Contig 006879:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP007A08Sequence325006879 (5)gb|EPS57229.1|1e-04hypothetical protein M569_17591, partial [Genlisea aurea]
JMFF020G21Sequence166013236 (7)262006879 (5)ref|XP_008237176.1|1e-14PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like
JMFF029M19Sequence709006879 (5)ref|XP_010676904.1|1e-61PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like
JMFS125G08Sequence575006879 (5)
JMSF006I02Sequence396013236 (7)ref|XP_003524744.1|1e-14PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like 453006879 (5)ref|XP_010676904.1|1e-39PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like

Alignment

This contig is upended


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JMFS125G08-                        CGTTCTCCATTGGAGCAGAGGAAGGTCGCCAATCACCCTCCGTCGCT
                      ____________________________________________________________
consensus                          CGTTCTCCATTGGAGCAGAGGAAGGTCGCCAATCACCCTCCGTCGCT
 
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JMFS125G08-           GCCGGTCTTCGCACATTATTTATATATCTAAAATCCCTTAATCAATTTTTCTCTTAGTGT
                      ____________________________________________________________
consensus             GCCGGTCTTCGCACATTATTTATATATCTAAAATCCCTTAATCAATTTTTCTCTTAGTGT
 
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JMFS125G08-           CTCTCTCTCGTTCCTTGCAAATCCGACGGTTGACGAAGAAGCCAACGCCTTCCGCCCTCT
                      ____________________________________________________________
consensus             CTCTCTCTCGTTCCTTGCAAATCCGACGGTTGACGAAGAAGCCAACGCCTTCCGCCCTCT
 
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JMFS125G08-           CCTGCGAATCTACGATGAAGATGATAAACGATAACAAAGCAAGCAGAAGCCACGGTGGAC
                      ____________________________________________________________
consensus             CCTGCGAATCTACGATGAAGATGATAAACGATAACAAAGCAAGCAGAAGCCACGGTGGAC
 
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JMFS125G08-           GACGAAGCTAGAAGTCGACGCCTCTGCCCCCCGCCTTCCCCTGCGAATCTGCGAATCTGG
                      ____________________________________________________________
consensus             GACGAAGCTAGAAGTCGACGCCTCTGCCCCCCGCCTTCCCCTGCGAATCTGCGAATCTGG
 
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JMFS125G08-           TGCTACTTCAGAGTGCAATTAGGGTTATGAGCTAATCTATGAATACATTCTCTCCACCAG
                      ____________________________________________________________
consensus             TGCTACTTCAGAGTGCAATTAGGGTTATGAGCTAATCTATGAATACATTCTCTCCACCAG
 
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JMFS125G08-           AAGTGATGCTTTTCCAGGAAGGTGGTTCCTACAATATATACAAATATCAGAGGGGCCACA
                      ____________________________________________________________
consensus             AAGTGATGCTTTTCCAGGAAGGTGGTTCCTACAATATATACAAATATCAGAGGGGCCACA
 
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JMFS125G08-           AAATAAACTCAAATCAGTGACTGAGCATTATAAGAGTACCGAACCTGGTTACTTTAATTT
rJMSF006I02+                       TCAGTGACTGAGCATTATAAGAGTACCGAACCTGGTCACTTTAATTT
rJMFF029M19+                       TCAGTGACTGAGCATTATAAGAGTACCGAACCTGGTCACTTTAATTT
                      ____________________________________________________________
consensus             AAATAAACTCAAATCAGTGACTGAGCATTATAAGAGTACCGAACCTGGTCACTTTAATTT
 
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JMFS125G08-           AAATCC-GGAGTTTTTTTCTTCTACGATCTTTCTCCCATCAAG                 
rJMSF006I02+          AAATCCGGGAGTTTTCTTCTTCTATGATCTTTCTCCTATCAAGGTGACCTTTACGGAGGA
rJMFF020G21+                                                               CGGAGGA
rJMFF029M19+          AAATCCGGGAGTTTTCTTCTTCTATGATCTTTCTCCTATCAAGGTGACCTTTACGGAGGA
                      ____________________________________________________________
consensus             AAATCCGGGAGTTTTCTTCTTCTATGATCTTTCTCCTATCAAGGTGACCTTTACGGAGGA
 
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rJMSF006I02+          GCACATTCCATTCCTTCATTTCCTCACAAGCGTTTGTGCAATAATCGGCGGTATCTTCAC
rJMCP007A08-                                           TATAGGTCGCGCGCTTAAGCGCCATCC
rJMFF020G21+          GCACATTCCATTCCTTCATTTCCTCACAAGNGTTTGTGCAATNATNGGCGGTATCTTNNC
rJMFF029M19+          GCACATTCCATTCCTTCATTTCCTCACAAGCGTTTGTGCAATAATCGGCGGTATCTTCAC
                      ____________________________________________________________
consensus             GCACATTCCATTCCTTCATTTCCTCACAAGCGTTTGTGCAATAATCGGCGGTATCTTCAC
 
