Contig 006813:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012F12Sequence527008756 (5)gb|KJB21756.1|9e-54hypothetical protein B456_004G012200 [Gossypium raimondii]808006813 (2)ref|XP_004235314.1|3e-19PREDICTED: E3 ubiquitin-protein ligase synoviolin [Solanum lycopersicum] ref|XP_
JMSF025D21Sequence642008756 (5)ref|XP_010662120.1|2e-89PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinife743006813 (2)ref|XP_004235314.1|2e-20PREDICTED: E3 ubiquitin-protein ligase synoviolin [Solanum lycopersicum] ref|XP_

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF025D21+ CCAGGGT
                      ____________________________________________________________
consensus CCAGGGT
 
. : . : . : . : . : . :
rJMSF025D21+ TCACAAGCTGATGGTGAGCGAAATAGCAATACTAACCAGCATCAAGCTAGGATACAAGCT
rJMFF012F12+ CCAGCATCAAGNTAGGATACAAGCT
                      ____________________________________________________________
consensus TCACAAGCTGATGGTGAGCGAAATAGCAATACTAACCAGCATCAAGCTAGGATACAAGCT
 
. : . : . : . : . : . :
rJMSF025D21+ GCTGCTGCTGCTGCTTCAATATATGGGAAATCTTTTGTTTATACTAACACTCCCTCACAT
rJMFF012F12+ GCTGCTGCTGCTGCTTCAATATATGGGAAATCTTTTGTTTATACTAACACTCCCTCACAT
                      ____________________________________________________________
consensus GCTGCTGCTGCTGCTTCAATATATGGGAAATCTTTTGTTTATACTAACACTCCCTCACAT
 
. : . : . : . : . : . :
rJMSF025D21+ GCACAATTGTGGTCCCCTGGATTTGCCTTGCGTCCTCCCCCCAATAAACCTTCAGATGGC
rJMFF012F12+ GCACAATTGTGGTCCCCTGGATTTGCCTTGCGTCCTCCCCCCAATAAACCTTCAGATGGC
                      ____________________________________________________________
consensus GCACAATTGTGGTCCCCTGGATTTGCCTTGCGTCCTCCCCCCAATAAACCTTCAGATGGC
 
. : . : . : . : . : . :
rJMSF025D21+ TCTGCTAGTGTAAGCTCAGGCGGTGAGCATGCTCTGGGTGAACATTCACAGCCACGTCAG
rJMFF012F12+ TCTGCTAGTGTAAGCTCAGGCGGTGAGCATGCTCTGGGTGAACATTCACAGCCACGTCAG
                      ____________________________________________________________
consensus TCTGCTAGTGTAAGCTCAGGCGGTGAGCATGCTCTGGGTGAACATTCACAGCCACGTCAG
 
. : . : . : . : . : . :
rJMSF025D21+ TTCGCAAACGCAAGCTTTACTCAGTTTCCACAGTATACTTTTGTTCCCTTCCAACTTCCT
rJMFF012F12+ TTCGCAAACGCAAGCTTTACTCAGTTTCCACAGTATACTTTTGTTCCCTTCCAACTTCCT
                      ____________________________________________________________
consensus TTCGCAAACGCAAGCTTTACTCAGTTTCCACAGTATACTTTTGTTCCCTTCCAACTTCCT
 
. : . : . : . : . : . :
rJMSF025D21+ GGGCACGCTGACATTGGATCTAGCAGTGGCCCCCCTACTTGAGATATGCATCCCGAGGTT
rJMFF012F12+ GGGCACGCTGACATTGGATCTAGCAGTGGCCCCCCTACTGGAGATATGCATCCCGAGGTT
                      ____________________________________________________________
consensus GGGCACGCTGACATTGGATCTAGCAGTGGCCCCCCTACTTGAGATATGCATCCCGAGGTT
 
