Contig 006878:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029J13Sequence407002141 (3)sp|Q6T7E8.1|PURA_TOBAC6e-37RecName: Full=Adenylosuccinate synthetase, chloroplastic; Short=AMPSase; Short=767006878 (3)emb|CDP10068.1|1e-91unnamed protein product [Coffea canephora]
JMFF040H18Sequence596002141 (3)sp|Q6T7E8.1|PURA_TOBAC6e-79RecName: Full=Adenylosuccinate synthetase, chloroplastic; Short=AMPSase; Short=710006878 (3)emb|CDP10068.1|2e-102unnamed protein product [Coffea canephora]
JMSF012F16Sequence453002141 (3)sp|Q6T7E8.1|PURA_TOBAC1e-36RecName: Full=Adenylosuccinate synthetase, chloroplastic; Short=AMPSase; Short=769006878 (3)emb|CDP10068.1|1e-96unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF040H18+ TAGGGTTGTTGGTGACNTTATCGGAGTGGTTAAA
rJMSF012F16+ TAAA
                      ____________________________________________________________
consensus TAGGGTTGTTGGTGACNTTATCGGAGTGGTTAAA
 
. : . : . : . : . : . :
rJMFF040H18+ GCATACACCACAAGGGTTGGTTCAGGTCCTTTCCCAACAGAAATCTTGGGTAAAGGTGGT
rJMSF012F16+ GCATACACCACAAGGGTTGGTTCAGGTCCTTTCCCAACAGAAATCTTGGGTAAAGGTGGT
rJMFF029J13+ GGGTTGGTTCAGGTCCTTTCCCAACAGAAATCTTGGGTAAAGGTGGT
                      ____________________________________________________________
consensus GCATACACCACAAGGGTTGGTTCAGGTCCTTTCCCAACAGAAATCTTGGGTAAAGGTGGT
 
. : . : . : . : . : . :
rJMFF040H18+ GACTTGCTTCGGTTTGCTGGGCAAGAGTTTGGAACAACAACTGGTCGCCCTCGTCGCTGT
rJMSF012F16+ GACTTGCTTCGGTTTGCTGGGCAAGAGTTTGGAACAACAACTGGTCGCCCTCGTCGCTGT
rJMFF029J13+ GACTTGCTTCGGTTTGCTGGGCAAGAGTTTGGAACAACAACTGGTCGCCCTCGTCGCTGT
                      ____________________________________________________________
consensus GACTTGCTTCGGTTTGCTGGGCAAGAGTTTGGAACAACAACTGGTCGCCCTCGTCGCTGT
 
. : . : . : . : . : . :
rJMFF040H18+ GGCTGGCTTGACATAGTTGCTTTGAAATACTGCTGCCAGATAAATGGATTTTCCTCTCTG
rJMSF012F16+ GGCTGGCTTGACATAGTTGCTTTGAAATACTGCTGCCAGATAAATGGATTTTCCTCTCTG
rJMFF029J13+ GGCTGGCTTGACATAGTTGCTTTGAAATACTGCTGCCAGATAAATGGATTTTCCTCTCTG
                      ____________________________________________________________
consensus GGCTGGCTTGACATAGTTGCTTTGAAATACTGCTGCCAGATAAATGGATTTTCCTCTCTG
 
. : . : . : . : . : . :
rJMFF040H18+ AACCTCACTAAACTTGATGTATTATCAGAACTTCCAGAAATTGAGATTGGTGTTTCTTAC
rJMSF012F16+ AACCTCACTAAACTTGATGTATTATCAGAACTTCCAGAAATTGAGATTGGTGTTTCTTAC
rJMFF029J13+ AACCTCACTAAACTTGATGTATTATCAGAACTTCCAGAAATTGAGATTGGTGTTTCTTAC
                      ____________________________________________________________
consensus AACCTCACTAAACTTGATGTATTATCAGAACTTCCAGAAATTGAGATTGGTGTTTCTTAC
 
. : . : . : . : . : . :
rJMFF040H18+ AAACAACTTGATGGTTCACCAATCAGATCATTCCCTGCAGATCTTAGAATCCTTGATCAA
rJMSF012F16+ AAACAACTTGATGGTTCACCAATCAGATCATTCCCTGCAGATCTTAGAATCCTTGATCAA
rJMFF029J13+ AAACAACTTGATGGTTCACCAATCAGATCATTCCCTGCAGATCTTAGAATCCTTGATCAA
                      ____________________________________________________________
consensus AAACAACTTGATGGTTCACCAATCAGATCATTCCCTGCAGATCTTAGAATCCTTGATCAA
 
