| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF020O11 | Sequence | 549 | 010256 (3) | ref|XP_009804576.1| | 4e-66 | PREDICTED: WD-40 repeat-containing protein MSI4-like [Nicotiana sylvestris] ref | 797 | 006848 (5) | gb|ABB54381.2| | 9e-83 | FVE [Ipomoea nil] |
| JMFF033B06 | Sequence | 392 | 010256 (3) | ref|XP_009804576.1| | 6e-39 | PREDICTED: WD-40 repeat-containing protein MSI4-like [Nicotiana sylvestris] ref | 803 | 006848 (5) | gb|ABB54381.2| | 8e-86 | FVE [Ipomoea nil] |
| JMSF012F05 | Sequence | 556 | 010622 (2) | ref|XP_009804576.1| | 1e-71 | PREDICTED: WD-40 repeat-containing protein MSI4-like [Nicotiana sylvestris] ref | 776 | 006848 (5) | ref|XP_006381682.1| | 2e-71 | WD-40 repeat protein MSI4 [Populus trichocarpa] gb|ERP59479.1| WD-40 repeat prot |
| JMSF015F10 | Sequence | 264 | 010256 (3) | ref|XP_009804576.1| | 7e-15 | PREDICTED: WD-40 repeat-containing protein MSI4-like [Nicotiana sylvestris] ref | 796 | 006848 (5) | gb|ABB54381.2| | 6e-90 | FVE [Ipomoea nil] |
| JMSF031B13 | Sequence | 695 | 010622 (2) | ref|XP_009804576.1| | 8e-86 | PREDICTED: WD-40 repeat-containing protein MSI4-like [Nicotiana sylvestris] ref | 737 | 006848 (5) | ref|XP_006381682.1| | 2e-67 | WD-40 repeat protein MSI4 [Populus trichocarpa] gb|ERP59479.1| WD-40 repeat prot |
This contig is upended
. : . : . : . : . : . :
rJMSF031B13+ TATGGGATGC
rJMSF012F05+ GATGATTCGTGCCTCATCCTATGGGATGC
____________________________________________________________
consensus GATGATTCGTGCCTCATCCTATGGGATGC
. : . : . : . : . : . :
rJMSF031B13+ TCGAGTTGGTCCTAATCCAGCTGTAAAGGTTGAAAAAGCTCATAATGCAGATCTTCACTG
rJMSF012F05+ TCGAGTTGGTCCTAATCCAGCTGTAAAGGTTGAAAAAGCTCATAATGCAGATCTTCACTG
rJMSF015F10+ TCCAGCTGTAAAGGTTGAAAAAGCTCATAATGCAGATCTTCACTG
rJMFF033B06+ TGAAAAAGCTCATAATGCAGATCTTCACTG
rJMFF020O11+ TAATGCAGATCTTCACTG
____________________________________________________________
consensus TCGAGTTGGTCCTAATCCAGCTGTAAAGGTTGAAAAAGCTCATAATGCAGATCTTCACTG
. : . : . : . : . : . :
rJMSF031B13+ TGTTGACTGGAATCCTCATGATGACAATCTTATAATAACTGGCTCTGCAGATAATTCTGT
rJMSF012F05+ TGTTGACTGGAATCCTCATGATGACAATCTTATAATAACTGGCTCTGCAGATAATTCTGT
rJMSF015F10+ TGTTGACTGGAATCCTCATGATGACAATCTTATAATAACTGGCTCTGCAGATAATTCTGT
rJMFF033B06+ TGTNGACTGGAATCCTCATGATGACAATCTTATAATAACTGGCTCTGCAGATAATTCTGT
rJMFF020O11+ TGTTGACTGGAATCCTCATGATGACAATCTTATAATAACTGGCTCTGCAGATAATTCTGT
____________________________________________________________
consensus TGTTGACTGGAATCCTCATGATGACAATCTTATAATAACTGGCTCTGCAGATAATTCTGT
. : . : . : . : . : . :
rJMSF031B13+ CTGCTTGTTTGATAGACGTAGTTTAACTTCAAATGGAGTTGGTTCACCAATTCATATATT
rJMSF012F05+ CTGCTTGTTTGATAGACGTAGTTTAACTTCAAATGGAGTTGGTTCACCAATTCATATATT
rJMSF015F10+ CTGCTTGTTTGATAGACGTAGTTTAACTTCAAATGGAGTTGGTTCACCAATTCATATATT
rJMFF033B06+ CTGCTTGTTTGATAGACGTAGTTTAACTTCAAATGGAGTTGGTTCACCAATTCATATATT
rJMFF020O11+ CTGCTTGTTTGATAGACGTAGTTTAACTTCAAATGGAGTTGGTTCACCAATTCATATATT
