Contig 006836:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016F22Sequence578022717ref|XP_006352240.1|5e-30PREDICTED: auxin response factor 9-like isoform X1 [Solanum tuberosum]713006836 (5)ref|XP_009764747.1|4e-56PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris]
JMFF018B11Sequence606002158 (4)emb|CDP12183.1|3e-17unnamed protein product [Coffea canephora]786006836 (5)ref|XP_009764747.1|2e-47PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris]
JMSF011D02Sequence366002158 (4)ref|XP_006343828.1|6e-08PREDICTED: auxin response factor 9-like [Solanum tuberosum]727006836 (5)ref|XP_009764747.1|2e-47PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris]
JMSF014F22Sequence229002158 (4)829006836 (5)ref|XP_009764747.1|4e-47PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris]
JMSF044A07Sequence782002158 (4)ref|XP_006343828.1|5e-52PREDICTED: auxin response factor 9-like [Solanum tuberosum]693006836 (5)ref|XP_009764747.1|2e-45PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF016F22+ GTCTGTTTATTCGAGCCAGGTGCCCCTACAGTTGGGTACTGCCTCGA
                      ____________________________________________________________
consensus GTCTGTTTATTCGAGCCAGGTGCCCCTACAGTTGGGTACTGCCTCGA
 
. : . : . : . : . : . :
rJMFF016F22+ CTTGTAGATTGTTTGGTATTGACTTGAAAAGTACCTCGGTGGTCTTAGTCCCCGAGATTC
                      ____________________________________________________________
consensus CTTGTAGATTGTTTGGTATTGACTTGAAAAGTACCTCGGTGGTCTTAGTCCCCGAGATTC
 
. : . : . : . : . : . :
rJMFF016F22+ CAAGGATAGCATGCAGTGGTGATTTGGAGCAAAAGTCCGACAATTCTGTACATTCCAAGG
rJMSF014F22+ GAGCAAAAGTCCGACAATTCTGTACATT-TAAGG
rJMFF018B11+ AAGG
                      ____________________________________________________________
consensus CAAGGATAGCATGCAGTGGTGATTTGGAGCAAAAGTCCGACAATTCTGTACATTCTAAGG
 
. : . : . : . : . : . :
rJMFF016F22+ ATTTGAAGCAAGAACAACAATCACTTGGCCGAGCAAAGGAGGGTAAAAACAAGCTCGGTT
rJMSF014F22+ ATTTGAAGCAAGAACAACAATCACTTGGCCGAGCAAAGGAGGGTAAAAACAAGCTCGGTT
rJMSF011D02+ AGCAAAGGAGGGTAAAAACAAGCTCGGTT
rJMFF018B11+ ATTTGAAGCAAGANCANCAATCACTTGGCCGAGCAAAGGAGGGTAAAAACAAGCTCGGTT
                      ____________________________________________________________
consensus ATTTGAAGCAAGAACAACAATCACTTGGCCGAGCAAAGGAGGGTAAAAACAAGCTCGGTT
 
. : . : . : . : . : . :
rJMFF016F22+ ACTCCACTAGAAGTCGCATCAAGGTTCAAATGCAAGGGGTGGCAGTGGGTCGTGCAGTGG
rJMSF044A07+ AGAAGTCGCATCAAGGTTCAAATGCAAGGGGTGGCAGTGGGTCGTGCAGTGG
rJMSF014F22+ ACTCCACTAGAAGTCGCATCAAGGTTCAAATGCAAGGGGTGGCAGTGGGTCGTGCAGTGG
rJMSF011D02+ ACTCCACTAGAAGTCGCATCAAGGTTCAAATGCAAGGGGTGGCAGTGGGTCGTGCAGTGG
rJMFF018B11+ ACTCCACTAGAAGTCGCATCAAGGTTCAAATGCAAGGGGTGGCAGTGGGTCGTGCAGTGG
                      ____________________________________________________________
consensus ACTCCACTAGAAGTCGCATCAAGGTTCAAATGCAAGGGGTGGCAGTGGGTCGTGCAGTGG
 
. : . : . : . : . : . :
rJMFF016F22+ ACTTGACAGCACTAAAGGGATACGATGAACTTATAGATGAACTCGAAGAGATGTTTGAAA
rJMSF044A07+ ACTTGACAGCACTAAAGGGATACGATGAACTTATAGATGAACTCGAAGAGATGTTTGAAA
rJMSF014F22+ ACTTGACAGCACTAAAGGGATACGATGAACTTATAGATGAACTCGAAGAGATGTTTGAAA
rJMSF011D02+ ACTTGACAGCACTAAAGGGATACGATGAACTTATAGATGAACTCGAAGAGATGTTTGAAA
rJMFF018B11+ ACTTGACAGCACTAAAGGGATACGATGAACTTATAGATGAACTCGAAGAGATGTTTGAAA
                      ____________________________________________________________
consensus ACTTGACAGCACTAAAGGGATACGATGAACTTATAGATGAACTCGAAGAGATGTTTGAAA
 