. : . : . : . : . : . :
rJMSF025D21+ AAGAAGAAAGTCATTGAAGAACAAATTAAGGCTCTGCAACACGAGCTCACTCTTCTACAT
rJMFF012F12+ AAGAAGAAAGTCATTGAAGAACAAATTAAGGCTCTGCAACACGAGCTCACTCTTCTACAT
                      ____________________________________________________________
consensus AAGAAGAAAGTCATTGAAGAACAAATTAAGGCTCTGCAACACGAGCTCACTCTTCTACAT
 
. : . : . : . : . : . :
rJMSF025D21+ AAGCCAAATACCGAGAACAAGACTGCTTCTACAGAAACTTGCGACGGCAAGGGAAAAGCC
rJMFF012F12+ AAGCCAAATACCGAGAACAAGACTGCTTCTACAGAAACTTGCGACGGCAAGGGAAAAGCC
                      ____________________________________________________________
consensus AAGCCAAATACCGAGAACAAGACTGCTTCTACAGAAACTTGCGACGGCAAGGGAAAAGCC
 
. : . : . : . : . : . :
rJMSF025D21+ GTGTCCTCATCATCTTAGCCGATTTCTGACAATCTTGCCCTACTGTAGATGTGTGCAAGT
rJMFF012F12+ GTGTCCTCATCATCTTAGCCGATTTCTGACAATCTTGCCCTACTGTAGATGTGTGCAAGT
                      ____________________________________________________________
consensus GTGTCCTCATCATCTTAGCCGATTTCTGACAATCTTGCCCTACTGTAGATGTGTGCAAGT
 
. : . : . : . : . : . :
rJMSF025D21+ GGGCAGAGACAAAAGTGAGTTCAATTTTAAGATTTTATGAGTTACTATGAGACCCTAGGA
rJMFF012F12+ GGGCAGAGACAAAAGTGAGTTCAATTTTAAGATTTTATGAGTTACTATGAGACCCTAGGA
                      ____________________________________________________________
consensus GGGCAGAGACAAAAGTGAGTTCAATTTTAAGATTTTATGAGTTACTATGAGACCCTAGGA
 
. : . : . : . : . : . :
rJMSF025D21+ TCTGTTGTACCCTTTTGAAGAACAGACGAGCAGATGATGAATGTTTGCCTGCAGAGCGCG
rJMFF012F12+ TCTGTTGTACCCTTTTGAAGAACAGACGAGCAGATGATGAATGTTTGCCTGCAGAGCGCG
                      ____________________________________________________________
consensus TCTGTTGTACCCTTTTGAAGAACAGACGAGCAGATGATGAATGTTTGCCTGCAGAGCGCG
 
. : . : . : . : . : . :
rJMSF025D21+ GATAACAAATGAAAGAAACGATAGTTATGTAAATTGTACAGCTTTTGATTTCCAACGTAC
rJMFF012F12+ GATAACAAATGAAAGAAACGATAGTTATGTAAATTGTACAGCTTTTGATTTCCAACGTAC
                      ____________________________________________________________
consensus GATAACAAATGAAAGAAACGATAGTTATGTAAATTGTACAGCTTTTGATTTCCAACGTAC
 
. : . : . : . : . : . :
rJMSF025D21+ CTTTTTTTCCCCTCAA
rJMFF012F12+ CTTTTTTTCCCCTCAATGTACTTTCAACTTCTAGATTGTTACAATTTTCTGGACAAATAT
                      ____________________________________________________________
consensus CTTTTTTTCCCCTCAATGTACTTTCAACTTCTAGATTGTTACAATTTTCTGGACAAATAT
 
. : . : . : . : . : . :
rJMFF012F12+ GCCACAAATAGATCAAATAGGACTGTTTATCTTTTTGTCGCCGTTTATTGCTTATTATTA
                      ____________________________________________________________
consensus GCCACAAATAGATCAAATAGGACTGTTTATCTTTTTGTCGCCGTTTATTGCTTATTATTA