____________________________________________________________
consensus CTGCTTGTTTGATAGACGTAGTTTAACTTCAAATGGAGTTGGTTCACCAATTCATATATT
. : . : . : . : . : . :
rJMSF031B13+ TCAACATCACAAAGCGGCAGTTTCTTTGTGTGCAGTGGTCTCCAGATAAGTCATCTGTTT
rJMSF012F05+ TCAACATCACAAAGCGGCAGTTTCTTTGTGTGCAGTGGTCTCCAGATAAGTCATCTGTTT
rJMSF015F10+ TCAACATCACAAAGCGGCAG-TTCTTTGTGTGCAGTGGTCTCCAGATAAGTCATCTGTTT
rJMFF033B06+ TCAACATCACAAAGCGGCAG-TTCTTTGTGTGCAGTGGTCTCCAGATAAGTCATCTGTTT
rJMFF020O11+ TCAACATCACAAAGCGGCAG-TTCTTTGTGTGCAGTGGTCTCCAGATAAGTCATCTGTTT
____________________________________________________________
consensus TCAACATCACAAAGCGGCAG-TTCTTTGTGTGCAGTGGTCTCCAGATAAGTCATCTGTTT
. : . : . : . : . : . :
rJMSF031B13+ TTGGGAGTTGTGCAGAGGATGGTCGACTTAATATTTGGGATTATGAGAAGGTTGGTGAGG
rJMSF012F05+ TTGGGAGTTGTGCAGAGGATGGTCGACTTAATATTTGGGATTATGAGAAGGTTGGTGAGG
rJMSF015F10+ TTGGGAGTTGTGCAGAGGATGGTCGACTTAATATTTGGGATTATGAGAAGGTTGGTGAGG
rJMFF033B06+ TTGGGATTTGTGCAGAGGATGGTCGACTTAATATTTGGGATTATGAGAAGGTTGGTGAGG
rJMFF020O11+ TTGGGATTTGTGCAGAGGATGGTCGACTTAATATTTGGGATTATGAGAAGGTTGGTGAGG
____________________________________________________________
consensus TTGGGAGTTGTGCAGAGGATGGTCGACTTAATATTTGGGATTATGAGAAGGTTGGTGAGG
. : . : . : . : . : . :
rJMSF031B13+ ATACTGAGACACCTGCTGCTGGCTTATTTTTCCAGCATGCTGGGCACAGGGATAAAGTTG
rJMSF012F05+ ATACTGAGACACCTGCTGCTGGCTTATTTTTCCAGCATGCTGGGCACAGGGATAAAGTTG
rJMSF015F10+ ATACTGAGACACCTGCTGCTGGCTTATTTTTCCAGCATGCTGGGCACAGGGATAAAGTTG
rJMFF033B06+ ATACTGAGACACCTGCTGCTGGCTTATTTTTCCAGCATGCTGGGCACAGGGATAAAGTTG
rJMFF020O11+ ATACTGAGACACCTGCTGCTGGCTTATTTTTCCAGCATGCTGGGCACAGGGATAAAGTTG
____________________________________________________________
consensus ATACTGAGACACCTGCTGCTGGCTTATTTTTCCAGCATGCTGGGCACAGGGATAAAGTTG
. : . : . : . : . : . :
rJMSF031B13+ TAGACTTCCAGTGGAATGCATCTGATCCATGGACAATTGTTAGCGTATCTGATGACTGTG
rJMSF012F05+ TAGACTTCCAGTGGAATGCATCTGATCCATGGACAATTGTTAGCGTATCTGATGACTGTG
rJMSF015F10+ TAGACTTCCAGTGGAATGCATCTGATCCATGGACAATTGTTAGCGTATCTGATGACTGTG
rJMFF033B06+ TAGACTTCCAGTGGAATGCATCTGATCCATGGACAATTGTTAGCGTATCTGATGACTGTG
rJMFF020O11+ TAGACTTCCAGTGGAATGCATCTGATCCATGGACAATTGTTAGCGTATCTGATGACTGTG
____________________________________________________________
consensus TAGACTTCCAGTGGAATGCATCTGATCCATGGACAATTGTTAGCGTATCTGATGACTGTG
. : . : . : . : . : . :
rJMSF031B13+ ACTCCAGTGGTAGAGGCGGTGGCACACTGCAGATATGGCGGATGCTTGATTTGCTGTATC
rJMSF012F05+ ACTCCAGTGGTAGAGGCGGTGGCACACTGCAGATATGGCGGATGCTTGATTTGCTGTATC
rJMSF015F10+ ACTCCAGTGGTAGAGGCGGTGGCACACTGCAGATATGGCGGATGCTTGATTTGCTGTATC
rJMFF033B06+ ACTCCAGTGGTAGAGGCGGTGGCACACTGCAGATATGGCGGATGCTTGATTTGCTGTATC
rJMFF020O11+ ACTCCAGTGGTAGAGGCGGTGGCACACTGCAGATATGGCGGATGCTTGATTTGCTGTATC
____________________________________________________________
consensus ACTCCAGTGGTAGAGGCGGTGGCACACTGCAGATATGGCGGATGCTTGATTTGCTGTATC
. : . : . : . : . : . :