. : . : . : . : . : . :
rJMFF016F22+ TACAGGGAGAGCTTCACCCGAGGAAGAAATGGGAAATTGTCTTTACAGATGATGAGGGGG
rJMSF044A07+ TACAGGGAGAGCTTCACCCGAGGAAGAAATGGGAAATTGTCTTTACAGATGATGAGGGGG
rJMSF014F22+ TACAGGGAGAGCTTCACCCGAGGAAGAAATGGGAAATTGTCTTTACAGATGATGAGGGGG
rJMSF011D02+ TACAGGGAGAGCTTCACCCGAGGAAGAAATGGGAAATTGTCTTTACAGATGATGAGGGGG
rJMFF018B11+ TACAGGGAGAGCTTCACCCGAGGAAGAAATGGGAAATTGTCTTTACAGATGATGAGGGGG
                      ____________________________________________________________
consensus TACAGGGAGAGCTTCACCCGAGGAAGAAATGGGAAATTGTCTTTACAGATGATGAGGGGG
 
. : . : . : . : . : . :
rJMFF016F22+ ACATGATGCTTATGGGCGATCACCCATGGCTAGAATTCTGTACTGTGGTCAGAAAGATTC
rJMSF044A07+ ACATGATGCTTATGGGCGATCACCCATGGCTAGAATTCTGTACTGTGGTCAGAAAGATTC
rJMSF014F22+ ACATGATGCTTATGGGCGATCACCCATGGCTAGAATTCTGTACTGTGGTCAGAAAGATTC
rJMSF011D02+ ACATGATGCTTATGGGCGATCACCCATGGCTAGAATTCTGTACTGTGGTCAGAAAGATTC
rJMFF018B11+ ACATGATGCTTATGGGCGATCACCCATGGCTAGAATTCTGTACTGTGGTCAGAAAGATTC
                      ____________________________________________________________
consensus ACATGATGCTTATGGGCGATCACCCATGGCTAGAATTCTGTACTGTGGTCAGAAAGATTC
 
. : . : . : . : . : . :
rJMFF016F22+ TTATCTGTTCCAGTGCTGATGTGAAGAAAATGAGTTCTGGCATAGAAGCTATGTGATCAG
rJMSF044A07+ TTATCTGTTCCAGTGCTGATGTGAAGAAAATGAGTTCTGGCATAGAAGCTATGTGATCAG
rJMSF014F22+ TTATCTGTTCCAGTGCTGATGTGAAGAAAATGAGTTCTGGCATAGAAGCTATGTGATCAG
rJMSF011D02+ TTATCTGTTCCAGTGCTGATGTGAAGAAAATGAGTTCTGGCATAGAAGCTATGTGATCAG
rJMFF018B11+ TTATCTGTTCCAGTGCTGATGTGAAGAAAATGAGTTCTGGCATAGAAGCTATGTGATCAG
                      ____________________________________________________________
consensus TTATCTGTTCCAGTGCTGATGTGAAGAAAATGAGTTCTGGCATAGAAGCTATGTGATCAG
 
. : . : . : . : . : . :
rJMFF016F22+ GGTGAACATAGATAATGAAAATACAACTTTTGATGTCAGTTTCCTTAGGTTATTCTCTTA
rJMSF044A07+ GGTGAACATAGATAATGAAAATACAACTTTTGATGTCAGTTTCCTTAGGTTATTCTCTTA
rJMSF014F22+ GGTGAACATAGATAATGAAAATACAACTTTTGATGTCAGTTTCCTTAGGTTATTCTCTTA
rJMSF011D02+ GGTGAACATAGATAATGAAAATACAACTTTTGATGTCAGTTTCCTTAGGTTATTCTCTTA
rJMFF018B11+ GGTGAACATAGATAATGAAAATACAACTTTTGATGTCAGTTTCCTTAGATTATTCTCTTA
                      ____________________________________________________________
consensus GGTGAACATAGATAATGAAAATACAACTTTTGATGTCAGTTTCCTTAGGTTATTCTCTTA
 
. : . : . : . : . : . :
rJMFF016F22+ TAGTCTTATTTGCTCTCTCCCCCATGGTAAATAAAACACATTTGGCGGGGAGTTTGCAGG
rJMSF044A07+ TAGTCTTATTTGCTCTCTCCCCCATGGTAAATAAAACACATTTGGCGGGGAGTTTGCAGG
rJMSF014F22+ TAGTCTTATTTGCTCTCTCCCCCATGGTAAATAAAACACATTTGGCGGGGAGTTTGCAGG
rJMSF011D02+ TAGTCTTATTTGCTCTCTCCCCCATGGTAAATAAAACACATTTGGCGGGGAGTTTGCAGG
rJMFF018B11+ TAGTCTTATTTGCTCTCTCCCCCATGGTAAATAAAACACATTTGGCGGGGAGTTTGCAGG
                      ____________________________________________________________
consensus TAGTCTTATTTGCTCTCTCCCCCATGGTAAATAAAACACATTTGGCGGGGAGTTTGCAGG
 
