Contig 006871:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027C18Sequence496007873 (3)ref|XP_009768551.1|3e-36PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana757006871 (3)ref|XP_010271641.1|1e-77PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Nelu
JMSF012J07Sequence250007873 (3)775006871 (3)ref|XP_010683711.1|9e-72PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Beta vulg
JMSF021G03Sequence695007873 (3)ref|XP_009768551.1|3e-70PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana759006871 (3)ref|XP_010271641.1|1e-80PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Nelu

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF012J07+ CCAAGAA
                      ____________________________________________________________
consensus CCAAGAA
 
. : . : . : . : . : . :
rJMSF012J07+ GTTATGCGGCAAGAAGAAGCTGAAGAGTTACAGAAGAAGATCATGAGTGCTAAATTTTGA
rJMSF021G03+ AAGAAGAAGCTGAAGAGTTACAGAAGAAGATCATGAGTGCTAAA-TTTGA
rJMFF027C18+ GAAGAGTTATAGAAGAAGATCATGAGTGCTAAA-TTTGA
                      ____________________________________________________________
consensus GTTATGCGGCAAGAAGAAGCTGAAGAGTTACAGAAGAAGATCATGAGTGCTAAA-TTTGA
 
. : . : . : . : . : . :
rJMSF012J07+ CTTCAATGACTTCCTCAAGCAAACCCGTGCAATTGCACAGATGGGTTCCATGGCTCAGGT
rJMSF021G03+ CTTCAATGACTTCCTCAAGCAAACCCGTGCAATTGCACAGATGGGTTCCATGGCTCAGGT
rJMFF027C18+ CTTCAATGACTTCCTCAAGCAAACCCGTGCAATTGCACAGATGGGTTCCATGGCTCAGGT
                      ____________________________________________________________
consensus CTTCAATGACTTCCTCAAGCAAACCCGTGCAATTGCACAGATGGGTTCCATGGCTCAGGT
 
. : . : . : . : . : . :
rJMSF012J07+ TATCGGAATGGTTCCTGGCATGTCTAAGGTAACTCCTGCACAAATTCGACAGGCAGAAAA
rJMSF021G03+ TATCGGAATGGTTCCTGGCATGTCTAAGGTAACTCCTGCACAAATTCGACAGGCAGAAAA
rJMFF027C18+ TATCGGAATGGTTCCTGGCATGTCTAAGGTAACTCCTGCACAAATTCGACAGGCAGAAAA
                      ____________________________________________________________
consensus TATCGGAATGGTTCCTGGCATGTCTAAGGTAACTCCTGCACAAATTCGACAGGCAGAAAA
 
. : . : . : . : . : . :
rJMSF012J07+ GAACTTTAAGATGATGGAATCAATGATAGAAGCAATGACCCCTGAGGAGAGGGAGAATCC
rJMSF021G03+ GAACTTTAAGATGATGGAATCAATGATAGAAGCAATGACCCCTGAGGAGAGGGAGAATCC
rJMFF027C18+ GAACTTTAAGATGATGGAATCAATGATAGAAGCAATGACCCCTGAGGAGAGGGAGAATCC
                      ____________________________________________________________
consensus GAACTTTAAGATGATGGAATCAATGATAGAAGCAATGACCCCTGAGGAGAGGGAGAATCC
 
. : . : . : . : . : . :
rJMSF012J07+ GGAGCTGTTAGCCAGCAATCCAGTTAGGAGGAGACGCATTGCTCAAGATTCTGGAAGAAC
rJMSF021G03+ GGAGCTGTTAGCCAGCAATCCAGTTAGGAGGAGACGCATTGCTCAAGATTCTGGAAGAAC
rJMFF027C18+ GGAGCTGTTAGCCAGCAATCCAGTTAGGAGGAGACGCATTGCTCAAGATTCTGGAAGAAC
                      ____________________________________________________________
consensus GGAGCTGTTAGCCAGCAATCCAGTTAGGAGGAGACGCATTGCTCAAGATTCTGGAAGAAC
 
. : . : . : . : . : . :
rJMSF012J07+ TGAGCAACAGGTGAGTCAAGTAATCGCTCAATTTTTCCAAGTGCGTGCTCGTATGAAGAA
rJMSF021G03+ TGAGCAACAGGTGAGTCAAGTAATCGCTCAATTTTTCCAAGTGCGTGCTCGTATGAAGAA
rJMFF027C18+ TGAGCAACAGGTGAGTCAAGTAATCGCTCAATTTTTCCAAGTGCGTGCTCGTATGAAGAA
                      ____________________________________________________________
consensus TGAGCAACAGGTGAGTCAAGTAATCGCTCAATTTTTCCAAGTGCGTGCTCGTATGAAGAA
 