rJMSF031B13+ GGCCTAAAGAGGAAGCTTTGGCAGAGCTCCAAAGGTTCAAAGACCATATTAGCAACTGTA
rJMSF012F05+ GGCCTAAAGAGGAAGCTTTGGCAGAGCTCCAAAGGTTCAAAGACCATATTAGCAACTGTA
rJMSF015F10+ GGCCTAAAGAGGAAGCTTTGGCAGAGCTCCAAAGGTTCAAAGACCATATTAGCAACTGTA
rJMFF033B06+ GGCCTAAAGAGGAAGCTTTGGCAGAGCTCCAAAGGTTCAAAGACCATATTAGCAACTGTA
rJMFF020O11+ GGCCTAAAGAGGAAGCTTTGGCAGAGCTCCAAAGGTTCAAAGACCATATTAGCAACTGTA
____________________________________________________________
consensus GGCCTAAAGAGGAAGCTTTGGCAGAGCTCCAAAGGTTCAAAGACCATATTAGCAACTGTA
. : . : . : . : . : . :
rJMSF031B13+ CTTCCAACCAAGCCTGAGCTGAGAGTCCTTCATGTCTGGTAGTCTGACTAATTGGTAATA
rJMSF012F05+ CTTCCAACCAAGCCTGAGCTGAGAGTCCTTCATGTCTGGTAGTCTGACTAATTGGTAATA
rJMSF015F10+ CTTCCAACCAAGCCTGAGCTGAGAGTCCTTCATGTCTGGTAGTCTGACTAATTGGTAATA
rJMFF033B06+ CTTCCAACCAAGCCTGAGCTGAGAGTCCTTCATGTCTGGTAGTCTGACTAATTGGTAATA
rJMFF020O11+ CTTCCAACCAAGCCTGAGCTGAGAGTCCTTCATGTCTGGTAGTCTGACTAATTGGTAATA
____________________________________________________________
consensus CTTCCAACCAAGCCTGAGCTGAGAGTCCTTCATGTCTGGTAGTCTGACTAATTGGTAATA
. : . : . : . : . : . :
rJMSF031B13+ ACCCCATAGCCCATAGGTCATAGCTAGTATTAGCTGCAGCAGTCAATTCTGCGAATTATA
rJMSF012F05+ ACCCCATAGCCCATAGGTCATAGCTAGTATTAGCTGCAGCAGTCAATTCTGCGAATTATA
rJMSF015F10+ ACCCCATAGCCCATAGGTCATAGCTAGTATTAGCTGCAGCAGTCAATTCTGCGAATTATA
rJMFF033B06+ ACCCCATAGCCCATAGGTCATAGCTAGTATTAGCTGCAGCAGTCAATTCTGCGAATTATA
rJMFF020O11+ ACCCCATAGCCCATAGGTCATAGCTAGTATTAGCTGCAGCAGTCAATTCTGCGAATTATA
____________________________________________________________
consensus ACCCCATAGCCCATAGGTCATAGCTAGTATTAGCTGCAGCAGTCAATTCTGCGAATTATA
. : . : . : . : . : . :
rJMSF031B13+ GGATTGGCGGTTGAGATTCTCATAACACCCAGATTGTCTACCAAATTTACCCACTCCGAT
rJMSF012F05+ GGATTGGCGGTTGAGATTCTCATAACACCCAGATTGTCTACCAAATTTACCCACTCCGAT
rJMSF015F10+ GGATTGGCGGTTGAGATTCTCATAACACCCAGATTGTCTACCAAATTTACCCACTCCGAT
rJMFF033B06+ GGATTGGCGGTTGAGATTCTCATAACACCCAGATTGTCTACCAAATTTACCCACTCCGAT
rJMFF020O11+ GGATTGGCGGTTGAGATTCTCATAACACCCAGATTGTCTACCAAATTTACCCACTCCGAT
____________________________________________________________
consensus GGATTGGCGGTTGAGATTCTCATAACACCCAGATTGTCTACCAAATTTACCCACTCCGAT
. : . : . : . : . : . :
rJMSF031B13+ AAGTCTT
rJMSF012F05+ AAGTCTTGAATTTTTTCATTGAGATAT
rJMSF015F10+ AAGTCTTGAATTTTTTCATTGAGATATTATTGCATTTGCAATTGAAAAGTGGGTTTTATG
rJMFF033B06+ AAGTCTTGAATTTTTTCATTGAGATATTATTGCATTTGCAATTGAAAAGTGGGTTTTATG
rJMFF020O11+ AAGTCTTGAATTTTTTCATTGAGATATTATTGCATTTGCAATTGAAAAGTGGGTTTTATG
____________________________________________________________
consensus AAGTCTTGAATTTTTTCATTGAGATATTATTGCATTTGCAATTGAAAAGTGGGTTTTATG
. : . : . : . : . : . :
rJMSF015F10+ GTCATTAGGTCTGCATGATCGGAAGACTTAT
rJMFF033B06+ GTCATTAGGTCTGCATGATCGGAAGACTTATCCATGGACTGATATAGGTAGAAA
rJMFF020O11+ GTCATTAGGTCTGCATGATCGGAAGACTTATCCATGGACTGATATAGGTAGAAAGAAAAA
____________________________________________________________
consensus GTCATTAGGTCTGCATGATCGGAAGACTTATCCATGGACTGATATAGGTAGAAAGAAAAA