. : . : . : . : . : . :
rJMFF016F22+ CTTTGTAGAACATTTTTCTTGTAGGGCTCGAGAAGGAGTTTCATTGTATGCCATCAAGAC
rJMSF044A07+ CTTTGTAGAACATTTTTCTTGTAGGGCTCGAGAAGGAGTTTCATTGTATGCCATCAAGAC
rJMSF014F22+ CTTTGTAGAACATTTTTCTTGTAGGGCTCGAGAAGGAGTTTCATTGTATGCCATCAAGAC
rJMSF011D02+ CTTTGTAGAACATTTTTCTTGTAGGGCTCGAGAAGGAGTTTCATTGTATGCCATCAAGAC
rJMFF018B11+ CTTTGTAGAACATTTTTCTTGTAGGGCTCGAGAAGGAGTTTCATTGTATGCCATCAAGAC
                      ____________________________________________________________
consensus CTTTGTAGAACATTTTTCTTGTAGGGCTCGAGAAGGAGTTTCATTGTATGCCATCAAGAC
 
. : . : . : . : . : . :
rJMFF016F22+ CGAAAT
rJMSF044A07+ CGAAATTAATGGGAAAATCAGAGTAGTGATCTTATTATTCTTGCTAGACGGCGGGGGGCT
rJMSF014F22+ CGAAATTAATGGGAAAATCAGAGTAGTGATCTTATTATTCTTGCTAGACGGC-GGGGGCT
rJMSF011D02+ CGAAATTAATGGGAAAATCAGAGTAGTGATCTTATTATTCTTGCTAGACGGCGGGGGGCT
rJMFF018B11+ CGAAATTAATGGGAAAATCAGAGTAGTGATCTTATTATTCTTGCTAGACGGCGGGGGGCT
                      ____________________________________________________________
consensus CGAAATTAATGGGAAAATCAGAGTAGTGATCTTATTATTCTTGCTAGACGGCGGGGGGCT
 
. : . : . : . : . : . :
rJMSF044A07+ CAGTTTCCAGAACAACTAAGAAATAGACATCATTTTAGTCACTGCAGAACTGATTTAGTA
rJMSF014F22+ CAGTTTCCAGAACAACTAAGAAATAGACATCATTTTAGTCACTGCAGAACTGATTTAGTA
rJMSF011D02+ CAGTTTCCAGAACAACTAAGAAATAGACATCATTTTAGTCACTGCAGAACTGATTTAGTA
rJMFF018B11+ CAGTTTCCAGAACAACTAAGAAATAGACATCATTTTAGTCACTGCATAACTGATTTAGTA
                      ____________________________________________________________
consensus CAGTTTCCAGAACAACTAAGAAATAGACATCATTTTAGTCACTGCAGAACTGATTTAGTA
 
. : . : . : . : . : . :
rJMSF044A07+ TTAGTAACTAGTGCAGGGGAACCAGTGGAATCTGTTGATATCTGAT--GAAGTAATTGTG
rJMSF014F22+ TTAGTAACTAGTGCAGGGGAACCAGTGGAATCTGTTGATATCTGAT--GAAGTAATTGTG
rJMSF011D02+ TTAGTAACTAGTGCAGGGGAACCAGTGGAATCTGTTGATATCTGATGAGAAGTAATTGTG
rJMFF018B11+ TTAGTAACTAGTGCAGGGGAACCAGTGGAATCTGTTGATATCTGATGAGAAGTAATTGTG
                      ____________________________________________________________
consensus TTAGTAACTAGTGCAGGGGAACCAGTGGAATCTGTTGATATCTGATGAGAAGTAATTGTG
 
. : . : . : . : . : . :
rJMSF044A07+ TTTTCCTGTATATATGTTTTGGGGTTTTGGTGGGTATC
rJMSF014F22+ TTTTCCTGTATATATGTTTTGGGGTTTTGGTGGGTATCTG
rJMSF011D02+ TTTTCCTGTATATATGTTTTGGGGTTTTGGTGGGTATC
rJMFF018B11+ TTTTCCTGTATATATGTTTTGGGGTTTTGGTGGGTATCTGTAACTGGAACTGGAAATGTT
                      ____________________________________________________________
consensus TTTTCCTGTATATATGTTTTGGGGTTTTGGTGGGTATCTGTAACTGGAACTGGAAATGTT