
                      ____________________________________________________________
consensus             CAAAGACCAGCATCATCCTTATGAAGCATCATCAAGATCAGGGTTTGGATTAGTCTGCTC
 
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rJMSF017O18+                                                   GCTATAGTACTACTCATGA
rJMSF040O18+          CAACCNTCTGCTAAATCCTTTGAGTAAAGGCGGCTCTTCAAGCTATAGTACTACTCATGA
rJMFF034B10+                                                   GCTATAGTACTACTCATGA
                      ____________________________________________________________
consensus             CAACCNTCTGCTAAATCCTTTGAGTAAAGGCGGCTCTTCAAGCTATAGTACTACTCATGA
 
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rJMSF017O18+          AGATGTGAGTGATCGTGAGAGCAAAACCCGCCATTCACTTCATCAGTTCATGGATGATTG
rJMSF040O18+          AGATGTGAGTGATCGTGAGAGCAAAACCCGCCATTCACTTCATCAGTTCATGGATGATTG
rJMFF034B10+          AGATGTGAGTGATCGTGAGAGCAAAACCCGCCATTCACTTCATCAGTTCATGGATGATTG
                      ____________________________________________________________
consensus             AGATGTGAGTGATCGTGAGAGCAAAACCCGCCATTCACTTCATCAGTTCATGGATGATTG
 
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rJMSF017O18+          GCCCAAGAACCAGCCAGATATCGATCTCCAATCAGATCAAACTCGCCTCTCCATCTCCAT
rJMSF040O18+          GCCCAAGAACCAGCCAGATATCGATCTCCAATCAGATCAAACTCGCCTCTCCATCTCCAT
rJMFF034B10+          GCCCAAGAACCAGCCAGATATCGATCTCCAATCAGATCAAACTCGCCTCTCCATCTCCAT
                      ____________________________________________________________
consensus             GCCCAAGAACCAGCCAGATATCGATCTCCAATCAGATCAAACTCGCCTCTCCATCTCCAT
 
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rJMSF017O18+          ACCAATGTCCACTTCAGACTTCATGTCTTCAACGTCGTCTCCAGTGTCTGAGAAGCTTGC
rJMSF040O18+          ACCAATGTCCACTTCAGACTTCATGTCTTCAACGTCGTCTCCAGTGTCTGAGAAGCTTGC
rJMFF034B10+          ACCAATGTCCACTTCAGACTTCATGTCTTCAACGTCGTCTCCAGTGTCTGAGAAGCTTGC
                      ____________________________________________________________
consensus             ACCAATGTCCACTTCAGACTTCATGTCTTCAACGTCGTCTCCAGTGTCTGAGAAGCTTGC
 
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rJMSF017O18+          AGCTTCCCCGCTGAAACTATCGTGGGAGCACGAAACCACCACCC-AAATGGGGTTAGGAG
rJMSF040O18+          AGCTTCCCCGCTGAAACTATCGTGGGAGCACGAAACCACCACCC-AAATGGGGTTAGGAG
rJMFF034B10+          AGCTTCCCCGCTGAAACTATCGTGGGAGCACGAAACCACCACCCAAAATGGGGTTAGGAG
                      ____________________________________________________________
consensus             AGCTTCCCCGCTGAAACTATCGTGGGAGCACGAAACCACCACCC-AAATGGGGTTAGGAG
 
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rJMSF017O18+          TGGGGGCGGTTATCAACCAAAGACAAGGAAACTGGATTCCCATAGCGTGGGAATCATCAT
rJMSF040O18+          TGGGGGCGGTTATCAACCAAAGACAAGGAAACTGGATTCCCATAGCGTGGGAATCATCAT
rJMFF034B10+          TGGGGGCGGTTATCAACCAAAGACAAGGAAACTGGATTCCCATAGCGTGGGAATCATCAT
                      ____________________________________________________________
consensus             TGGGGGCGGTTATCAACCAAAGACAAGGAAACTGGATTCCCATAGCGTGGGAATCATCAT
 
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rJMSF017O18+          CTGTGGGTGGACCTCTGGGCGAGGTTTTTCACAGCACTAACAGTAAGTCATCAGGTGACT
rJMSF040O18+          CTGTGGGTGGACCTCTGGGCGAGGTTTTTCACAGCACTAACAGTAAGTCATCAGGTGACT
rJMFF034B10+          CTGTGGGTGGACCTCTGGGCGAGGTTTTTCACAGCACTAACAGTAAGTCATCAGGTGACT
                      ____________________________________________________________
consensus             CTGTGGGTGGACCTCTGGGCGAGGTTTTTCACAGCACTAACAGTAAGTCATCAGGTGACT
 