. : . : . : . : . : . :
rJMFF040H18+ GTTAAGGTGGAATACGAAGTTTTGCCTGGTTGGAAGTCTGACATTTCCTCTGTCCGAAAG
rJMSF012F16+ GTTAAGGTGGAATACGAAGTTTTGCCTGGTTGGAAGTCTGACATTTCCTCTGTCCGAAAG
rJMFF029J13+ GTTAAGGTGGAATACGAAGTTTTGCCTGGTTGGAAGTCTGACATTTCCTCTGTCCGAAAG
                      ____________________________________________________________
consensus GTTAAGGTGGAATACGAAGTTTTGCCTGGTTGGAAGTCTGACATTTCCTCTGTCCGAAAG
 
. : . : . : . : . : . :
rJMFF040H18+ TATTCTGAACTTCCTTCAGCTGCACGACAATATGTAGAAAGGATAGAGGAGCTTGTTGGT
rJMSF012F16+ TATTCTGAACTTCCTTCAGCTGCACGACAATATGTAGAAAGGATAGAGGAGCTTGTTGGT
rJMFF029J13+ TATTCTGAACTTCCTTCAGCTGCACGACAATATGTAGAAAGGATAGAGGAGCTTGTTGGT
                      ____________________________________________________________
consensus TATTCTGAACTTCCTTCAGCTGCACGACAATATGTAGAAAGGATAGAGGAGCTTGTTGGT
 
. : . : . : . : . : . :
rJMFF040H18+ GTACCTGTCCATTACATTGGAGTTGGACCCGGACGCAATGCCCTGATATACAAGTGATTT
rJMSF012F16+ GTACCTGTCCATTACATTGGAGTTGGACCCGGACGCAATGCCCTGATATACAAGTGATTT
rJMFF029J13+ GTACCTGTCCATTACATTGGAGTTGGACCCGGACGCAATGCCCTGATATACAAGTGATTT
                      ____________________________________________________________
consensus GTACCTGTCCATTACATTGGAGTTGGACCCGGACGCAATGCCCTGATATACAAGTGATTT
 
. : . : . : . : . : . :
rJMFF040H18+ TAAGCTCAAACTTTTTATCACCAAAGTTGATTCTAATATCATGGAGGACAGGTTGTGGCA
rJMSF012F16+ TAAGCTCAAACTTTTTATCACCAAAGTTGATTCTAATATCATGGAGGACAGGTTGTGGCA
rJMFF029J13+ TAAGCTCAAACTTTTTATCACCAAAGTTGATTCTAATATCATGGAGGACAGGTTGTGGCA
                      ____________________________________________________________
consensus TAAGCTCAAACTTTTTATCACCAAAGTTGATTCTAATATCATGGAGGACAGGTTGTGGCA
 
. : . : . : . : . : . :
rJMFF040H18+ TCCTTTAAGCCGGTCAGCCAAACTTTTATTCATCTTGGGAATATCAATTTGACACCACAA
rJMSF012F16+ TCCTTTAAGCCGGTCAGCCAAACTTTTATTCATCTTGGGAATATCAATTTGACACCACAA
rJMFF029J13+ TCCTTTAAGCCGGTCAGCCAAACTTTTATTCATCTTGGGAATATCAATTTGACACCACAA
                      ____________________________________________________________
consensus TCCTTTAAGCCGGTCAGCCAAACTTTTATTCATCTTGGGAATATCAATTTGACACCACAA
 
. : . : . : . : . : . :
rJMFF040H18+ TGTTGTACTATCAGTCATGCGGTCTTCATGCATATTCAGAGACCGATCATTACTTATGCT
rJMSF012F16+ TGTTGTACTATCAGTCATGCGGTCTTCATGCATATTCAGAGACCGATCATTACTTATGCT
rJMFF029J13+ TGTTGTACTATCAGTCATGCGGTCTTCATGCATATTCAGAGACCGATCATTACTTATGCT
                      ____________________________________________________________
consensus TGTTGTACTATCAGTCATGCGGTCTTCATGCATATTCAGAGACCGATCATTACTTATGCT
 
. : . : . : . : . : . :
rJMFF040H18+ CTTATGAGTTTCCT
rJMSF012F16+ CTTATGAGTTTCCTTTCATTTTCTTTGTAAGTTATTGTTATCTTTCAAGCTAAACTTTAG
rJMFF029J13+ CTTATGAGTTTCCTTTCATTTTCTTTGTAAGTTATTGTTATCTTTCAAGCTAAACTTTAG
                      ____________________________________________________________
consensus CTTATGAGTTTCCTTTCATTTTCTTTGTAAGTTATTGTTATCTTTCAAGCTAAACTTTAG
 
. : . : . : . : . : . :
rJMSF012F16+ ATGGTATTGGCGTATTGCTGCT
rJMFF029J13+ ATGGTATTGGCGTATTGCTGCTTAAACGCCTCCAATGCTTTACTTATTAAATAAAGGAGA
                      ____________________________________________________________
consensus ATGGTATTGGCGTATTGCTGCTTAAACGCCTCCAATGCTTTACTTATTAAATAAAGGAGA