. : . : . : . : . : . :
rJMSF012J07+ TATGATGGGCGCAATGGAGGGTGGATCTGTTTCTAACTTTGAAGAGGCAATGCAATTTGA
rJMSF021G03+ TATGATGGGCGCAATGGAGGGTGGATCTGTTTCTAACTTTGAAGAGGCAATGCAATTTGA
rJMFF027C18+ TATGATGGGCGCAATGGAGGGTGGATCTGTTTCTAACTTTGAAGAGGCAATGCAATTTGA
                      ____________________________________________________________
consensus TATGATGGGCGCAATGGAGGGTGGATCTGTTTCTAACTTTGAAGAGGCAATGCAATTTGA
 
. : . : . : . : . : . :
rJMSF012J07+ ACAGCAGTCCACTGCTGGAACTGCAAAGAGGAAGCAGAAATCGAAATCTAGGAAGCTATT
rJMSF021G03+ ACAGCAGTCCACTGCTGGAACTGCAAAGAGGAAGCAGAAATCGAAATCTAGGAAGCTATT
rJMFF027C18+ ACAGCAGTCCACTGCTGGAACTGCAAAGAGGAAGCAGAAATCGAAATCTAGGAAGCTATT
                      ____________________________________________________________
consensus ACAGCAGTCCACTGCTGGAACTGCAAAGAGGAAGCAGAAATCGAAATCTAGGAAGCTATT
 
. : . : . : . : . : . :
rJMSF012J07+ TACAGAGTCAGCATCGACAAGACCAAGCGCTCGTGGCTTTGGGGCCAAATAGGGAACTAT
rJMSF021G03+ TACAGAGTCAGCATCGACAAGACCAAGCGCTCGTGGCTTTGGGGCCAAATAGGGAACTAT
rJMFF027C18+ TACAGAGTCAGCATCGACAAGACCAAGCGCTCGTGGCTTTGGGGCCAAATAGGGAACTAT
                      ____________________________________________________________
consensus TACAGAGTCAGCATCGACAAGACCAAGCGCTCGTGGCTTTGGGGCCAAATAGGGAACTAT
 
. : . : . : . : . : . :
rJMSF012J07+ GTTTTCCATAATAATTGAAGATCTGATCTGGTCTCTTTTGCTGATATGGTCCAGTTATAG
rJMSF021G03+ GTTTTCCATAATAATTGAAGATCTGATCTGGTCTCTTTTGCTGATATGGTCCAGTTATAG
rJMFF027C18+ GTTTTCCATAATAATTGAAGATCTGATCTGGTCTCTTTTGCTGATATGGTCCAGTTATAG
                      ____________________________________________________________
consensus GTTTTCCATAATAATTGAAGATCTGATCTGGTCTCTTTTGCTGATATGGTCCAGTTATAG
 
. : . : . : . : . : . :
rJMSF012J07+ TCTGAAAGACACAGTTTACTGAGTCTCCTCTAATCAAGCTTTAACACTATCTTTCTGGGG
rJMSF021G03+ TCTGAAAGACACAGTTTACTGAGTCTCCTCTAATCAAGCTTTAACACTATCTTTCTGGGG
rJMFF027C18+ TCTGAAAGACACAGTTTACTGAGTCTCCTCTAATCAAGCTTTAACACTATCTTTCTGGGG
                      ____________________________________________________________
consensus TCTGAAAGACACAGTTTACTGAGTCTCCTCTAATCAAGCTTTAACACTATCTTTCTGGGG
 
. : . : . : . : . : . :
rJMSF012J07+ ATGGAGAAAAGAGGCAGAAAAAGAAAAGCCACTCCATATAAGCTGAATGTTATCTATCCC
rJMSF021G03+ ATGGAGAAAAGAGGCAGAAAAAGAAAAGCCACTCCATATAAGCTGAATGTTATCTATCCC
rJMFF027C18+ ATGGAGAAAAGAGGCAGAAAAAGAAAAGCCACTCCATATAAGCTGAATGTTATCTATCCC
                      ____________________________________________________________
consensus ATGGAGAAAAGAGGCAGAAAAAGAAAAGCCACTCCATATAAGCTGAATGTTATCTATCCC
 
. : . : . : . : . : . :
rJMSF012J07+ CTTGCCTGTTCTGTTATTTCATACCTTGAATTCCTTCATGCTACTGCT
rJMSF021G03+ CTTGCCTGTTCTGTTATTTCATA-CTTGAATTCCTTCATGCTACTGCT
rJMFF027C18+ CTTGCCTGTTCTGTTATTTCATA-CTTGAATTCCTTCATGCTACTGCTACATGTACATCT
                      ____________________________________________________________
consensus CTTGCCTGTTCTGTTATTTCATA-CTTGAATTCCTTCATGCTACTGCTACATGTACATCT