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rJMSF017O18+          GCAAAAACGCCTCGGCCCCTCTTAACTTCATGGAGGGATGGGATGGGAGTCCAAGAATGG
rJMSF040O18+          GCAAAAACGCCTCGGCCCCTCTTAACCTCATGGAGGGATGGGATGGGAGTCCAAGAATGG
rJMFF034B10+          GCAAAAACGCCTCGGCCCCTCTTAACCTCATGGAGGGATGGGATGGGAGTCCAAGAATGG
                      ____________________________________________________________
consensus             GCAAAAACGCCTCGGCCCCTCTTAACCTCATGGAGGGATGGGATGGGAGTCCAAGAATGG
 
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rJMSF017O18+          CTTCATCCCCGACTGGGGTTTTGCAGAAGGCGGCGTTCTGTTCACACTNGAATAGCAGTG
rJMSF040O18+          CTTCATCCCCGACTGGGGTTTTGCAGAAGGCGGCGTTCTGTTCACACTCGAATAGCAGTG
rJMFF034B10+          CTTCATCCCCGACTGGGGTTTTGCAGAAGGCGGCGTTCTGTTCACACTCGAATAGCAGTG
                      ____________________________________________________________
consensus             CTTCATCCCCGACTGGGGTTTTGCAGAAGGCGGCGTTCTGTTCACACTCGAATAGCAGTG
 
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rJMSF017O18+          CAGGGAGCAGTCCGAGAGCTGAGAATAACAGTGTTATGAACCCATCCCTGCAAGCTCTGT
rJMSF040O18+          CAGGGAGCAGTCCGAGAGCTGAGAATAACAGTGTTATGAACCCATCCCTGCAAGCTCTGT
rJMFF034B10+          CAGGGAGCAGTCCGAGAGCTGAGAATAACAGTGTTATGAACCCATCCCTGCAAGCTCTGT
                      ____________________________________________________________
consensus             CAGGGAGCAGTCCGAGAGCTGAGAATAACAGTGTTATGAACCCATCCCTGCAAGCTCTGT
 
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rJMSF017O18+          AGCCCTGAAGCAAGAAGATGAAGATCATCATCAGTATTAATCTAGCTTTTTTCCAGTTAA
rJMSF040O18+          AGCCCTGAAGCAAGAAGATGAAGATCATCATCAGTATTAATCTAGCTTTTTTCCAGTTAA
rJMFF034B10+          AGCCCTGAAGCAAGAAGATGAAGATCATCATCAGTATTAATCTAGCTTTTTTCCAGTTAA
                      ____________________________________________________________
consensus             AGCCCTGAAGCAAGAAGATGAAGATCATCATCAGTATTAATCTAGCTTTTTTCCAGTTAA
 
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rJMSF017O18+          GATTTGTTAATTTGATTGCTTGTGTAATATTTTCAGCCTTGAGAACACATAGCTTGTGTA
rJMSF040O18+          GATTTGTTAATTTGATTGCTTGTGTAATATTTTCAGCCTTGAGAACACATAGCTTGTGTA
rJMFF034B10+          GATTTGTTAATTTGATTGCTTGTGTAATATTTTCAGCCTTGAGAACACATAGCTTGTGTA
                      ____________________________________________________________
consensus             GATTTGTTAATTTGATTGCTTGTGTAATATTTTCAGCCTTGAGAACACATAGCTTGTGTA
 
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rJMSF017O18+          ATAGCCGAGTAAATGCCTAAATGGCATCCATCAGA                         
rJMSF040O18+          ATAGCCGAGTAAATGCCTAAATGGCATCCATCAGACTTCAAGTTTAGATTTTTGCTC   
rJMFF034B10+          ATAGCCGAGTAAATGCCTAAATGGCATCCATCAGACTTCAAGTTTAGATTTTTGCTCTAA
                      ____________________________________________________________
consensus             ATAGCCGAGTAAATGCCTAAATGGCATCCATCAGACTTCAAGTTTAGATTTTTGCTCTAA