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rJMSF006I02+          AATTGCGGGGCTAGTTGATTCATTTGTTTACCATGGCCAAAAAGCGATAAAGAAGAAGAT
rJMCP007A08-          ATTTTCGGGGCTAGTTGATTCATTTGTTTACCATGGCCAAAAAGCGATAAAGAAGAAGAT
rJMFF020G21+          AATTGCGGGGNTAGTTGATTCATTNGTTTACCATGGCCAAAAAGCGATAAAGAAGAAGAT
rJMFF029M19+          AATTGCGGGGCTAGTTGATTCATTTGTTTACCATGGCCAAAAAGCGATAAAGAAGAAGAT
                      ____________________________________________________________
consensus             AATTGCGGGGCTAGTTGATTCATTTGTTTACCATGGCCAAAAAGCGATAAAGAAGAAGAT
 
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rJMSF006I02+          TGAGCTTGGAAAATTCACCTGAGGGAGCATTCCAGCCTGCTTCATCATGTGCATCCTCTA
rJMCP007A08-          TGAGCTTGGAAAATTCACCTGAGGGAGCATTCCAGCCTGCTTCATCATGTGCATCCTCTA
rJMFF020G21+          TGAGCTNGGAAAATTCNCCTGNGGGAGCATTCCAGCNTGGTTCATCATGTGCATCCTGTA
rJMFF029M19+          TGAGCTTGGAAAATTCACCTGAGGGAGCATTCCAGCCTGCTTCATCATGTGCATCCTCTA
                      ____________________________________________________________
consensus             TGAGCTTGGAAAATTCACCTGAGGGAGCATTCCAGCCTGCTTCATCATGTGCATCCTCTA
 
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rJMSF006I02+          TTGAGGAAGGAGTTTTTACACTCTAGATTTACAGCTTCTGTAACCAGTTTTAGCCAATCA
rJMCP007A08-          TTGAGGAAGGAGTTTTTACACTCTAGATTTACAGCTTCTGTAACCAGTTTTAGCCAATCA
rJMFF020G21+          NTGAGGAAGGAGTTTNTACACTNTAGATNTACANNTTCTGTAACCAGTNTTAGNCAATCA
rJMFF029M19+          TTGAGGAAGGAGTTTTTACACTCTAGATTTACAGCTTCTGTAACCAGTTTTAGCCAATCA
                      ____________________________________________________________
consensus             TTGAGGAAGGAGTTTTTACACTCTAGATTTACAGCTTCTGTAACCAGTTTTAGCCAATCA
 
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rJMSF006I02+          TCATTCCGGTNNGATACTAAACCAGATTTTGCTATCTCTAATCCTAGTCATCTGTCATCT
rJMCP007A08-          TCATTCCGGTTTGATACTAAACCAGATTTTGCTATCTCTAATCCTAGTCATCTGTCATCT
rJMFF020G21+          TCATTCCGGT                                                  
rJMFF029M19+          TCATTCCGGTTTGATACTAAACCAGATTTTGCTATCTCTAATCCTAGTCATCTGTCATCT
                      ____________________________________________________________
consensus             TCATTCCGGTTTGATACTAAACCAGATTTTGCTATCTCTAATCCTAGTCATCTGTCATCT
 
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rJMSF006I02+          ACTATTGTT                                                   
rJMCP007A08-          ACTATTGTTTTGATGTTGGAATCTGTTTAAATGATATGCCATAGTTCTTTGATAACTC  
rJMFF029M19+          ACTATTGTTTTGATGTTGGAATCTGTTTAAATGATATGCCATAGTTCTTTGATAACTCTA
                      ____________________________________________________________
consensus             ACTATTGTTTTGATGTTGGAATCTGTTTAAATGATATGCCATAGTTCTTTGATAACTCTA
 
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rJMFF029M19+          TCTCATGTCCCAACTCCCATCTGTAATTCTAGCAAACGTCTTGTTAAAATGCATGCATGG
                      ____________________________________________________________
consensus             TCTCATGTCCCAACTCCCATCTGTAATTCTAGCAAACGTCTTGTTAAAATGCATGCATGG
 
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rJMFF029M19+          TTTGTGACTCTGCGCGCGCGTATATGTGACTTTTACGGTGGTGATCAGTATTAATGCCAA
                      ____________________________________________________________
consensus             TTTGTGACTCTGCGCGCGCGTATATGTGACTTTTACGGTGGTGATCAGTATTAATGCCAA